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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OEDK] human gut metagenome; human gut
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181104343
OEDK01003854
[OEDK] human gut metagenome; human gut
13
96
+
Tyr
GTA
[ENA]
¢þ
>WENV181104342
OEDK01003349
[OEDK] human gut metagenome; human gut
16
90
+
Ile
GAT
[ENA]
¢þ
>WENV181104348
OEDK01005876
[OEDK] human gut metagenome; human gut
37
113
+
Ile
GAT
[ENA]
¢þ
>WENV181104354
OEDK01008575
[OEDK] human gut metagenome; human gut
43
125
+
Tyr
GTA
[ENA]
¢þ
>WENV181104345
OEDK01005215
[OEDK] human gut metagenome; human gut
49
124
+
Ala
TGC
[ENA]
¢þ
>WENV181104358
OEDK01012636
[OEDK] human gut metagenome; human gut
50
125
+
Ala
TGC
[ENA]
¢þ
>WENV181104336
OEDK01000639
[OEDK] human gut metagenome; human gut
58
133
+
Val
GAC
[ENA]
¢þ
>WENV181104356
OEDK01008993
[OEDK] human gut metagenome; human gut
72
146
+
Glu
CTC
[ENA]
¢þ
>WENV181104351
OEDK01007389
[OEDK] human gut metagenome; human gut
94
10
-
Leu
TAA
[ENA]
¢þ
>WENV181104340
OEDK01002859
[OEDK] human gut metagenome; human gut
104
177
+
Ala
TGC
[ENA]
¢þ
>WENV181104353
OEDK01008302
[OEDK] human gut metagenome; human gut
105
34
-
Cys
GCA
[ENA]
¢þ
>WENV181104338
OEDK01000786
[OEDK] human gut metagenome; human gut
109
183
+
Ile2
CAT
[ENA]
¢þ
>WENV181104359
OEDK01013076
[OEDK] human gut metagenome; human gut
110
37
-
Phe
GAA
[ENA]
¢þ
>WENV181104352
OEDK01008179
[OEDK] human gut metagenome; human gut
114
187
+
Gln
CTG
[ENA]
¢þ
>WENV181104349
OEDK01006927
[OEDK] human gut metagenome; human gut
118
193
+
Asn
GTT
[ENA]
¢þ
>WENV181104339
OEDK01002480
[OEDK] human gut metagenome; human gut
122
47
-
Pro
TGG
[ENA]
¢þ
>WENV181104357
OEDK01009545
[OEDK] human gut metagenome; human gut
135
209
+
Asp
GTC
[ENA]
¢þ
>WENV181104337
OEDK01000668
[OEDK] human gut metagenome; human gut
143
217
+
Glu
CTC
[ENA]
¢þ
>WENV181104355
OEDK01008778
[OEDK] human gut metagenome; human gut
156
80
-
His
GTG
[ENA]
¢þ
>WENV181104347
OEDK01005865
[OEDK] human gut metagenome; human gut
160
245
+
Tyr
GTA
[ENA]
¢þ
>WENV181104346
OEDK01005226
[OEDK] human gut metagenome; human gut
172
96
-
fMet
CAT
[ENA]
¢þ
>WENV181104344
OEDK01004285
[OEDK] human gut metagenome; human gut
175
250
+
Thr
GGT
[ENA]
¢þ
>WENV181104350
OEDK01007389
[OEDK] human gut metagenome; human gut
188
115
-
Gly
GCC
[ENA]
¢þ
>WENV181104341
OEDK01002859
[OEDK] human gut metagenome; human gut
199
274
+
Ile
GAT
[ENA]
¢þ
>WENV181104333
OEDK01000088
[OEDK] human gut metagenome; human gut
344
416
+
Arg
CCT
[ENA]
¢þ
>WENV181104335
OEDK01000172
[OEDK] human gut metagenome; human gut
682
608
-
Ala
TGC
[ENA]
¢þ
>WENV181104334
OEDK01000172
[OEDK] human gut metagenome; human gut
773
699
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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