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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OEEC] human gut metagenome; human gut
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181104553
OEEC01015091
[OEEC] human gut metagenome; human gut
5
77
+
Glu
CTC
[ENA]
¢þ
>WENV181104551
OEEC01013658
[OEEC] human gut metagenome; human gut
27
115
+
Ser
GGA
[ENA]
¢þ
>WENV181104546
OEEC01008172
[OEEC] human gut metagenome; human gut
42
116
+
Val
TAC
[ENA]
¢þ
>WENV181104548
OEEC01011196
[OEEC] human gut metagenome; human gut
44
118
+
Ile2
CAT
[ENA]
¢þ
>WENV181104542
OEEC01006402
[OEEC] human gut metagenome; human gut
50
137
+
Ser
GGA
[ENA]
¢þ
>WENV181104532
OEEC01000159
[OEEC] human gut metagenome; human gut
78
162
+
Leu
CAA
[ENA]
¢þ
>WENV181104549
OEEC01011333
[OEEC] human gut metagenome; human gut
83
157
+
Phe
GAA
[ENA]
¢þ
>WENV181104554
OEEC01015102
[OEEC] human gut metagenome; human gut
99
26
-
Lys
CTT
[ENA]
¢þ
>WENV181104540
OEEC01005813
[OEEC] human gut metagenome; human gut
106
180
+
Pro
GGG
[ENA]
¢þ
>WENV181104552
OEEC01014422
[OEEC] human gut metagenome; human gut
107
34
-
Arg
CCT
[ENA]
¢þ
>WENV181104555
OEEC01016226
[OEEC] human gut metagenome; human gut
117
41
-
Met
CAT
[ENA]
¢þ
>WENV181104545
OEEC01007889
[OEEC] human gut metagenome; human gut
140
225
+
Ser
TGA
[ENA]
¢þ
>WENV181104544
OEEC01007865
[OEEC] human gut metagenome; human gut
145
71
-
Val
TAC
[ENA]
¢þ
>WENV181104541
OEEC01006171
[OEEC] human gut metagenome; human gut
154
81
-
Lys
TTT
[ENA]
¢þ
>WENV181104543
OEEC01006517
[OEEC] human gut metagenome; human gut
167
241
+
Thr
TGT
[ENA]
¢þ
>WENV181104534
OEEC01000337
[OEEC] human gut metagenome; human gut
171
87
-
Leu
TAG
[ENA]
¢þ
>WENV181104550
OEEC01012737
[OEEC] human gut metagenome; human gut
172
98
-
Pro
TGG
[ENA]
¢þ
>WENV181104539
OEEC01005660
[OEEC] human gut metagenome; human gut
213
139
-
Asn
GTT
[ENA]
¢þ
>WENV181104536
OEEC01002528
[OEEC] human gut metagenome; human gut
234
307
+
Ala
TGC
[ENA]
¢þ
>WENV181104547
OEEC01008656
[OEEC] human gut metagenome; human gut
243
169
-
Thr
TGT
[ENA]
¢þ
>WENV181104538
OEEC01003944
[OEEC] human gut metagenome; human gut
275
202
-
Pro
CGG
[ENA]
¢þ
>WENV181104537
OEEC01002528
[OEEC] human gut metagenome; human gut
330
404
+
Ile
GAT
[ENA]
¢þ
>WENV181104535
OEEC01002207
[OEEC] human gut metagenome; human gut
332
258
-
Thr
TGT
[ENA]
¢þ
>WENV181104533
OEEC01000216
[OEEC] human gut metagenome; human gut
1262
1335
+
Phe
GAA
[ENA]
¢þ
>WENV181104531
OEEC01000002
[OEEC] human gut metagenome; human gut
2981
2907
-
Ala
TGC
[ENA]
¢þ
>WENV181104530
OEEC01000002
[OEEC] human gut metagenome; human gut
3073
2999
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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