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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OEHR] human gut metagenome; human gut
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181147233
OEHR01024408
[OEHR] human gut metagenome; human gut
3
76
+
Gly
GCC
[ENA]
¢þ
>WENV181147225
OEHR01020037
[OEHR] human gut metagenome; human gut
20
94
+
Thr
TGT
[ENA]
¢þ
>WENV181147230
OEHR01022846
[OEHR] human gut metagenome; human gut
29
105
+
Asp
GTC
[ENA]
¢þ
>WENV181147216
OEHR01013824
[OEHR] human gut metagenome; human gut
34
106
+
Thr
GGT
[ENA]
¢þ
>WENV181147177
OEHR01000098
[OEHR] human gut metagenome; human gut
34
108
+
Ala
TGC
[ENA]
¢þ
>WENV181147203
OEHR01006510
[OEHR] human gut metagenome; human gut
42
118
+
Arg
ACG
[ENA]
¢þ
>WENV181147219
OEHR01017728
[OEHR] human gut metagenome; human gut
44
119
+
Lys
CTT
[ENA]
¢þ
>WENV181147184
OEHR01001674
[OEHR] human gut metagenome; human gut
62
136
+
Glu
TTC
[ENA]
¢þ
>WENV181147211
OEHR01011385
[OEHR] human gut metagenome; human gut
81
155
+
Cys
GCA
[ENA]
¢þ
>WENV181147196
OEHR01005155
[OEHR] human gut metagenome; human gut
82
166
+
Leu
CAG
[ENA]
¢þ
>WENV181147204
OEHR01007142
[OEHR] human gut metagenome; human gut
84
158
+
Asp
GTC
[ENA]
¢þ
>WENV181147232
OEHR01023450
[OEHR] human gut metagenome; human gut
85
160
+
Val
TAC
[ENA]
¢þ
>WENV181147227
OEHR01020154
[OEHR] human gut metagenome; human gut
91
166
+
Ala
GGC
[ENA]
¢þ
>WENV181147224
OEHR01019872
[OEHR] human gut metagenome; human gut
93
166
+
Gly
CCC
[ENA]
¢þ
>WENV181147228
OEHR01020565
[OEHR] human gut metagenome; human gut
95
168
+
Glu
TTC
[ENA]
¢þ
>WENV181147214
OEHR01012906
[OEHR] human gut metagenome; human gut
97
11
-
Ser
TGA
[ENA]
¢þ
>WENV181147210
OEHR01010760
[OEHR] human gut metagenome; human gut
102
27
-
Ala
TGC
[ENA]
¢þ
>WENV181147220
OEHR01017836
[OEHR] human gut metagenome; human gut
110
35
-
Gln
CTG
[ENA]
¢þ
>WENV181147231
OEHR01022846
[OEHR] human gut metagenome; human gut
112
187
+
Phe
GAA
[ENA]
¢þ
>WENV181147222
OEHR01018079
[OEHR] human gut metagenome; human gut
121
45
-
His
GTG
[ENA]
¢þ
>WENV181147212
OEHR01012724
[OEHR] human gut metagenome; human gut
125
49
-
Ile
GAT
[ENA]
¢þ
>WENV181147200
OEHR01005777
[OEHR] human gut metagenome; human gut
128
57
-
Glu
TTC
[ENA]
¢þ
>WENV181147229
OEHR01021910
[OEHR] human gut metagenome; human gut
130
56
-
Met
CAT
[ENA]
¢þ
>WENV181147223
OEHR01019865
[OEHR] human gut metagenome; human gut
133
57
-
Met
CAT
[ENA]
¢þ
>WENV181147193
OEHR01004775
[OEHR] human gut metagenome; human gut
138
220
+
Leu
TAG
[ENA]
¢þ
>WENV181147195
OEHR01005034
[OEHR] human gut metagenome; human gut
148
67
-
Leu
CAG
[ENA]
¢þ
>WENV181147218
OEHR01017444
[OEHR] human gut metagenome; human gut
149
76
-
Phe
GAA
[ENA]
¢þ
>WENV181147207
OEHR01008601
[OEHR] human gut metagenome; human gut
150
76
-
Met
CAT
[ENA]
¢þ
>WENV181147198
OEHR01005273
[OEHR] human gut metagenome; human gut
150
222
+
Glu
TTC
[ENA]
¢þ
>WENV181147201
OEHR01005896
[OEHR] human gut metagenome; human gut
157
74
-
Tyr
GTA
[ENA]
¢þ
>WENV181147208
OEHR01009721
[OEHR] human gut metagenome; human gut
163
88
-
Pro
TGG
[ENA]
¢þ
>WENV181147217
OEHR01014731
[OEHR] human gut metagenome; human gut
171
98
-
Asn
GTT
[ENA]
¢þ
>WENV181147189
OEHR01003856
[OEHR] human gut metagenome; human gut
171
244
+
Lys
CTT
[ENA]
¢þ
>WENV181147213
OEHR01012906
[OEHR] human gut metagenome; human gut
173
102
-
Gly
TCC
[ENA]
¢þ
>WENV181147185
OEHR01001674
[OEHR] human gut metagenome; human gut
181
257
+
Val
CAC
[ENA]
¢þ
>WENV181147205
OEHR01007348
[OEHR] human gut metagenome; human gut
183
258
+
Lys
CTT
[ENA]
¢þ
>WENV181147206
OEHR01008302
[OEHR] human gut metagenome; human gut
184
111
-
Gly
GCC
[ENA]
¢þ
>WENV181147202
OEHR01006183
[OEHR] human gut metagenome; human gut
186
265
+
Leu
CAA
[ENA]
¢þ
>WENV181147226
OEHR01020039
[OEHR] human gut metagenome; human gut
190
106
-
Tyr
GTA
[ENA]
¢þ
>WENV181147209
OEHR01010285
[OEHR] human gut metagenome; human gut
194
123
-
Cys
GCA
[ENA]
¢þ
>WENV181147221
OEHR01018079
[OEHR] human gut metagenome; human gut
204
128
-
Arg
TCT
[ENA]
¢þ
>WENV181147197
OEHR01005155
[OEHR] human gut metagenome; human gut
207
291
+
Leu
GAG
[ENA]
¢þ
>WENV181147191
OEHR01004054
[OEHR] human gut metagenome; human gut
213
139
-
Val
GAC
[ENA]
¢þ
>WENV181147215
OEHR01013455
[OEHR] human gut metagenome; human gut
221
146
-
Thr
GGT
[ENA]
¢þ
>WENV181147199
OEHR01005777
[OEHR] human gut metagenome; human gut
243
171
-
Asn
GTT
[ENA]
¢þ
>WENV181147194
OEHR01005034
[OEHR] human gut metagenome; human gut
268
195
-
Gly
GCC
[ENA]
¢þ
>WENV181147190
OEHR01003856
[OEHR] human gut metagenome; human gut
269
342
+
Lys
CTT
[ENA]
¢þ
>WENV181147192
OEHR01004486
[OEHR] human gut metagenome; human gut
272
198
-
Arg
TCT
[ENA]
¢þ
>WENV181147188
OEHR01002548
[OEHR] human gut metagenome; human gut
304
228
-
Ile
GAT
[ENA]
¢þ
>WENV181147186
OEHR01002278
[OEHR] human gut metagenome; human gut
307
234
-
Lys
TTT
[ENA]
¢þ
>WENV181147179
OEHR01000799
[OEHR] human gut metagenome; human gut
368
442
+
Thr
TGT
[ENA]
¢þ
>WENV181147187
OEHR01002548
[OEHR] human gut metagenome; human gut
400
327
-
Ala
TGC
[ENA]
¢þ
>WENV181147180
OEHR01000799
[OEHR] human gut metagenome; human gut
487
570
+
Tyr
GTA
[ENA]
¢þ
>WENV181147183
OEHR01001201
[OEHR] human gut metagenome; human gut
587
662
+
Ala
TGC
[ENA]
¢þ
>WENV181147182
OEHR01001200
[OEHR] human gut metagenome; human gut
597
672
+
Ala
TGC
[ENA]
¢þ
>WENV181147181
OEHR01000799
[OEHR] human gut metagenome; human gut
685
757
+
Thr
GGT
[ENA]
¢þ
>WENV181147178
OEHR01000278
[OEHR] human gut metagenome; human gut
1119
1045
-
Ile2
CAT
[ENA]
¢þ
>WENV181147174
OEHR01000019
[OEHR] human gut metagenome; human gut
1647
1721
+
Ile
GAT
[ENA]
¢þ
>WENV181147175
OEHR01000019
[OEHR] human gut metagenome; human gut
1811
1885
+
Ala
TGC
[ENA]
¢þ
>WENV181147176
OEHR01000083
[OEHR] human gut metagenome; human gut
1951
2036
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK