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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKB] metagenome; 1998
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184387
OEKB01000202
[OEKB] metagenome; 1998
7
77
+
Cys
GCA
[ENA]
¢þ
>WENV181184388
OEKB01000206
[OEKB] metagenome; 1998
73
1
-
Asn
GTT
[ENA]
¢þ
>WENV181184364
OEKB01000005
[OEKB] metagenome; 1998
75
3
-
Ala
CGC
[ENA]
¢þ
>WENV181184371
OEKB01000098
[OEKB] metagenome; 1998
137
65
-
Ala
GGC
[ENA]
¢þ
>WENV181184391
OEKB01000222
[OEKB] metagenome; 1998
436
364
-
Glu
CTC
[ENA]
¢þ
>WENV181184390
OEKB01000222
[OEKB] metagenome; 1998
656
728
+
Gln
CTG
[ENA]
¢þ
>WENV181184367
OEKB01000035
[OEKB] metagenome; 1998
2830
2758
-
Arg
GCG
[ENA]
¢þ
>WENV181184377
OEKB01000133
[OEKB] metagenome; 1998
2892
2809
-
Leu
CAG
[ENA]
¢þ
>WENV181184399
OEKB01000276
[OEKB] metagenome; 1998
3398
3309
-
Ser
GGA
[ENA]
¢þ
>WENV181184375
OEKB01000126
[OEKB] metagenome; 1998
3847
3775
-
Thr
GGT
[ENA]
¢þ
>WENV181184370
OEKB01000085
[OEKB] metagenome; 1998
4004
4077
+
Gln
TTG
[ENA]
¢þ
>WENV181184389
OEKB01000220
[OEKB] metagenome; 1998
4504
4432
-
Val
CAC
[ENA]
¢þ
>WENV181184368
OEKB01000072
[OEKB] metagenome; 1998
4527
4453
-
Trp
CCA
[ENA]
¢þ
>WENV181184374
OEKB01000126
[OEKB] metagenome; 1998
4988
4907
-
Tyr
GTA
[ENA]
¢þ
>WENV181184396
OEKB01000266
[OEKB] metagenome; 1998
5333
5260
-
Met
CAT
[ENA]
¢þ
>WENV181184379
OEKB01000191
[OEKB] metagenome; 1998
6167
6240
+
Pro
TGG
[ENA]
¢þ
>WENV181184392
OEKB01000230
[OEKB] metagenome; 1998
6768
6684
-
Leu
CAA
[ENA]
¢þ
>WENV181184378
OEKB01000189
[OEKB] metagenome; 1998
8343
8431
+
Ser
TGA
[ENA]
¢þ
>WENV181184380
OEKB01000191
[OEKB] metagenome; 1998
10579
10649
+
Gly
TCC
[ENA]
¢þ
>WENV181184369
OEKB01000080
[OEKB] metagenome; 1998
10726
10798
+
Lys
CTT
[ENA]
¢þ
>WENV181184384
OEKB01000191
[OEKB] metagenome; 1998
13986
13915
-
Arg
TCT
[ENA]
¢þ
>WENV181184365
OEKB01000007
[OEKB] metagenome; 1998
15128
15201
+
Gly
CCC
[ENA]
¢þ
>WENV181184381
OEKB01000191
[OEKB] metagenome; 1998
15494
15567
+
His
GTG
[ENA]
¢þ
>WENV181184382
OEKB01000191
[OEKB] metagenome; 1998
15753
15824
+
Arg
TCG
[ENA]
¢þ
>WENV181184397
OEKB01000272
[OEKB] metagenome; 1998
18013
18085
+
Phe
GAA
[ENA]
¢þ
>WENV181184372
OEKB01000121
[OEKB] metagenome; 1998
22961
23049
+
Leu
TAA
[ENA]
¢þ
>WENV181184394
OEKB01000251
[OEKB] metagenome; 1998
26804
26719
-
Leu
GAG
[ENA]
¢þ
>WENV181184386
OEKB01000193
[OEKB] metagenome; 1998
27143
27051
-
Ser
GCT
[ENA]
¢þ
>WENV181184385
OEKB01000193
[OEKB] metagenome; 1998
27206
27295
+
Ser
CGA
[ENA]
¢þ
>WENV181184366
OEKB01000007
[OEKB] metagenome; 1998
27607
27535
-
Arg
CCG
[ENA]
¢þ
>WENV181184393
OEKB01000246
[OEKB] metagenome; 1998
27681
27756
+
Pro
CGG
[ENA]
¢þ
>WENV181184373
OEKB01000121
[OEKB] metagenome; 1998
27808
27882
+
fMet
CAT
[ENA]
¢þ
>WENV181184395
OEKB01000265
[OEKB] metagenome; 1998
29962
30034
+
Thr
TGT
[ENA]
¢þ
>WENV181184383
OEKB01000191
[OEKB] metagenome; 1998
31123
31209
+
Leu
TAG
[ENA]
¢þ
>WENV181184398
OEKB01000272
[OEKB] metagenome; 1998
55633
55706
+
Ile
GAT
[ENA]
¢þ
>WENV181184376
OEKB01000132
[OEKB] metagenome; 1998
60615
60542
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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