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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKD] metagenome; 1998
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184444
OEKD01000037
[OEKD] metagenome; 1998
74
158
+
Leu
GAG
[ENA]
¢þ
>WENV181184459
OEKD01000209
[OEKD] metagenome; 1998
110
36
-
Met
CAT
[ENA]
¢þ
>WENV181184445
OEKD01000037
[OEKD] metagenome; 1998
209
284
+
Val
TAC
[ENA]
¢þ
>WENV181184469
OEKD01000275
[OEKD] metagenome; 1998
392
469
+
Ile
TAT
[ENA]
¢þ
>WENV181184473
OEKD01000307
[OEKD] metagenome; 1998
651
565
-
Leu
CAG
[ENA]
¢þ
>WENV181184442
OEKD01000001
[OEKD] metagenome; 1998
1175
1100
-
Arg
GCG
[ENA]
¢þ
>WENV181184441
OEKD01000001
[OEKD] metagenome; 1998
1274
1183
-
Ser
GCT
[ENA]
¢þ
>WENV181184461
OEKD01000229
[OEKD] metagenome; 1998
1487
1562
+
Arg
TCT
[ENA]
¢þ
>WENV181184451
OEKD01000038
[OEKD] metagenome; 1998
1572
1485
-
Ser
GGA
[ENA]
¢þ
>WENV181184450
OEKD01000038
[OEKD] metagenome; 1998
1711
1626
-
Ser
CGA
[ENA]
¢þ
>WENV181184446
OEKD01000037
[OEKD] metagenome; 1998
2224
2299
+
Phe
GAA
[ENA]
¢þ
>WENV181184447
OEKD01000037
[OEKD] metagenome; 1998
2326
2401
+
Gly
GCC
[ENA]
¢þ
>WENV181184448
OEKD01000037
[OEKD] metagenome; 1998
2451
2524
+
Gln
TTG
[ENA]
¢þ
>WENV181184449
OEKD01000037
[OEKD] metagenome; 1998
2541
2617
+
Cys
GCA
[ENA]
¢þ
>WENV181184466
OEKD01000265
[OEKD] metagenome; 1998
2775
2690
-
Ser
TGA
[ENA]
¢þ
>WENV181184470
OEKD01000281
[OEKD] metagenome; 1998
2814
2739
-
Arg
CCT
[ENA]
¢þ
>WENV181184458
OEKD01000159
[OEKD] metagenome; 1998
3586
3510
-
Glu
TTC
[ENA]
¢þ
>WENV181184465
OEKD01000257
[OEKD] metagenome; 1998
4285
4360
+
Gly
TCC
[ENA]
¢þ
>WENV181184471
OEKD01000295
[OEKD] metagenome; 1998
5032
4958
-
Gln
CTG
[ENA]
¢þ
>WENV181184443
OEKD01000027
[OEKD] metagenome; 1998
6276
6201
-
Pro
TGG
[ENA]
¢þ
>WENV181184457
OEKD01000142
[OEKD] metagenome; 1998
6432
6508
+
Glu
CTC
[ENA]
¢þ
>WENV181184455
OEKD01000099
[OEKD] metagenome; 1998
9824
9748
-
Val
CAC
[ENA]
¢þ
>WENV181184452
OEKD01000058
[OEKD] metagenome; 1998
10258
10173
-
Leu
TAA
[ENA]
¢þ
>WENV181184453
OEKD01000063
[OEKD] metagenome; 1998
10356
10280
-
Pro
GGG
[ENA]
¢þ
>WENV181184462
OEKD01000256
[OEKD] metagenome; 1998
10932
11007
+
Ala
CGC
[ENA]
¢þ
>WENV181184463
OEKD01000256
[OEKD] metagenome; 1998
11556
11640
+
Tyr
GTA
[ENA]
¢þ
>WENV181184464
OEKD01000256
[OEKD] metagenome; 1998
13847
13922
+
Ala
GGC
[ENA]
¢þ
>WENV181184460
OEKD01000216
[OEKD] metagenome; 1998
16426
16502
+
Val
GAC
[ENA]
¢þ
>WENV181184474
OEKD01000312
[OEKD] metagenome; 1998
17543
17619
+
Asp
GTC
[ENA]
¢þ
>WENV181184456
OEKD01000114
[OEKD] metagenome; 1998
18140
18214
+
His
GTG
[ENA]
¢þ
>WENV181184468
OEKD01000272
[OEKD] metagenome; 1998
20332
20258
-
fMet
CAT
[ENA]
¢þ
>WENV181184467
OEKD01000272
[OEKD] metagenome; 1998
22470
22396
-
Lys
TTT
[ENA]
¢þ
>WENV181184472
OEKD01000307
[OEKD] metagenome; 1998
48150
48235
+
Leu
CAA
[ENA]
¢þ
>WENV181184454
OEKD01000084
[OEKD] metagenome; 1998
50180
50267
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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