This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OEKI] metagenome; 1998
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184508
OEKI01000132
[OEKI] metagenome; 1998
77
152
+
Phe
GAA
[ENA]
¢þ
>WENV181184528
OEKI01000293
[OEKI] metagenome; 1998
163
88
-
Thr
GGT
[ENA]
¢þ
>WENV181184509
OEKI01000132
[OEKI] metagenome; 1998
180
255
+
Gly
GCC
[ENA]
¢þ
>WENV181184521
OEKI01000195
[OEKI] metagenome; 1998
240
315
+
Ala
GGC
[ENA]
¢þ
>WENV181184527
OEKI01000293
[OEKI] metagenome; 1998
270
186
-
Tyr
GTA
[ENA]
¢þ
>WENV181184510
OEKI01000132
[OEKI] metagenome; 1998
303
376
+
Gln
TTG
[ENA]
¢þ
>WENV181184526
OEKI01000293
[OEKI] metagenome; 1998
412
337
-
Thr
TGT
[ENA]
¢þ
>WENV181184511
OEKI01000132
[OEKI] metagenome; 1998
453
529
+
Cys
GCA
[ENA]
¢þ
>WENV181184517
OEKI01000179
[OEKI] metagenome; 1998
821
897
+
Val
GAC
[ENA]
¢þ
>WENV181184502
OEKI01000030
[OEKI] metagenome; 1998
878
952
+
Asn
GTT
[ENA]
¢þ
>WENV181184512
OEKI01000140
[OEKI] metagenome; 1998
1061
1147
+
Leu
TAA
[ENA]
¢þ
>WENV181184507
OEKI01000131
[OEKI] metagenome; 1998
1451
1536
+
Leu
CAA
[ENA]
¢þ
>WENV181184513
OEKI01000147
[OEKI] metagenome; 1998
1462
1548
+
Leu
CAG
[ENA]
¢þ
>WENV181184514
OEKI01000147
[OEKI] metagenome; 1998
1588
1672
+
Leu
GAG
[ENA]
¢þ
>WENV181184515
OEKI01000147
[OEKI] metagenome; 1998
2111
2187
+
Val
TAC
[ENA]
¢þ
>WENV181184532
OEKI01000317
[OEKI] metagenome; 1998
2254
2329
+
Ala
CGC
[ENA]
¢þ
>WENV181184530
OEKI01000302
[OEKI] metagenome; 1998
2503
2429
-
Glu
TTC
[ENA]
¢þ
>WENV181184518
OEKI01000185
[OEKI] metagenome; 1998
2789
2880
+
Ser
GCT
[ENA]
¢þ
>WENV181184519
OEKI01000185
[OEKI] metagenome; 1998
2920
2995
+
Arg
GCG
[ENA]
¢þ
>WENV181184503
OEKI01000045
[OEKI] metagenome; 1998
4001
4077
+
Arg
TCG
[ENA]
¢þ
>WENV181184505
OEKI01000056
[OEKI] metagenome; 1998
4096
4009
-
Leu
TAG
[ENA]
¢þ
>WENV181184538
OEKI01000392
[OEKI] metagenome; 1998
4764
4840
+
Pro
CGG
[ENA]
¢þ
>WENV181184539
OEKI01000415
[OEKI] metagenome; 1998
5849
5774
-
His
GTG
[ENA]
¢þ
>WENV181184525
OEKI01000286
[OEKI] metagenome; 1998
5962
5886
-
Asp
GTC
[ENA]
¢þ
>WENV181184520
OEKI01000185
[OEKI] metagenome; 1998
6794
6878
+
Ser
CGA
[ENA]
¢þ
>WENV181184506
OEKI01000070
[OEKI] metagenome; 1998
7201
7276
+
Arg
CCG
[ENA]
¢þ
>WENV181184516
OEKI01000171
[OEKI] metagenome; 1998
7414
7329
-
Ser
TGA
[ENA]
¢þ
>WENV181184537
OEKI01000376
[OEKI] metagenome; 1998
8476
8402
-
Gln
CTG
[ENA]
¢þ
>WENV181184536
OEKI01000365
[OEKI] metagenome; 1998
9399
9473
+
fMet
CAT
[ENA]
¢þ
>WENV181184540
OEKI01000422
[OEKI] metagenome; 1998
9808
9733
-
Pro
TGG
[ENA]
¢þ
>WENV181184531
OEKI01000313
[OEKI] metagenome; 1998
9837
9935
+
SeC
TCA
[ENA]
¢þ
>WENV181184529
OEKI01000295
[OEKI] metagenome; 1998
10536
10464
-
Lys
TTT
[ENA]
¢þ
>WENV181184504
OEKI01000051
[OEKI] metagenome; 1998
10744
10819
+
Arg
TCT
[ENA]
¢þ
>WENV181184533
OEKI01000323
[OEKI] metagenome; 1998
11537
11462
-
Val
CAC
[ENA]
¢þ
>WENV181184524
OEKI01000234
[OEKI] metagenome; 1998
24514
24440
-
Met
CAT
[ENA]
¢þ
>WENV181184523
OEKI01000217
[OEKI] metagenome; 1998
27337
27262
-
Ile
TAT
[ENA]
¢þ
>WENV181184534
OEKI01000326
[OEKI] metagenome; 1998
28270
28346
+
Pro
GGG
[ENA]
¢þ
>WENV181184522
OEKI01000213
[OEKI] metagenome; 1998
29303
29377
+
Lys
CTT
[ENA]
¢þ
>WENV181184535
OEKI01000326
[OEKI] metagenome; 1998
52975
53050
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK