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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEKQ] metagenome; 1998
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184775
OEKQ01000502
[OEKQ] metagenome; 1998
38
124
+
Ser
CGA
[ENA]
¢þ
>WENV181184761
OEKQ01000064
[OEKQ] metagenome; 1998
166
92
-
His
GTG
[ENA]
¢þ
>WENV181184762
OEKQ01000074
[OEKQ] metagenome; 1998
498
585
+
Ser
TGA
[ENA]
¢þ
>WENV181184769
OEKQ01000378
[OEKQ] metagenome; 1998
597
670
+
Ile
GAT
[ENA]
¢þ
>WENV181184763
OEKQ01000084
[OEKQ] metagenome; 1998
774
847
+
Pro
TGG
[ENA]
¢þ
>WENV181184759
OEKQ01000024
[OEKQ] metagenome; 1998
1634
1556
-
Arg
CCG
[ENA]
¢þ
>WENV181184765
OEKQ01000163
[OEKQ] metagenome; 1998
2366
2438
+
Asn
GTT
[ENA]
¢þ
>WENV181184757
OEKQ01000009
[OEKQ] metagenome; 1998
3045
2972
-
Gly
CCC
[ENA]
¢þ
>WENV181184767
OEKQ01000188
[OEKQ] metagenome; 1998
3649
3722
+
Val
CAC
[ENA]
¢þ
>WENV181184771
OEKQ01000443
[OEKQ] metagenome; 1998
4830
4755
-
Asp
GTC
[ENA]
¢þ
>WENV181184772
OEKQ01000449
[OEKQ] metagenome; 1998
6714
6787
+
Ala
TGC
[ENA]
¢þ
>WENV181184770
OEKQ01000443
[OEKQ] metagenome; 1998
6720
6646
-
Val
TAC
[ENA]
¢þ
>WENV181184766
OEKQ01000185
[OEKQ] metagenome; 1998
9067
9139
+
Cys
GCA
[ENA]
¢þ
>WENV181184768
OEKQ01000331
[OEKQ] metagenome; 1998
9600
9510
-
Ser
GCT
[ENA]
¢þ
>WENV181184774
OEKQ01000470
[OEKQ] metagenome; 1998
10000
9927
-
Pro
GGG
[ENA]
¢þ
>WENV181184758
OEKQ01000013
[OEKQ] metagenome; 1998
11196
11270
+
Met
CAT
[ENA]
¢þ
>WENV181184760
OEKQ01000035
[OEKQ] metagenome; 1998
12173
12245
+
Lys
TTT
[ENA]
¢þ
>WENV181184764
OEKQ01000144
[OEKQ] metagenome; 1998
12251
12334
+
Leu
CAG
[ENA]
¢þ
>WENV181184776
OEKQ01000532
[OEKQ] metagenome; 1998
16292
16366
+
Pro
TGG
[ENA]
¢þ
>WENV181184773
OEKQ01000453
[OEKQ] metagenome; 1998
21707
21789
+
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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