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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKS] metagenome; 1998
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184802
OEKS01000084
[OEKS] metagenome; 1998
75
2
-
Val
CAC
[ENA]
¢þ
>WENV181184799
OEKS01000036
[OEKS] metagenome; 1998
76
1
-
Arg
CCG
[ENA]
¢þ
>WENV181184817
OEKS01000536
[OEKS] metagenome; 1998
176
103
-
Pro
GGG
[ENA]
¢þ
>WENV181184800
OEKS01000042
[OEKS] metagenome; 1998
182
95
-
Ser
CGA
[ENA]
¢þ
>WENV181184806
OEKS01000175
[OEKS] metagenome; 1998
590
515
-
Pro
CGG
[ENA]
¢þ
>WENV181184803
OEKS01000138
[OEKS] metagenome; 1998
766
694
-
Lys
TTT
[ENA]
¢þ
>WENV181184810
OEKS01000271
[OEKS] metagenome; 1998
882
809
-
Ile
GAT
[ENA]
¢þ
>WENV181184804
OEKS01000154
[OEKS] metagenome; 1998
948
866
-
Leu
CAA
[ENA]
¢þ
>WENV181184807
OEKS01000200
[OEKS] metagenome; 1998
1187
1260
+
Ala
GGC
[ENA]
¢þ
>WENV181184828
OEKS01000794
[OEKS] metagenome; 1998
1301
1226
-
Pro
CGG
[ENA]
¢þ
>WENV181184809
OEKS01000227
[OEKS] metagenome; 1998
1526
1452
-
Met
CAT
[ENA]
¢þ
>WENV181184818
OEKS01000601
[OEKS] metagenome; 1998
1779
1853
+
His
GTG
[ENA]
¢þ
>WENV181184826
OEKS01000708
[OEKS] metagenome; 1998
1856
1931
+
Asp
GTC
[ENA]
¢þ
>WENV181184819
OEKS01000601
[OEKS] metagenome; 1998
1921
1993
+
Trp
CCA
[ENA]
¢þ
>WENV181184808
OEKS01000225
[OEKS] metagenome; 1998
2097
2014
-
Leu
CAG
[ENA]
¢þ
>WENV181184820
OEKS01000601
[OEKS] metagenome; 1998
2260
2334
+
Glu
CTC
[ENA]
¢þ
>WENV181184821
OEKS01000601
[OEKS] metagenome; 1998
2367
2439
+
Glu
TTC
[ENA]
¢þ
>WENV181184822
OEKS01000601
[OEKS] metagenome; 1998
2451
2523
+
Lys
CTT
[ENA]
¢þ
>WENV181184829
OEKS01000848
[OEKS] metagenome; 1998
2509
2436
-
Ala
TGC
[ENA]
¢þ
>WENV181184805
OEKS01000175
[OEKS] metagenome; 1998
2793
2720
-
Arg
ACG
[ENA]
¢þ
>WENV181184824
OEKS01000635
[OEKS] metagenome; 1998
4616
4529
-
Ser
GGA
[ENA]
¢þ
>WENV181184801
OEKS01000084
[OEKS] metagenome; 1998
5279
5206
-
Ile2
CAT
[ENA]
¢þ
>WENV181184823
OEKS01000633
[OEKS] metagenome; 1998
5701
5628
-
Asn
GTT
[ENA]
¢þ
>WENV181184811
OEKS01000331
[OEKS] metagenome; 1998
8000
8073
+
Thr
TGT
[ENA]
¢þ
>WENV181184812
OEKS01000331
[OEKS] metagenome; 1998
8159
8242
+
Tyr
GTA
[ENA]
¢þ
>WENV181184813
OEKS01000331
[OEKS] metagenome; 1998
8280
8352
+
Gly
TCC
[ENA]
¢þ
>WENV181184814
OEKS01000331
[OEKS] metagenome; 1998
8370
8442
+
Thr
GGT
[ENA]
¢þ
>WENV181184827
OEKS01000741
[OEKS] metagenome; 1998
11539
11613
+
Arg
CCT
[ENA]
¢þ
>WENV181184815
OEKS01000383
[OEKS] metagenome; 1998
12935
12851
-
Leu
TAA
[ENA]
¢þ
>WENV181184816
OEKS01000496
[OEKS] metagenome; 1998
13909
13983
+
Asn
GTT
[ENA]
¢þ
>WENV181184825
OEKS01000665
[OEKS] metagenome; 1998
22180
22252
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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