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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKV] metagenome; 1998
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184885
OEKV01000383
[OEKV] metagenome; 1998
2
74
+
Val
TAC
[ENA]
¢þ
>WENV181184877
OEKV01000022
[OEKV] metagenome; 1998
144
218
+
Trp
CCA
[ENA]
¢þ
>WENV181184893
OEKV01000670
[OEKV] metagenome; 1998
252
163
-
Ser
GCT
[ENA]
¢þ
>WENV181184900
OEKV01000870
[OEKV] metagenome; 1998
259
331
+
Lys
TTT
[ENA]
¢þ
>WENV181184904
OEKV01001089
[OEKV] metagenome; 1998
312
240
-
Ala
CGC
[ENA]
¢þ
>WENV181184899
OEKV01000868
[OEKV] metagenome; 1998
320
406
+
Leu
CAA
[ENA]
¢þ
>WENV181184905
OEKV01001114
[OEKV] metagenome; 1998
449
522
+
Asp
GTC
[ENA]
¢þ
>WENV181184880
OEKV01000234
[OEKV] metagenome; 1998
476
547
+
Gly
TCC
[ENA]
¢þ
>WENV181184898
OEKV01000828
[OEKV] metagenome; 1998
560
471
-
Ser
CGA
[ENA]
¢þ
>WENV181184876
OEKV01000012
[OEKV] metagenome; 1998
560
486
-
Arg
CCG
[ENA]
¢þ
>WENV181184879
OEKV01000041
[OEKV] metagenome; 1998
596
671
+
Pro
GGG
[ENA]
¢þ
>WENV181184887
OEKV01000571
[OEKV] metagenome; 1998
639
568
-
Met
CAT
[ENA]
¢þ
>WENV181184886
OEKV01000471
[OEKV] metagenome; 1998
792
719
-
Gln
TTG
[ENA]
¢þ
>WENV181184892
OEKV01000643
[OEKV] metagenome; 1998
839
766
-
Pro
CGG
[ENA]
¢þ
>WENV181184895
OEKV01000749
[OEKV] metagenome; 1998
907
982
+
Glu
TTC
[ENA]
¢þ
>WENV181184901
OEKV01000978
[OEKV] metagenome; 1998
1157
1233
+
fMet
CAT
[ENA]
¢þ
>WENV181184883
OEKV01000350
[OEKV] metagenome; 1998
1454
1382
-
Ile2
CAT
[ENA]
¢þ
>WENV181184889
OEKV01000619
[OEKV] metagenome; 1998
1503
1577
+
Val
CAC
[ENA]
¢þ
>WENV181184902
OEKV01001067
[OEKV] metagenome; 1998
1605
1678
+
Thr
GGT
[ENA]
¢þ
>WENV181184888
OEKV01000611
[OEKV] metagenome; 1998
1649
1566
-
Leu
CAG
[ENA]
¢þ
>WENV181184882
OEKV01000340
[OEKV] metagenome; 1998
1726
1654
-
Thr
CGT
[ENA]
¢þ
>WENV181184891
OEKV01000624
[OEKV] metagenome; 1998
2049
1976
-
Arg
TCG
[ENA]
¢þ
>WENV181184897
OEKV01000824
[OEKV] metagenome; 1998
2142
2216
+
Glu
CTC
[ENA]
¢þ
>WENV181184890
OEKV01000624
[OEKV] metagenome; 1998
2221
2149
-
His
GTG
[ENA]
¢þ
>WENV181184884
OEKV01000351
[OEKV] metagenome; 1998
2454
2371
-
Tyr
GTA
[ENA]
¢þ
>WENV181184878
OEKV01000034
[OEKV] metagenome; 1998
2504
2429
-
Pro
TGG
[ENA]
¢þ
>WENV181184894
OEKV01000745
[OEKV] metagenome; 1998
2682
2609
-
Glu
TTC
[ENA]
¢þ
>WENV181184881
OEKV01000279
[OEKV] metagenome; 1998
2844
2762
-
Leu
TAG
[ENA]
¢þ
>WENV181184903
OEKV01001073
[OEKV] metagenome; 1998
3020
2935
-
Leu
TAA
[ENA]
¢þ
>WENV181184896
OEKV01000772
[OEKV] metagenome; 1998
5060
5134
+
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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