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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEKW] metagenome; 1998
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184917
OEKW01000152
[OEKW] metagenome; 1998
75
1
-
Pro
GGG
[ENA]
¢þ
>WENV181184930
OEKW01000537
[OEKW] metagenome; 1998
483
408
-
Ala
GGC
[ENA]
¢þ
>WENV181184928
OEKW01000481
[OEKW] metagenome; 1998
1679
1765
+
Leu
TAA
[ENA]
¢þ
>WENV181184916
OEKW01000146
[OEKW] metagenome; 1998
1739
1662
-
Glu
CTC
[ENA]
¢þ
>WENV181184923
OEKW01000403
[OEKW] metagenome; 1998
1795
1870
+
Ala
CGC
[ENA]
¢þ
>WENV181184921
OEKW01000338
[OEKW] metagenome; 1998
1918
1842
-
fMet
CAT
[ENA]
¢þ
>WENV181184914
OEKW01000096
[OEKW] metagenome; 1998
2221
2145
-
Ile2
CAT
[ENA]
¢þ
>WENV181184929
OEKW01000537
[OEKW] metagenome; 1998
2397
2472
+
Lys
TTT
[ENA]
¢þ
>WENV181184910
OEKW01000047
[OEKW] metagenome; 1998
2444
2533
+
Ser
GGA
[ENA]
¢þ
>WENV181184922
OEKW01000351
[OEKW] metagenome; 1998
2751
2840
+
Ser
CGA
[ENA]
¢þ
>WENV181184931
OEKW01000571
[OEKW] metagenome; 1998
2870
2946
+
Arg
CCG
[ENA]
¢þ
>WENV181184927
OEKW01000477
[OEKW] metagenome; 1998
2899
2824
-
Arg
TCG
[ENA]
¢þ
>WENV181184907
OEKW01000021
[OEKW] metagenome; 1998
2994
3069
+
Asn
GTT
[ENA]
¢þ
>WENV181184915
OEKW01000098
[OEKW] metagenome; 1998
3533
3457
-
Asp
GTC
[ENA]
¢þ
>WENV181184918
OEKW01000169
[OEKW] metagenome; 1998
3917
3842
-
Trp
CCA
[ENA]
¢þ
>WENV181184920
OEKW01000249
[OEKW] metagenome; 1998
4856
4782
-
Val
GAC
[ENA]
¢þ
>WENV181184913
OEKW01000077
[OEKW] metagenome; 1998
4996
5082
+
Leu
CAA
[ENA]
¢þ
>WENV181184909
OEKW01000034
[OEKW] metagenome; 1998
5149
5224
+
Cys
GCA
[ENA]
¢þ
>WENV181184906
OEKW01000019
[OEKW] metagenome; 1998
5159
5085
-
Gly
GCC
[ENA]
¢þ
>WENV181184919
OEKW01000196
[OEKW] metagenome; 1998
5475
5557
+
Leu
TAG
[ENA]
¢þ
>WENV181184912
OEKW01000047
[OEKW] metagenome; 1998
8205
8131
-
Val
CAC
[ENA]
¢þ
>WENV181184908
OEKW01000026
[OEKW] metagenome; 1998
8857
8771
-
Leu
CAG
[ENA]
¢þ
>WENV181184934
OEKW01000613
[OEKW] metagenome; 1998
14144
14069
-
Phe
GAA
[ENA]
¢þ
>WENV181184935
OEKW01000617
[OEKW] metagenome; 1998
14251
14325
+
Gly
CCC
[ENA]
¢þ
>WENV181184933
OEKW01000613
[OEKW] metagenome; 1998
14363
14272
-
Ser
GCT
[ENA]
¢þ
>WENV181184926
OEKW01000476
[OEKW] metagenome; 1998
15985
16061
+
His
GTG
[ENA]
¢þ
>WENV181184932
OEKW01000613
[OEKW] metagenome; 1998
17300
17211
-
Ser
TGA
[ENA]
¢þ
>WENV181184911
OEKW01000047
[OEKW] metagenome; 1998
18345
18428
+
Leu
GAG
[ENA]
¢þ
>WENV181184925
OEKW01000453
[OEKW] metagenome; 1998
23328
23252
-
Asp
GTC
[ENA]
¢þ
>WENV181184924
OEKW01000453
[OEKW] metagenome; 1998
23526
23451
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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