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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OELM] metagenome; 1998
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185441
OELM01000542
[OELM] metagenome; 1998
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV181185438
OELM01000272
[OELM] metagenome; 1998
88
-1
-
Ser
CGA
[ENA]
¢þ
>WENV181185431
OELM01000147
[OELM] metagenome; 1998
168
242
+
Trp
CCA
[ENA]
¢þ
>WENV181185439
OELM01000431
[OELM] metagenome; 1998
291
364
+
Thr
GGT
[ENA]
¢þ
>WENV181185435
OELM01000214
[OELM] metagenome; 1998
415
342
-
Asp
GTC
[ENA]
¢þ
>WENV181185443
OELM01000699
[OELM] metagenome; 1998
446
371
-
Glu
TTC
[ENA]
¢þ
>WENV181185448
OELM01001118
[OELM] metagenome; 1998
486
561
+
Arg
CCG
[ENA]
¢þ
>WENV181185436
OELM01000219
[OELM] metagenome; 1998
513
605
+
SeC
TCA
[ENA]
¢þ
>WENV181185447
OELM01001049
[OELM] metagenome; 1998
558
475
-
Leu
CAA
[ENA]
¢þ
>WENV181185442
OELM01000571
[OELM] metagenome; 1998
664
579
-
Ser
TGA
[ENA]
¢þ
>WENV181185440
OELM01000505
[OELM] metagenome; 1998
783
854
+
Met
CAT
[ENA]
¢þ
>WENV181185432
OELM01000167
[OELM] metagenome; 1998
999
912
-
Ser
GGA
[ENA]
¢þ
>WENV181185434
OELM01000213
[OELM] metagenome; 1998
1416
1489
+
Asp
GTC
[ENA]
¢þ
>WENV181185433
OELM01000212
[OELM] metagenome; 1998
2174
2101
-
Arg
CCG
[ENA]
¢þ
>WENV181185437
OELM01000243
[OELM] metagenome; 1998
2398
2472
+
Val
GAC
[ENA]
¢þ
>WENV181185446
OELM01001049
[OELM] metagenome; 1998
2545
2463
-
Leu
GAG
[ENA]
¢þ
>WENV181185445
OELM01000931
[OELM] metagenome; 1998
3130
3058
-
Lys
TTT
[ENA]
¢þ
>WENV181185444
OELM01000910
[OELM] metagenome; 1998
3161
3088
-
Gly
GCC
[ENA]
¢þ
>WENV181185429
OELM01000058
[OELM] metagenome; 1998
3406
3333
-
Phe
GAA
[ENA]
¢þ
>WENV181185430
OELM01000144
[OELM] metagenome; 1998
5621
5694
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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