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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OELP] metagenome; 1998
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185495
OELP01000897
[OELP] metagenome; 1998
3
77
+
Val
CAC
[ENA]
¢þ
>WENV181185499
OELP01001270
[OELP] metagenome; 1998
61
135
+
Thr
GGT
[ENA]
¢þ
>WENV181185498
OELP01001247
[OELP] metagenome; 1998
74
-1
-
Phe
GAA
[ENA]
¢þ
>WENV181185506
OELP01001848
[OELP] metagenome; 1998
119
43
-
Val
TAC
[ENA]
¢þ
>WENV181185500
OELP01001270
[OELP] metagenome; 1998
142
215
+
Thr
TGT
[ENA]
¢þ
>WENV181185504
OELP01001790
[OELP] metagenome; 1998
190
116
-
Gln
CTG
[ENA]
¢þ
>WENV181185486
OELP01000030
[OELP] metagenome; 1998
195
280
+
Leu
TAA
[ENA]
¢þ
>WENV181185505
OELP01001833
[OELP] metagenome; 1998
196
120
-
Met
CAT
[ENA]
¢þ
>WENV181185501
OELP01001270
[OELP] metagenome; 1998
227
301
+
His
GTG
[ENA]
¢þ
>WENV181185503
OELP01001766
[OELP] metagenome; 1998
495
406
-
Ser
CGA
[ENA]
¢þ
>WENV181185502
OELP01001371
[OELP] metagenome; 1998
606
531
-
Ile2
CAT
[ENA]
¢þ
>WENV181185494
OELP01000811
[OELP] metagenome; 1998
927
1003
+
fMet
CAT
[ENA]
¢þ
>WENV181185508
OELP01001928
[OELP] metagenome; 1998
1012
1089
+
Leu
CAA
[ENA]
¢þ
>WENV181185496
OELP01001150
[OELP] metagenome; 1998
1051
976
-
Arg
CCT
[ENA]
¢þ
>WENV181185509
OELP01001928
[OELP] metagenome; 1998
1118
1205
+
Ser
GCT
[ENA]
¢þ
>WENV181185491
OELP01000398
[OELP] metagenome; 1998
1283
1209
-
Cys
GCA
[ENA]
¢þ
>WENV181185510
OELP01001928
[OELP] metagenome; 1998
1302
1392
+
Tyr
GTA
[ENA]
¢þ
>WENV181185511
OELP01001928
[OELP] metagenome; 1998
1397
1473
+
Leu
TAG
[ENA]
¢þ
>WENV181185493
OELP01000630
[OELP] metagenome; 1998
1533
1608
+
His
GTG
[ENA]
¢þ
>WENV181185497
OELP01001218
[OELP] metagenome; 1998
1636
1710
+
Gly
CCC
[ENA]
¢þ
>WENV181185507
OELP01001885
[OELP] metagenome; 1998
1691
1617
-
Pro
TGG
[ENA]
¢þ
>WENV181185485
OELP01000024
[OELP] metagenome; 1998
1830
1737
-
Ser
GCT
[ENA]
¢þ
>WENV181185487
OELP01000064
[OELP] metagenome; 1998
2015
2091
+
Arg
TCT
[ENA]
¢þ
>WENV181185490
OELP01000233
[OELP] metagenome; 1998
2060
2136
+
Pro
CGG
[ENA]
¢þ
>WENV181185489
OELP01000226
[OELP] metagenome; 1998
2629
2545
-
Leu
GAG
[ENA]
¢þ
>WENV181185492
OELP01000494
[OELP] metagenome; 1998
2819
2744
-
Lys
TTT
[ENA]
¢þ
>WENV181185488
OELP01000064
[OELP] metagenome; 1998
4457
4371
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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