This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OEMC] metagenome; 1998
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185854
OEMC01000142
[OEMC] metagenome; 1998
1
74
+
Gly
CCC
[ENA]
¢þ
>WENV181185851
OEMC01000116
[OEMC] metagenome; 1998
75
3
-
Glu
TTC
[ENA]
¢þ
>WENV181185858
OEMC01000213
[OEMC] metagenome; 1998
203
131
-
Arg
CCG
[ENA]
¢þ
>WENV181185842
OEMC01000077
[OEMC] metagenome; 1998
758
674
-
Leu
CAA
[ENA]
¢þ
>WENV181185861
OEMC01000261
[OEMC] metagenome; 1998
962
889
-
Phe
GAA
[ENA]
¢þ
>WENV181185863
OEMC01000331
[OEMC] metagenome; 1998
1119
1193
+
Met
CAT
[ENA]
¢þ
>WENV181185853
OEMC01000133
[OEMC] metagenome; 1998
1859
1941
+
Leu
TAG
[ENA]
¢þ
>WENV181185868
OEMC01000603
[OEMC] metagenome; 1998
2438
2509
+
Gln
TTG
[ENA]
¢þ
>WENV181185869
OEMC01000740
[OEMC] metagenome; 1998
2883
2957
+
Pro
GGG
[ENA]
¢þ
>WENV181185860
OEMC01000250
[OEMC] metagenome; 1998
3232
3306
+
Asn
GTT
[ENA]
¢þ
>WENV181185840
OEMC01000036
[OEMC] metagenome; 1998
3238
3164
-
His
GTG
[ENA]
¢þ
>WENV181185867
OEMC01000569
[OEMC] metagenome; 1998
4656
4728
+
fMet
CAT
[ENA]
¢þ
>WENV181185852
OEMC01000131
[OEMC] metagenome; 1998
6600
6527
-
Lys
TTT
[ENA]
¢þ
>WENV181185839
OEMC01000013
[OEMC] metagenome; 1998
6809
6734
-
Val
TAC
[ENA]
¢þ
>WENV181185850
OEMC01000112
[OEMC] metagenome; 1998
7081
6997
-
Leu
CAG
[ENA]
¢þ
>WENV181185866
OEMC01000423
[OEMC] metagenome; 1998
8842
8913
+
Cys
GCA
[ENA]
¢þ
>WENV181185848
OEMC01000112
[OEMC] metagenome; 1998
9719
9792
+
Gly
GCC
[ENA]
¢þ
>WENV181185862
OEMC01000311
[OEMC] metagenome; 1998
9759
9833
+
Asp
GTC
[ENA]
¢þ
>WENV181185849
OEMC01000112
[OEMC] metagenome; 1998
9956
10042
+
Leu
TAA
[ENA]
¢þ
>WENV181185841
OEMC01000070
[OEMC] metagenome; 1998
10146
10072
-
Ile2
CAT
[ENA]
¢þ
>WENV181185864
OEMC01000354
[OEMC] metagenome; 1998
11007
10933
-
Arg
CCT
[ENA]
¢þ
>WENV181185859
OEMC01000237
[OEMC] metagenome; 1998
11270
11183
-
Ser
GGA
[ENA]
¢þ
>WENV181185843
OEMC01000093
[OEMC] metagenome; 1998
14205
14278
+
Thr
TGT
[ENA]
¢þ
>WENV181185844
OEMC01000093
[OEMC] metagenome; 1998
14284
14367
+
Tyr
GTA
[ENA]
¢þ
>WENV181185845
OEMC01000093
[OEMC] metagenome; 1998
14399
14472
+
Gly
TCC
[ENA]
¢þ
>WENV181185846
OEMC01000093
[OEMC] metagenome; 1998
14557
14629
+
Thr
GGT
[ENA]
¢þ
>WENV181185865
OEMC01000376
[OEMC] metagenome; 1998
15268
15195
-
Thr
CGT
[ENA]
¢þ
>WENV181185847
OEMC01000093
[OEMC] metagenome; 1998
16081
16152
+
Trp
CCA
[ENA]
¢þ
>WENV181185857
OEMC01000170
[OEMC] metagenome; 1998
16133
16058
-
Val
GAC
[ENA]
¢þ
>WENV181185856
OEMC01000149
[OEMC] metagenome; 1998
18733
18642
-
Ser
GCT
[ENA]
¢þ
>WENV181185855
OEMC01000149
[OEMC] metagenome; 1998
18904
18830
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK