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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEMD] metagenome; 1998
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185873
OEMD01000080
[OEMD] metagenome; 1998
69
144
+
Ala
TGC
[ENA]
¢þ
>WENV181185881
OEMD01000386
[OEMD] metagenome; 1998
220
295
+
Thr
GGT
[ENA]
¢þ
>WENV181185879
OEMD01000348
[OEMD] metagenome; 1998
265
340
+
Arg
TCT
[ENA]
¢þ
>WENV181185890
OEMD01000621
[OEMD] metagenome; 1998
444
371
-
Asp
GTC
[ENA]
¢þ
>WENV181185874
OEMD01000099
[OEMD] metagenome; 1998
973
1058
+
Ser
TGA
[ENA]
¢þ
>WENV181185872
OEMD01000070
[OEMD] metagenome; 1998
988
916
-
Gln
CTG
[ENA]
¢þ
>WENV181185871
OEMD01000002
[OEMD] metagenome; 1998
1339
1264
-
Arg
TCG
[ENA]
¢þ
>WENV181185870
OEMD01000002
[OEMD] metagenome; 1998
1498
1426
-
His
GTG
[ENA]
¢þ
>WENV181185882
OEMD01000502
[OEMD] metagenome; 1998
1808
1879
+
Val
TAC
[ENA]
¢þ
>WENV181185876
OEMD01000166
[OEMD] metagenome; 1998
1888
1817
-
Val
CAC
[ENA]
¢þ
>WENV181185887
OEMD01000521
[OEMD] metagenome; 1998
2020
2094
+
Val
GAC
[ENA]
¢þ
>WENV181185895
OEMD01000788
[OEMD] metagenome; 1998
2037
2110
+
Thr
CGT
[ENA]
¢þ
>WENV181185893
OEMD01000708
[OEMD] metagenome; 1998
2053
2142
+
Ser
GCT
[ENA]
¢þ
>WENV181185886
OEMD01000511
[OEMD] metagenome; 1998
2257
2340
+
Tyr
GTA
[ENA]
¢þ
>WENV181185885
OEMD01000509
[OEMD] metagenome; 1998
2266
2179
-
Ser
CGA
[ENA]
¢þ
>WENV181185878
OEMD01000255
[OEMD] metagenome; 1998
2321
2247
-
Gly
GCC
[ENA]
¢þ
>WENV181185889
OEMD01000608
[OEMD] metagenome; 1998
2577
2651
+
Arg
CCG
[ENA]
¢þ
>WENV181185891
OEMD01000687
[OEMD] metagenome; 1998
2951
2879
-
Lys
TTT
[ENA]
¢þ
>WENV181185877
OEMD01000205
[OEMD] metagenome; 1998
3671
3744
+
Glu
TTC
[ENA]
¢þ
>WENV181185894
OEMD01000740
[OEMD] metagenome; 1998
4031
4105
+
Ala
GGC
[ENA]
¢þ
>WENV181185884
OEMD01000508
[OEMD] metagenome; 1998
4225
4152
-
Ile
GAT
[ENA]
¢þ
>WENV181185883
OEMD01000508
[OEMD] metagenome; 1998
4504
4432
-
Ala
TGC
[ENA]
¢þ
>WENV181185880
OEMD01000380
[OEMD] metagenome; 1998
4573
4500
-
Ala
CGC
[ENA]
¢þ
>WENV181185888
OEMD01000527
[OEMD] metagenome; 1998
4778
4866
+
Leu
TAA
[ENA]
¢þ
>WENV181185875
OEMD01000162
[OEMD] metagenome; 1998
5280
5363
+
Leu
CAG
[ENA]
¢þ
>WENV181185892
OEMD01000700
[OEMD] metagenome; 1998
12617
12700
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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