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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEME] metagenome; 1998
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185901
OEME01000547
[OEME] metagenome; 1998
14
89
+
Met
CAT
[ENA]
¢þ
>WENV181185914
OEME01001643
[OEME] metagenome; 1998
83
7
-
Arg
CCG
[ENA]
¢þ
>WENV181185897
OEME01000153
[OEME] metagenome; 1998
89
2
-
Leu
CAA
[ENA]
¢þ
>WENV181185904
OEME01000732
[OEME] metagenome; 1998
95
167
+
Gly
GCC
[ENA]
¢þ
>WENV181185902
OEME01000562
[OEME] metagenome; 1998
135
49
-
Leu
CAG
[ENA]
¢þ
>WENV181185909
OEME01000832
[OEME] metagenome; 1998
139
65
-
Ile2
CAT
[ENA]
¢þ
>WENV181185905
OEME01000732
[OEME] metagenome; 1998
183
254
+
Cys
GCA
[ENA]
¢þ
>WENV181185908
OEME01000832
[OEME] metagenome; 1998
291
219
-
Gly
TCC
[ENA]
¢þ
>WENV181185912
OEME01001264
[OEME] metagenome; 1998
336
262
-
Val
GAC
[ENA]
¢þ
>WENV181185907
OEME01000832
[OEME] metagenome; 1998
378
454
+
Arg
GCG
[ENA]
¢þ
>WENV181185900
OEME01000503
[OEME] metagenome; 1998
539
613
+
Arg
TCG
[ENA]
¢þ
>WENV181185899
OEME01000464
[OEME] metagenome; 1998
584
502
-
Leu
GAG
[ENA]
¢þ
>WENV181185906
OEME01000763
[OEME] metagenome; 1998
607
533
-
Arg
TCT
[ENA]
¢þ
>WENV181185913
OEME01001453
[OEME] metagenome; 1998
718
645
-
Arg
CCT
[ENA]
¢þ
>WENV181185898
OEME01000371
[OEME] metagenome; 1998
870
796
-
Thr
CGT
[ENA]
¢þ
>WENV181185903
OEME01000583
[OEME] metagenome; 1998
981
1054
+
Glu
CTC
[ENA]
¢þ
>WENV181185915
OEME01001703
[OEME] metagenome; 1998
1164
1237
+
Glu
TTC
[ENA]
¢þ
>WENV181185910
OEME01001052
[OEME] metagenome; 1998
1358
1442
+
Leu
TAA
[ENA]
¢þ
>WENV181185911
OEME01001177
[OEME] metagenome; 1998
3242
3316
+
Val
CAC
[ENA]
¢þ
>WENV181185896
OEME01000034
[OEME] metagenome; 1998
5611
5524
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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