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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEMH] metagenome; 1998
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185943
OEMH01001155
[OEMH] metagenome; 1998
19
92
+
Thr
GGT
[ENA]
¢þ
>WENV181185939
OEMH01000181
[OEMH] metagenome; 1998
76
1
-
Pro
GGG
[ENA]
¢þ
>WENV181185944
OEMH01001155
[OEMH] metagenome; 1998
97
170
+
Met
CAT
[ENA]
¢þ
>WENV181185946
OEMH01001169
[OEMH] metagenome; 1998
138
213
+
Pro
GGG
[ENA]
¢þ
>WENV181185937
OEMH01000075
[OEMH] metagenome; 1998
202
276
+
Arg
TCT
[ENA]
¢þ
>WENV181185951
OEMH01001697
[OEMH] metagenome; 1998
345
271
-
His
GTG
[ENA]
¢þ
>WENV181185940
OEMH01000252
[OEMH] metagenome; 1998
538
619
+
Tyr
GTA
[ENA]
¢þ
>WENV181185952
OEMH01002434
[OEMH] metagenome; 1998
552
480
-
Pro
TGG
[ENA]
¢þ
>WENV181185941
OEMH01000419
[OEMH] metagenome; 1998
559
632
+
Arg
TCT
[ENA]
¢þ
>WENV181185938
OEMH01000147
[OEMH] metagenome; 1998
598
673
+
Gly
GCC
[ENA]
¢þ
>WENV181185956
OEMH01003333
[OEMH] metagenome; 1998
625
697
+
Val
CAC
[ENA]
¢þ
>WENV181185947
OEMH01001197
[OEMH] metagenome; 1998
1062
1134
+
Cys
GCA
[ENA]
¢þ
>WENV181185950
OEMH01001609
[OEMH] metagenome; 1998
1161
1234
+
Ile2
CAT
[ENA]
¢þ
>WENV181185945
OEMH01001155
[OEMH] metagenome; 1998
1483
1556
+
Trp
CCA
[ENA]
¢þ
>WENV181185953
OEMH01002717
[OEMH] metagenome; 1998
1487
1413
-
Gly
TCC
[ENA]
¢þ
>WENV181185954
OEMH01002770
[OEMH] metagenome; 1998
2041
1969
-
Arg
CCG
[ENA]
¢þ
>WENV181185955
OEMH01002898
[OEMH] metagenome; 1998
2057
1984
-
Glu
CTC
[ENA]
¢þ
>WENV181185949
OEMH01001392
[OEMH] metagenome; 1998
2401
2486
+
Leu
GAG
[ENA]
¢þ
>WENV181185948
OEMH01001275
[OEMH] metagenome; 1998
2472
2398
-
Ala
GGC
[ENA]
¢þ
>WENV181185942
OEMH01000562
[OEMH] metagenome; 1998
2984
3055
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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