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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OEMJ] metagenome; 1998
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181185988
OEMJ01000456
[OEMJ] metagenome; 1998
53
127
+
Arg
CCG
[ENA]
¢þ
>WENV181185989
OEMJ01000602
[OEMJ] metagenome; 1998
136
61
-
Met
CAT
[ENA]
¢þ
>WENV181185991
OEMJ01000963
[OEMJ] metagenome; 1998
790
716
-
Asn
GTT
[ENA]
¢þ
>WENV181185985
OEMJ01000006
[OEMJ] metagenome; 1998
975
1057
+
Leu
TAG
[ENA]
¢þ
>WENV181185992
OEMJ01001438
[OEMJ] metagenome; 1998
1174
1091
-
Leu
TAA
[ENA]
¢þ
>WENV181185990
OEMJ01000829
[OEMJ] metagenome; 1998
1654
1726
+
Cys
GCA
[ENA]
¢þ
>WENV181185986
OEMJ01000027
[OEMJ] metagenome; 1998
2072
2159
+
Ser
GGA
[ENA]
¢þ
>WENV181185987
OEMJ01000052
[OEMJ] metagenome; 1998
4886
4959
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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