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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEMN] metagenome; 1998
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181186094
OEMN01000360
[OEMN] metagenome; 1998
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV181186096
OEMN01000502
[OEMN] metagenome; 1998
76
2
-
Asn
GTT
[ENA]
¢þ
>WENV181186097
OEMN01000558
[OEMN] metagenome; 1998
77
171
+
SeC
TCA
[ENA]
¢þ
>WENV181186087
OEMN01000041
[OEMN] metagenome; 1998
755
828
+
Ile2
CAT
[ENA]
¢þ
>WENV181186093
OEMN01000230
[OEMN] metagenome; 1998
1082
1007
-
Lys
TTT
[ENA]
¢þ
>WENV181186108
OEMN01001632
[OEMN] metagenome; 1998
1099
1024
-
Thr
GGT
[ENA]
¢þ
>WENV181186107
OEMN01001585
[OEMN] metagenome; 1998
1100
1026
-
Val
CAC
[ENA]
¢þ
>WENV181186101
OEMN01001017
[OEMN] metagenome; 1998
1245
1317
+
Lys
TTT
[ENA]
¢þ
>WENV181186100
OEMN01001002
[OEMN] metagenome; 1998
1252
1179
-
Gly
TCC
[ENA]
¢þ
>WENV181186089
OEMN01000165
[OEMN] metagenome; 1998
1267
1341
+
Gly
GCC
[ENA]
¢þ
>WENV181186095
OEMN01000441
[OEMN] metagenome; 1998
1330
1242
-
Leu
TAA
[ENA]
¢þ
>WENV181186090
OEMN01000165
[OEMN] metagenome; 1998
1389
1462
+
Cys
GCA
[ENA]
¢þ
>WENV181186104
OEMN01001311
[OEMN] metagenome; 1998
1486
1400
-
Leu
GAG
[ENA]
¢þ
>WENV181186091
OEMN01000193
[OEMN] metagenome; 1998
1770
1841
+
Val
TAC
[ENA]
¢þ
>WENV181186086
OEMN01000026
[OEMN] metagenome; 1998
1816
1892
+
Arg
CCT
[ENA]
¢þ
>WENV181186092
OEMN01000193
[OEMN] metagenome; 1998
1893
1969
+
Asp
GTC
[ENA]
¢þ
>WENV181186098
OEMN01000603
[OEMN] metagenome; 1998
3005
2929
-
Val
GAC
[ENA]
¢þ
>WENV181186102
OEMN01001181
[OEMN] metagenome; 1998
4463
4537
+
His
GTG
[ENA]
¢þ
>WENV181186088
OEMN01000052
[OEMN] metagenome; 1998
4549
4475
-
Gln
TTG
[ENA]
¢þ
>WENV181186099
OEMN01000835
[OEMN] metagenome; 1998
4658
4746
+
Leu
CAA
[ENA]
¢þ
>WENV181186103
OEMN01001241
[OEMN] metagenome; 1998
4884
4810
-
Glu
CTC
[ENA]
¢þ
>WENV181186105
OEMN01001426
[OEMN] metagenome; 1998
5039
5128
+
Ser
TGA
[ENA]
¢þ
>WENV181186109
OEMN01001654
[OEMN] metagenome; 1998
6292
6216
-
Pro
CGG
[ENA]
¢þ
>WENV181186110
OEMN01001780
[OEMN] metagenome; 1998
8593
8518
-
Ala
CGC
[ENA]
¢þ
>WENV181186106
OEMN01001462
[OEMN] metagenome; 1998
12732
12657
-
Ala
GGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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