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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEMP] metagenome; 1998
HIT:
34 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181186169
OEMP01002069
[OEMP] metagenome; 1998
5
80
+
Phe
GAA
[ENA]
¢þ
>WENV181186172
OEMP01003011
[OEMP] metagenome; 1998
21
95
+
Asn
GTT
[ENA]
¢þ
>WENV181186159
OEMP01000792
[OEMP] metagenome; 1998
23
96
+
Arg
CCG
[ENA]
¢þ
>WENV181186148
OEMP01000778
[OEMP] metagenome; 1998
61
137
+
Leu
CAA
[ENA]
¢þ
>WENV181186144
OEMP01000249
[OEMP] metagenome; 1998
88
16
-
Val
CAC
[ENA]
¢þ
>WENV181186161
OEMP01001288
[OEMP] metagenome; 1998
147
72
-
Ala
GGC
[ENA]
¢þ
>WENV181186146
OEMP01000345
[OEMP] metagenome; 1998
175
101
-
Met
CAT
[ENA]
¢þ
>WENV181186149
OEMP01000778
[OEMP] metagenome; 1998
205
278
+
Gly
GCC
[ENA]
¢þ
>WENV181186170
OEMP01002247
[OEMP] metagenome; 1998
298
395
+
SeC
TCA
[ENA]
¢þ
>WENV181186145
OEMP01000345
[OEMP] metagenome; 1998
349
274
-
fMet
CAT
[ENA]
¢þ
>WENV181186164
OEMP01002003
[OEMP] metagenome; 1998
370
455
+
Tyr
GTA
[ENA]
¢þ
>WENV181186165
OEMP01002003
[OEMP] metagenome; 1998
459
530
+
Trp
CCA
[ENA]
¢þ
>WENV181186150
OEMP01000778
[OEMP] metagenome; 1998
489
562
+
Leu
TAA
[ENA]
¢þ
>WENV181186143
OEMP01000177
[OEMP] metagenome; 1998
590
665
+
Trp
CCA
[ENA]
¢þ
>WENV181186166
OEMP01002003
[OEMP] metagenome; 1998
624
707
+
Ser
GGA
[ENA]
¢þ
>WENV181186167
OEMP01002003
[OEMP] metagenome; 1998
712
797
+
Ser
GCT
[ENA]
¢þ
>WENV181186151
OEMP01000778
[OEMP] metagenome; 1998
751
824
+
His
GTG
[ENA]
¢þ
>WENV181186171
OEMP01002978
[OEMP] metagenome; 1998
759
674
-
Leu
CAG
[ENA]
¢þ
>WENV181186163
OEMP01001346
[OEMP] metagenome; 1998
778
702
-
Pro
CGG
[ENA]
¢þ
>WENV181186152
OEMP01000778
[OEMP] metagenome; 1998
830
905
+
Gln
CTG
[ENA]
¢þ
>WENV181186141
OEMP01000123
[OEMP] metagenome; 1998
879
953
+
Gln
TTG
[ENA]
¢þ
>WENV181186139
OEMP01000089
[OEMP] metagenome; 1998
915
1004
+
Ser
CGA
[ENA]
¢þ
>WENV181186160
OEMP01000792
[OEMP] metagenome; 1998
1057
966
-
Ser
GCT
[ENA]
¢þ
>WENV181186140
OEMP01000089
[OEMP] metagenome; 1998
1110
1199
+
Ser
GGA
[ENA]
¢þ
>WENV181186168
OEMP01002003
[OEMP] metagenome; 1998
1121
1197
+
Leu
TAG
[ENA]
¢þ
>WENV181186153
OEMP01000778
[OEMP] metagenome; 1998
1152
1225
+
Asp
GTC
[ENA]
¢þ
>WENV181186162
OEMP01001293
[OEMP] metagenome; 1998
1183
1257
+
Val
GAC
[ENA]
¢þ
>WENV181186154
OEMP01000778
[OEMP] metagenome; 1998
1249
1325
+
Arg
TCT
[ENA]
¢þ
>WENV181186142
OEMP01000172
[OEMP] metagenome; 1998
1266
1350
+
Leu
TAG
[ENA]
¢þ
>WENV181186155
OEMP01000778
[OEMP] metagenome; 1998
1327
1399
+
Lys
CTT
[ENA]
¢þ
>WENV181186156
OEMP01000778
[OEMP] metagenome; 1998
1478
1566
+
Ile
TAT
[ENA]
¢þ
>WENV181186147
OEMP01000366
[OEMP] metagenome; 1998
1528
1615
+
Leu
TAA
[ENA]
¢þ
>WENV181186157
OEMP01000778
[OEMP] metagenome; 1998
1614
1686
+
Lys
TTT
[ENA]
¢þ
>WENV181186158
OEMP01000778
[OEMP] metagenome; 1998
2014
2086
+
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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