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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OEOQ] soil metagenome; soil
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190286
OEOQ01000293
[OEOQ] soil metagenome; soil
1
76
+
Gly
GCC
[ENA]
¢þ
>WENV181190285
OEOQ01000292
[OEOQ] soil metagenome; soil
18
93
+
Asn
GTT
[ENA]
¢þ
>WENV181190250
OEOQ01000030
[OEOQ] soil metagenome; soil
75
151
+
fMet
CAT
[ENA]
¢þ
>WENV181190271
OEOQ01000098
[OEOQ] soil metagenome; soil
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV181190284
OEOQ01000197
[OEOQ] soil metagenome; soil
127
202
+
Glu
TTC
[ENA]
¢þ
>WENV181190265
OEOQ01000056
[OEOQ] soil metagenome; soil
137
213
+
Asp
GTC
[ENA]
¢þ
>WENV181190235
OEOQ01000012
[OEOQ] soil metagenome; soil
137
213
+
Asp
GTC
[ENA]
¢þ
>WENV181190231
OEOQ01000005
[OEOQ] soil metagenome; soil
149
57
-
Ser
GCT
[ENA]
¢þ
>WENV181190261
OEOQ01000041
[OEOQ] soil metagenome; soil
176
251
+
Lys
TTT
[ENA]
¢þ
>WENV181190283
OEOQ01000174
[OEOQ] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV181190236
OEOQ01000012
[OEOQ] soil metagenome; soil
222
297
+
Trp
CCA
[ENA]
¢þ
>WENV181190282
OEOQ01000174
[OEOQ] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV181190280
OEOQ01000121
[OEOQ] soil metagenome; soil
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV181190262
OEOQ01000041
[OEOQ] soil metagenome; soil
384
459
+
Lys
TTT
[ENA]
¢þ
>WENV181190279
OEOQ01000121
[OEOQ] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV181190278
OEOQ01000121
[OEOQ] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV181190277
OEOQ01000121
[OEOQ] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV181190268
OEOQ01000081
[OEOQ] soil metagenome; soil
1790
1865
+
Asn
GTT
[ENA]
¢þ
>WENV181190270
OEOQ01000094
[OEOQ] soil metagenome; soil
1846
1759
-
Ser
GGA
[ENA]
¢þ
>WENV181190276
OEOQ01000117
[OEOQ] soil metagenome; soil
1983
2059
+
Pro
GGG
[ENA]
¢þ
>WENV181190269
OEOQ01000091
[OEOQ] soil metagenome; soil
2112
2036
-
Arg
TCT
[ENA]
¢þ
>WENV181190272
OEOQ01000111
[OEOQ] soil metagenome; soil
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV181190275
OEOQ01000115
[OEOQ] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV181190274
OEOQ01000115
[OEOQ] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV181190281
OEOQ01000123
[OEOQ] soil metagenome; soil
3605
3689
+
Tyr
GTA
[ENA]
¢þ
>WENV181190273
OEOQ01000115
[OEOQ] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV181190264
OEOQ01000051
[OEOQ] soil metagenome; soil
6931
7006
+
Phe
GAA
[ENA]
¢þ
>WENV181190260
OEOQ01000040
[OEOQ] soil metagenome; soil
7568
7494
-
Sup
CTA
[ENA]
¢þ
>WENV181190259
OEOQ01000040
[OEOQ] soil metagenome; soil
7680
7606
-
Gln
CTG
[ENA]
¢þ
>WENV181190258
OEOQ01000040
[OEOQ] soil metagenome; soil
7804
7728
-
Met
CAT
[ENA]
¢þ
>WENV181190257
OEOQ01000040
[OEOQ] soil metagenome; soil
7894
7820
-
Gln
TTG
[ENA]
¢þ
>WENV181190256
OEOQ01000040
[OEOQ] soil metagenome; soil
8002
7918
-
Leu
TAG
[ENA]
¢þ
>WENV181190255
OEOQ01000040
[OEOQ] soil metagenome; soil
8088
8012
-
Met
CAT
[ENA]
¢þ
>WENV181190266
OEOQ01000056
[OEOQ] soil metagenome; soil
8140
8216
+
Asp
GTC
[ENA]
¢þ
>WENV181190232
OEOQ01000006
[OEOQ] soil metagenome; soil
14461
14377
-
Leu
CAA
[ENA]
¢þ
>WENV181190267
OEOQ01000069
[OEOQ] soil metagenome; soil
19174
19247
+
Gly
CCC
[ENA]
¢þ
>WENV181190263
OEOQ01000043
[OEOQ] soil metagenome; soil
21207
21283
+
Val
GAC
[ENA]
¢þ
>WENV181190248
OEOQ01000023
[OEOQ] soil metagenome; soil
25806
25731
-
Ile2
CAT
[ENA]
¢þ
>WENV181190237
OEOQ01000012
[OEOQ] soil metagenome; soil
35640
35716
+
Arg
CCG
[ENA]
¢þ
>WENV181190238
OEOQ01000012
[OEOQ] soil metagenome; soil
35775
35850
+
His
GTG
[ENA]
¢þ
>WENV181190239
OEOQ01000012
[OEOQ] soil metagenome; soil
35871
35957
+
Leu
CAG
[ENA]
¢þ
>WENV181190240
OEOQ01000012
[OEOQ] soil metagenome; soil
36000
36076
+
Pro
TGG
[ENA]
¢þ
>WENV181190254
OEOQ01000039
[OEOQ] soil metagenome; soil
40076
39987
-
Ser
CGA
[ENA]
¢þ
>WENV181190253
OEOQ01000035
[OEOQ] soil metagenome; soil
41943
41857
-
Leu
TAA
[ENA]
¢þ
>WENV181190252
OEOQ01000035
[OEOQ] soil metagenome; soil
42029
41956
-
Cys
GCA
[ENA]
¢þ
>WENV181190251
OEOQ01000032
[OEOQ] soil metagenome; soil
42311
42235
-
Pro
CGG
[ENA]
¢þ
>WENV181190245
OEOQ01000019
[OEOQ] soil metagenome; soil
43470
43556
+
Leu
GAG
[ENA]
¢þ
>WENV181190246
OEOQ01000019
[OEOQ] soil metagenome; soil
47339
47415
+
fMet
CAT
[ENA]
¢þ
>WENV181190242
OEOQ01000018
[OEOQ] soil metagenome; soil
49569
49655
+
Leu
CAG
[ENA]
¢þ
>WENV181190243
OEOQ01000018
[OEOQ] soil metagenome; soil
49684
49770
+
Leu
CAG
[ENA]
¢þ
>WENV181190244
OEOQ01000018
[OEOQ] soil metagenome; soil
49805
49891
+
Leu
CAG
[ENA]
¢þ
>WENV181190249
OEOQ01000025
[OEOQ] soil metagenome; soil
51664
51589
-
Ile2
CAT
[ENA]
¢þ
>WENV181190247
OEOQ01000023
[OEOQ] soil metagenome; soil
57829
57753
-
Arg
ACG
[ENA]
¢þ
>WENV181190241
OEOQ01000017
[OEOQ] soil metagenome; soil
69550
69624
+
Arg
CCT
[ENA]
¢þ
>WENV181190233
OEOQ01000009
[OEOQ] soil metagenome; soil
92202
92277
+
Phe
GAA
[ENA]
¢þ
>WENV181190234
OEOQ01000010
[OEOQ] soil metagenome; soil
97067
96980
-
Ser
TGA
[ENA]
¢þ
>WENV181190230
OEOQ01000002
[OEOQ] soil metagenome; soil
105275
105181
-
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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