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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OEOR] soil metagenome; soil
HIT:
58 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190344
OEOR01000571
[OEOR] soil metagenome; soil
1
76
+
Gly
GCC
[ENA]
¢þ
>WENV181190343
OEOR01000554
[OEOR] soil metagenome; soil
1
76
+
Glu
TTC
[ENA]
¢þ
>WENV181190341
OEOR01000303
[OEOR] soil metagenome; soil
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV181190310
OEOR01000057
[OEOR] soil metagenome; soil
8
95
+
Ser
GGA
[ENA]
¢þ
>WENV181190300
OEOR01000015
[OEOR] soil metagenome; soil
90
163
+
Cys
GCA
[ENA]
¢þ
>WENV181190301
OEOR01000015
[OEOR] soil metagenome; soil
176
262
+
Leu
TAA
[ENA]
¢þ
>WENV181190319
OEOR01000105
[OEOR] soil metagenome; soil
202
277
+
Lys
TTT
[ENA]
¢þ
>WENV181190342
OEOR01000303
[OEOR] soil metagenome; soil
226
301
+
Val
TAC
[ENA]
¢þ
>WENV181190331
OEOR01000156
[OEOR] soil metagenome; soil
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV181190320
OEOR01000105
[OEOR] soil metagenome; soil
410
485
+
Lys
TTT
[ENA]
¢þ
>WENV181190330
OEOR01000156
[OEOR] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV181190329
OEOR01000156
[OEOR] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV181190328
OEOR01000156
[OEOR] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV181190337
OEOR01000194
[OEOR] soil metagenome; soil
1242
1334
+
Ser
GCT
[ENA]
¢þ
>WENV181190338
OEOR01000194
[OEOR] soil metagenome; soil
1338
1414
+
Arg
ACG
[ENA]
¢þ
>WENV181190339
OEOR01000194
[OEOR] soil metagenome; soil
1613
1689
+
Arg
ACG
[ENA]
¢þ
>WENV181190340
OEOR01000194
[OEOR] soil metagenome; soil
1752
1828
+
Arg
ACG
[ENA]
¢þ
>WENV181190322
OEOR01000116
[OEOR] soil metagenome; soil
2222
2146
-
Asp
GTC
[ENA]
¢þ
>WENV181190326
OEOR01000138
[OEOR] soil metagenome; soil
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV181190327
OEOR01000143
[OEOR] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV181190336
OEOR01000173
[OEOR] soil metagenome; soil
3313
3238
-
Ala
TGC
[ENA]
¢þ
>WENV181190335
OEOR01000173
[OEOR] soil metagenome; soil
3432
3356
-
Ile
GAT
[ENA]
¢þ
>WENV181190334
OEOR01000164
[OEOR] soil metagenome; soil
3605
3689
+
Tyr
GTA
[ENA]
¢þ
>WENV181190333
OEOR01000158
[OEOR] soil metagenome; soil
4009
3935
-
Sup
CTA
[ENA]
¢þ
>WENV181190332
OEOR01000158
[OEOR] soil metagenome; soil
4121
4047
-
Gln
CTG
[ENA]
¢þ
>WENV181190316
OEOR01000069
[OEOR] soil metagenome; soil
9815
9726
-
Ser
CGA
[ENA]
¢þ
>WENV181190323
OEOR01000117
[OEOR] soil metagenome; soil
9945
10021
+
Met
CAT
[ENA]
¢þ
>WENV181190324
OEOR01000117
[OEOR] soil metagenome; soil
10031
10115
+
Leu
TAG
[ENA]
¢þ
>WENV181190325
OEOR01000117
[OEOR] soil metagenome; soil
10139
10213
+
Gln
TTG
[ENA]
¢þ
>WENV181190321
OEOR01000116
[OEOR] soil metagenome; soil
10225
10149
-
Asp
GTC
[ENA]
¢þ
>WENV181190314
OEOR01000069
[OEOR] soil metagenome; soil
10807
10882
+
Asn
GTT
[ENA]
¢þ
>WENV181190312
OEOR01000060
[OEOR] soil metagenome; soil
10901
10825
-
Val
GAC
[ENA]
¢þ
>WENV181190311
OEOR01000060
[OEOR] soil metagenome; soil
10982
10906
-
Val
GAC
[ENA]
¢þ
>WENV181190307
OEOR01000039
[OEOR] soil metagenome; soil
17124
17199
+
Phe
GAA
[ENA]
¢þ
>WENV181190308
OEOR01000043
[OEOR] soil metagenome; soil
18121
18208
+
Ser
TGA
[ENA]
¢þ
>WENV181190302
OEOR01000017
[OEOR] soil metagenome; soil
19433
19508
+
Phe
GAA
[ENA]
¢þ
>WENV181190317
OEOR01000071
[OEOR] soil metagenome; soil
23080
23155
+
Lys
TTT
[ENA]
¢þ
>WENV181190318
OEOR01000071
[OEOR] soil metagenome; soil
23291
23366
+
Val
TAC
[ENA]
¢þ
>WENV181190315
OEOR01000069
[OEOR] soil metagenome; soil
24360
24285
-
Asn
GTT
[ENA]
¢þ
>WENV181190313
OEOR01000065
[OEOR] soil metagenome; soil
24950
25026
+
Pro
CGG
[ENA]
¢þ
>WENV181190309
OEOR01000046
[OEOR] soil metagenome; soil
31336
31261
-
Thr
GGT
[ENA]
¢þ
>WENV181190305
OEOR01000035
[OEOR] soil metagenome; soil
32022
32097
+
Ile2
CAT
[ENA]
¢þ
>WENV181190306
OEOR01000036
[OEOR] soil metagenome; soil
36578
36654
+
Pro
GGG
[ENA]
¢þ
>WENV181190304
OEOR01000034
[OEOR] soil metagenome; soil
38859
38935
+
Arg
TCT
[ENA]
¢þ
>WENV181190288
OEOR01000002
[OEOR] soil metagenome; soil
43560
43654
+
SeC
TCA
[ENA]
¢þ
>WENV181190303
OEOR01000023
[OEOR] soil metagenome; soil
47038
47111
+
Gly
CCC
[ENA]
¢þ
>WENV181190291
OEOR01000006
[OEOR] soil metagenome; soil
48084
48008
-
fMet
CAT
[ENA]
¢þ
>WENV181190287
OEOR01000001
[OEOR] soil metagenome; soil
48809
48733
-
fMet
CAT
[ENA]
¢þ
>WENV181190299
OEOR01000011
[OEOR] soil metagenome; soil
51649
51574
-
Ile2
CAT
[ENA]
¢þ
>WENV181190290
OEOR01000006
[OEOR] soil metagenome; soil
51953
51867
-
Leu
GAG
[ENA]
¢þ
>WENV181190297
OEOR01000008
[OEOR] soil metagenome; soil
52485
52409
-
Pro
TGG
[ENA]
¢þ
>WENV181190296
OEOR01000008
[OEOR] soil metagenome; soil
52614
52528
-
Leu
CAG
[ENA]
¢þ
>WENV181190295
OEOR01000008
[OEOR] soil metagenome; soil
52710
52635
-
His
GTG
[ENA]
¢þ
>WENV181190294
OEOR01000008
[OEOR] soil metagenome; soil
52845
52769
-
Arg
CCG
[ENA]
¢þ
>WENV181190298
OEOR01000009
[OEOR] soil metagenome; soil
82608
82682
+
Arg
CCT
[ENA]
¢þ
>WENV181190293
OEOR01000008
[OEOR] soil metagenome; soil
88265
88190
-
Trp
CCA
[ENA]
¢þ
>WENV181190292
OEOR01000008
[OEOR] soil metagenome; soil
88350
88274
-
Asp
GTC
[ENA]
¢þ
>WENV181190289
OEOR01000003
[OEOR] soil metagenome; soil
103801
103885
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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