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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEPD] soil metagenome; soil
HIT:
7 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190412
OEPD01000349
[OEPD] soil metagenome; soil
78
153
+
Ile
GAT
[ENA]
¢þ
>WENV181190410
OEPD01000210
[OEPD] soil metagenome; soil
112
187
+
Ile2
CAT
[ENA]
¢þ
>WENV181190409
OEPD01000178
[OEPD] soil metagenome; soil
166
242
+
fMet
CAT
[ENA]
¢þ
>WENV181190411
OEPD01000276
[OEPD] soil metagenome; soil
177
104
-
Gly
CCC
[ENA]
¢þ
>WENV181190413
OEPD01000722
[OEPD] soil metagenome; soil
178
92
-
Leu
GAG
[ENA]
¢þ
>WENV181190408
OEPD01000135
[OEPD] soil metagenome; soil
351
257
-
SeC
TCA
[ENA]
¢þ
>WENV181190407
OEPD01000001
[OEPD] soil metagenome; soil
14269
14185
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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