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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEPN] soil metagenome; soil
HIT:
8 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190501
OEPN01000900
[OEPN] soil metagenome; soil
19
94
+
Glu
TTC
[ENA]
¢þ
>WENV181190500
OEPN01000893
[OEPN] soil metagenome; soil
41
116
+
Gly
GCC
[ENA]
¢þ
>WENV181190497
OEPN01000322
[OEPN] soil metagenome; soil
89
14
-
Val
TAC
[ENA]
¢þ
>WENV181190499
OEPN01000868
[OEPN] soil metagenome; soil
132
216
+
Tyr
GTA
[ENA]
¢þ
>WENV181190502
OEPN01001026
[OEPN] soil metagenome; soil
197
113
-
Leu
CAG
[ENA]
¢þ
>WENV181190498
OEPN01000671
[OEPN] soil metagenome; soil
225
149
-
Arg
ACG
[ENA]
¢þ
>WENV181190496
OEPN01000080
[OEPN] soil metagenome; soil
625
553
-
Thr
GGT
[ENA]
¢þ
>WENV181190495
OEPN01000004
[OEPN] soil metagenome; soil
3580
3655
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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