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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OEPP] soil metagenome; soil
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181190518
OEPP01000014
[OEPP] soil metagenome; soil
1
76
+
Gly
GCC
[ENA]
¢þ
>WENV181190540
OEPP01000064
[OEPP] soil metagenome; soil
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV181190542
OEPP01000069
[OEPP] soil metagenome; soil
2
86
+
Tyr
GTA
[ENA]
¢þ
>WENV181190564
OEPP01000459
[OEPP] soil metagenome; soil
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV181190543
OEPP01000087
[OEPP] soil metagenome; soil
65
149
+
Leu
TAG
[ENA]
¢þ
>WENV181190521
OEPP01000016
[OEPP] soil metagenome; soil
103
179
+
Asp
GTC
[ENA]
¢þ
>WENV181190519
OEPP01000014
[OEPP] soil metagenome; soil
131
204
+
Cys
GCA
[ENA]
¢þ
>WENV181190563
OEPP01000450
[OEPP] soil metagenome; soil
133
58
-
Val
TAC
[ENA]
¢þ
>WENV181190516
OEPP01000009
[OEPP] soil metagenome; soil
137
45
-
Ser
GCT
[ENA]
¢þ
>WENV181190557
OEPP01000187
[OEPP] soil metagenome; soil
171
246
+
Val
TAC
[ENA]
¢þ
>WENV181190544
OEPP01000087
[OEPP] soil metagenome; soil
173
247
+
Gln
TTG
[ENA]
¢þ
>WENV181190522
OEPP01000016
[OEPP] soil metagenome; soil
188
263
+
Trp
CCA
[ENA]
¢þ
>WENV181190561
OEPP01000209
[OEPP] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV181190562
OEPP01000253
[OEPP] soil metagenome; soil
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV181190559
OEPP01000197
[OEPP] soil metagenome; soil
202
277
+
Lys
TTT
[ENA]
¢þ
>WENV181190520
OEPP01000014
[OEPP] soil metagenome; soil
217
303
+
Leu
TAA
[ENA]
¢þ
>WENV181190558
OEPP01000187
[OEPP] soil metagenome; soil
249
324
+
Lys
TTT
[ENA]
¢þ
>WENV181190545
OEPP01000087
[OEPP] soil metagenome; soil
282
356
+
Gln
TTG
[ENA]
¢þ
>WENV181190560
OEPP01000209
[OEPP] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV181190546
OEPP01000087
[OEPP] soil metagenome; soil
372
448
+
Met
CAT
[ENA]
¢þ
>WENV181190555
OEPP01000100
[OEPP] soil metagenome; soil
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV181190554
OEPP01000100
[OEPP] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV181190547
OEPP01000087
[OEPP] soil metagenome; soil
496
570
+
Gln
CTG
[ENA]
¢þ
>WENV181190548
OEPP01000087
[OEPP] soil metagenome; soil
608
682
+
Sup
CTA
[ENA]
¢þ
>WENV181190553
OEPP01000100
[OEPP] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV181190552
OEPP01000100
[OEPP] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV181190556
OEPP01000103
[OEPP] soil metagenome; soil
1168
1244
+
Pro
GGG
[ENA]
¢þ
>WENV181190549
OEPP01000091
[OEPP] soil metagenome; soil
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV181190551
OEPP01000093
[OEPP] soil metagenome; soil
2544
2469
-
Ala
GGC
[ENA]
¢þ
>WENV181190550
OEPP01000093
[OEPP] soil metagenome; soil
2659
2584
-
Ala
GGC
[ENA]
¢þ
>WENV181190533
OEPP01000047
[OEPP] soil metagenome; soil
7905
7991
+
Leu
CAG
[ENA]
¢þ
>WENV181190534
OEPP01000047
[OEPP] soil metagenome; soil
8020
8106
+
Leu
CAG
[ENA]
¢þ
>WENV181190535
OEPP01000047
[OEPP] soil metagenome; soil
8141
8227
+
Leu
CAG
[ENA]
¢þ
>WENV181190541
OEPP01000066
[OEPP] soil metagenome; soil
8161
8248
+
Ser
GGA
[ENA]
¢þ
>WENV181190539
OEPP01000060
[OEPP] soil metagenome; soil
9688
9599
-
Ser
CGA
[ENA]
¢þ
>WENV181190537
OEPP01000060
[OEPP] soil metagenome; soil
10680
10755
+
Asn
GTT
[ENA]
¢þ
>WENV181190536
OEPP01000056
[OEPP] soil metagenome; soil
19033
18957
-
Asp
GTC
[ENA]
¢þ
>WENV181190514
OEPP01000008
[OEPP] soil metagenome; soil
19889
19814
-
Phe
GAA
[ENA]
¢þ
>WENV181190538
OEPP01000060
[OEPP] soil metagenome; soil
24233
24158
-
Asn
GTT
[ENA]
¢þ
>WENV181190529
OEPP01000023
[OEPP] soil metagenome; soil
25806
25731
-
Ile2
CAT
[ENA]
¢þ
>WENV181190510
OEPP01000006
[OEPP] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV181190507
OEPP01000005
[OEPP] soil metagenome; soil
29771
29846
+
Gly
GCC
[ENA]
¢þ
>WENV181190508
OEPP01000005
[OEPP] soil metagenome; soil
29883
29958
+
Gly
GCC
[ENA]
¢þ
>WENV181190532
OEPP01000042
[OEPP] soil metagenome; soil
33385
33461
+
Arg
TCT
[ENA]
¢þ
>WENV181190523
OEPP01000016
[OEPP] soil metagenome; soil
35606
35682
+
Arg
CCG
[ENA]
¢þ
>WENV181190524
OEPP01000016
[OEPP] soil metagenome; soil
35741
35816
+
His
GTG
[ENA]
¢þ
>WENV181190525
OEPP01000016
[OEPP] soil metagenome; soil
35837
35923
+
Leu
CAG
[ENA]
¢þ
>WENV181190526
OEPP01000016
[OEPP] soil metagenome; soil
35966
36042
+
Pro
TGG
[ENA]
¢þ
>WENV181190530
OEPP01000029
[OEPP] soil metagenome; soil
43261
43337
+
Pro
CGG
[ENA]
¢þ
>WENV181190531
OEPP01000031
[OEPP] soil metagenome; soil
48809
48733
-
fMet
CAT
[ENA]
¢þ
>WENV181190528
OEPP01000023
[OEPP] soil metagenome; soil
57829
57753
-
Arg
ACG
[ENA]
¢þ
>WENV181190527
OEPP01000023
[OEPP] soil metagenome; soil
58104
58028
-
Arg
ACG
[ENA]
¢þ
>WENV181190504
OEPP01000002
[OEPP] soil metagenome; soil
105275
105181
-
SeC
TCA
[ENA]
¢þ
>WENV181190517
OEPP01000010
[OEPP] soil metagenome; soil
105705
105618
-
Ser
TGA
[ENA]
¢þ
>WENV181190506
OEPP01000003
[OEPP] soil metagenome; soil
120878
120802
-
Val
GAC
[ENA]
¢þ
>WENV181190505
OEPP01000003
[OEPP] soil metagenome; soil
120959
120883
-
Val
GAC
[ENA]
¢þ
>WENV181190515
OEPP01000009
[OEPP] soil metagenome; soil
128879
128955
+
fMet
CAT
[ENA]
¢þ
>WENV181190512
OEPP01000006
[OEPP] soil metagenome; soil
130843
130767
-
fMet
CAT
[ENA]
¢þ
>WENV181190513
OEPP01000008
[OEPP] soil metagenome; soil
131197
131270
+
Gly
CCC
[ENA]
¢þ
>WENV181190509
OEPP01000005
[OEPP] soil metagenome; soil
133706
133790
+
Leu
CAA
[ENA]
¢þ
>WENV181190511
OEPP01000006
[OEPP] soil metagenome; soil
134712
134626
-
Leu
GAG
[ENA]
¢þ
>WENV181190503
OEPP01000001
[OEPP] soil metagenome; soil
145577
145651
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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