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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OFAX] metagenome; hydrothermal vent
HIT:
106 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181206936
OFAX01003683
[OFAX] metagenome; hydrothermal vent
35
106
+
Arg
CCT
[ENA]
¢þ
>WENV181206955
OFAX01006207
[OFAX] metagenome; hydrothermal vent
55
142
+
Ser
GGA
[ENA]
¢þ
>WENV181206903
OFAX01001129
[OFAX] metagenome; hydrothermal vent
57
142
+
Ser
GCT
[ENA]
¢þ
>WENV181206929
OFAX01003401
[OFAX] metagenome; hydrothermal vent
63
137
+
Glu
TTC
[ENA]
¢þ
>WENV181206887
OFAX01000338
[OFAX] metagenome; hydrothermal vent
65
141
+
Arg
TCT
[ENA]
¢þ
>WENV181206970
OFAX01008610
[OFAX] metagenome; hydrothermal vent
67
139
+
Asn
GTT
[ENA]
¢þ
>WENV181206898
OFAX01000592
[OFAX] metagenome; hydrothermal vent
73
158
+
Ser
TGA
[ENA]
¢þ
>WENV181206932
OFAX01003516
[OFAX] metagenome; hydrothermal vent
92
176
+
Leu
GAG
[ENA]
¢þ
>WENV181206959
OFAX01006826
[OFAX] metagenome; hydrothermal vent
105
181
+
Ile
GAT
[ENA]
¢þ
>WENV181206962
OFAX01007182
[OFAX] metagenome; hydrothermal vent
109
33
-
Met
CAT
[ENA]
¢þ
>WENV181206968
OFAX01007985
[OFAX] metagenome; hydrothermal vent
116
32
-
Ser
GCT
[ENA]
¢þ
>WENV181206945
OFAX01004719
[OFAX] metagenome; hydrothermal vent
124
208
+
Leu
CAA
[ENA]
¢þ
>WENV181206893
OFAX01000387
[OFAX] metagenome; hydrothermal vent
126
40
-
Leu
TAA
[ENA]
¢þ
>WENV181206973
OFAX01009126
[OFAX] metagenome; hydrothermal vent
127
51
-
fMet
CAT
[ENA]
¢þ
>WENV181206941
OFAX01004148
[OFAX] metagenome; hydrothermal vent
139
55
-
Leu
TAA
[ENA]
¢þ
>WENV181206943
OFAX01004426
[OFAX] metagenome; hydrothermal vent
142
69
-
Gln
TTG
[ENA]
¢þ
>WENV181206976
OFAX01009512
[OFAX] metagenome; hydrothermal vent
144
70
-
Gln
TTG
[ENA]
¢þ
>WENV181206963
OFAX01007301
[OFAX] metagenome; hydrothermal vent
146
218
+
Gln
CTG
[ENA]
¢þ
>WENV181206939
OFAX01004138
[OFAX] metagenome; hydrothermal vent
148
221
+
Gly
TCC
[ENA]
¢þ
>WENV181206971
OFAX01008724
[OFAX] metagenome; hydrothermal vent
148
230
+
Leu
TAG
[ENA]
¢þ
>WENV181206921
OFAX01002797
[OFAX] metagenome; hydrothermal vent
150
223
+
Gly
CCC
[ENA]
¢þ
>WENV181206930
OFAX01003413
[OFAX] metagenome; hydrothermal vent
151
77
-
Arg
CCT
[ENA]
¢þ
>WENV181206917
OFAX01001839
[OFAX] metagenome; hydrothermal vent
152
228
+
Ile2
CAT
[ENA]
¢þ
>WENV181206904
OFAX01001129
[OFAX] metagenome; hydrothermal vent
157
232
+
Pro
TGG
[ENA]
¢þ
>WENV181206977
OFAX01009805
[OFAX] metagenome; hydrothermal vent
162
75
-
Ser
GGA
[ENA]
¢þ
>WENV181206954
OFAX01005679
[OFAX] metagenome; hydrothermal vent
165
89
-
Arg
ACG
[ENA]
¢þ
>WENV181206965
OFAX01007329
[OFAX] metagenome; hydrothermal vent
168
94
-
Asn
GTT
[ENA]
¢þ
>WENV181206952
OFAX01005068
[OFAX] metagenome; hydrothermal vent
180
256
+
Ala
TGC
[ENA]
¢þ
>WENV181206888
OFAX01000338
[OFAX] metagenome; hydrothermal vent
182
257
+
His
GTG
[ENA]
¢þ
>WENV181206914
OFAX01001531
[OFAX] metagenome; hydrothermal vent
188
95
-
Ser
GCT
[ENA]
¢þ
>WENV181206892
OFAX01000387
[OFAX] metagenome; hydrothermal vent
211
138
-
Cys
GCA
[ENA]
¢þ
>WENV181206937
OFAX01003827
[OFAX] metagenome; hydrothermal vent
221
146
-
Lys
TTT
[ENA]
¢þ
>WENV181206978
OFAX01009838
[OFAX] metagenome; hydrothermal vent
223
299
+
Val
GAC
[ENA]
¢þ
>WENV181206946
OFAX01004924
[OFAX] metagenome; hydrothermal vent
232
308
+
Met
CAT
[ENA]
¢þ
>WENV181206975
OFAX01009512
[OFAX] metagenome; hydrothermal vent
242
168
-
Gln
TTG
[ENA]
¢þ
>WENV181206905
OFAX01001129
[OFAX] metagenome; hydrothermal vent
246
320
+
Arg
TCT
[ENA]
¢þ
>WENV181206913
OFAX01001531
[OFAX] metagenome; hydrothermal vent
250
337
+
Ser
TGA
[ENA]
¢þ
>WENV181206983
OFAX01010445
[OFAX] metagenome; hydrothermal vent
262
337
+
Phe
GAA
[ENA]
¢þ
>WENV181206889
OFAX01000338
[OFAX] metagenome; hydrothermal vent
262
338
+
Pro
TGG
[ENA]
¢þ
>WENV181206935
OFAX01003618
[OFAX] metagenome; hydrothermal vent
264
188
-
Pro
TGG
[ENA]
¢þ
>WENV181206951
OFAX01005067
[OFAX] metagenome; hydrothermal vent
271
197
-
Gln
CTG
[ENA]
¢þ
>WENV181206949
OFAX01004988
[OFAX] metagenome; hydrothermal vent
271
347
+
Val
GAC
[ENA]
¢þ
>WENV181206960
OFAX01006826
[OFAX] metagenome; hydrothermal vent
290
365
+
Ala
TGC
[ENA]
¢þ
>WENV181206940
OFAX01004148
[OFAX] metagenome; hydrothermal vent
301
219
-
Leu
TAG
[ENA]
¢þ
>WENV181206969
OFAX01008160
[OFAX] metagenome; hydrothermal vent
303
227
-
fMet
CAT
[ENA]
¢þ
>WENV181206964
OFAX01007301
[OFAX] metagenome; hydrothermal vent
304
379
+
Glu
CTC
[ENA]
¢þ
>WENV181206966
OFAX01007621
[OFAX] metagenome; hydrothermal vent
310
384
+
Val
CAC
[ENA]
¢þ
>WENV181206947
OFAX01004924
[OFAX] metagenome; hydrothermal vent
315
389
+
Gln
CTG
[ENA]
¢þ
>WENV181206953
OFAX01005318
[OFAX] metagenome; hydrothermal vent
332
407
+
Asn
GTT
[ENA]
¢þ
>WENV181206891
OFAX01000387
[OFAX] metagenome; hydrothermal vent
338
263
-
Gly
GCC
[ENA]
¢þ
>WENV181206984
OFAX01010445
[OFAX] metagenome; hydrothermal vent
345
421
+
Phe
GAA
[ENA]
¢þ
>WENV181206909
OFAX01001282
[OFAX] metagenome; hydrothermal vent
360
434
+
Ile2
CAT
[ENA]
¢þ
>WENV181206957
OFAX01006328
[OFAX] metagenome; hydrothermal vent
367
278
-
Ser
CGA
[ENA]
¢þ
>WENV181206980
OFAX01009862
[OFAX] metagenome; hydrothermal vent
381
296
-
Leu
CAG
[ENA]
¢þ
>WENV181206956
OFAX01006306
[OFAX] metagenome; hydrothermal vent
399
327
-
Glu
TTC
[ENA]
¢þ
>WENV181206958
OFAX01006742
[OFAX] metagenome; hydrothermal vent
401
488
+
Ser
CGA
[ENA]
¢þ
>WENV181206950
OFAX01005067
[OFAX] metagenome; hydrothermal vent
403
327
-
Met
CAT
[ENA]
¢þ
>WENV181206924
OFAX01003092
[OFAX] metagenome; hydrothermal vent
405
479
+
Ile
GAT
[ENA]
¢þ
>WENV181206918
OFAX01001887
[OFAX] metagenome; hydrothermal vent
408
492
+
Leu
CAA
[ENA]
¢þ
>WENV181206934
OFAX01003542
[OFAX] metagenome; hydrothermal vent
410
337
-
Lys
CTT
[ENA]
¢þ
>WENV181206972
OFAX01008790
[OFAX] metagenome; hydrothermal vent
417
499
+
Tyr
GTA
[ENA]
¢þ
>WENV181206982
OFAX01010410
[OFAX] metagenome; hydrothermal vent
425
350
-
Ile
AAT
[ENA]
¢þ
>WENV181206985
OFAX01010445
[OFAX] metagenome; hydrothermal vent
427
500
+
Phe
GAA
[ENA]
¢þ
>WENV181206948
OFAX01004924
[OFAX] metagenome; hydrothermal vent
429
503
+
Gln
CTG
[ENA]
¢þ
>WENV181206908
OFAX01001256
[OFAX] metagenome; hydrothermal vent
461
386
-
Glu
TTC
[ENA]
¢þ
>WENV181206981
OFAX01010013
[OFAX] metagenome; hydrothermal vent
471
396
-
Asn
GTT
[ENA]
¢þ
>WENV181206944
OFAX01004453
[OFAX] metagenome; hydrothermal vent
483
569
+
Leu
CAA
[ENA]
¢þ
>WENV181206925
OFAX01003092
[OFAX] metagenome; hydrothermal vent
486
560
+
Lys
TTT
[ENA]
¢þ
>WENV181206974
OFAX01009174
[OFAX] metagenome; hydrothermal vent
488
414
-
Met
CAT
[ENA]
¢þ
>WENV181206933
OFAX01003542
[OFAX] metagenome; hydrothermal vent
489
415
-
Lys
CTT
[ENA]
¢þ
>WENV181206906
OFAX01001251
[OFAX] metagenome; hydrothermal vent
490
564
+
Asp
GTC
[ENA]
¢þ
>WENV181206899
OFAX01000599
[OFAX] metagenome; hydrothermal vent
499
410
-
Ser
TGA
[ENA]
¢þ
>WENV181206967
OFAX01007660
[OFAX] metagenome; hydrothermal vent
499
424
-
Cys
GCA
[ENA]
¢þ
>WENV181206890
OFAX01000387
[OFAX] metagenome; hydrothermal vent
501
426
-
Gly
GCC
[ENA]
¢þ
>WENV181206919
OFAX01002421
[OFAX] metagenome; hydrothermal vent
506
595
+
Ser
CGA
[ENA]
¢þ
>WENV181206979
OFAX01009862
[OFAX] metagenome; hydrothermal vent
510
424
-
Leu
CAG
[ENA]
¢þ
>WENV181206907
OFAX01001256
[OFAX] metagenome; hydrothermal vent
560
485
-
Glu
TTC
[ENA]
¢þ
>WENV181206961
OFAX01007160
[OFAX] metagenome; hydrothermal vent
563
489
-
Arg
CCG
[ENA]
¢þ
>WENV181206910
OFAX01001342
[OFAX] metagenome; hydrothermal vent
585
661
+
Gln
TTG
[ENA]
¢þ
>WENV181206900
OFAX01000897
[OFAX] metagenome; hydrothermal vent
592
667
+
Gly
GCC
[ENA]
¢þ
>WENV181206916
OFAX01001799
[OFAX] metagenome; hydrothermal vent
596
672
+
Asp
GTC
[ENA]
¢þ
>WENV181206920
OFAX01002487
[OFAX] metagenome; hydrothermal vent
619
692
+
Glu
TTC
[ENA]
¢þ
>WENV181206902
OFAX01000942
[OFAX] metagenome; hydrothermal vent
624
549
-
Ala
TGC
[ENA]
¢þ
>WENV181206926
OFAX01003092
[OFAX] metagenome; hydrothermal vent
626
698
+
Pro
TGG
[ENA]
¢þ
>WENV181206923
OFAX01003036
[OFAX] metagenome; hydrothermal vent
633
558
-
Thr
CGT
[ENA]
¢þ
>WENV181206938
OFAX01004076
[OFAX] metagenome; hydrothermal vent
647
572
-
Thr
CGT
[ENA]
¢þ
>WENV181206912
OFAX01001518
[OFAX] metagenome; hydrothermal vent
650
575
-
Thr
TGT
[ENA]
¢þ
>WENV181206928
OFAX01003240
[OFAX] metagenome; hydrothermal vent
661
734
+
Ala
GGC
[ENA]
¢þ
>WENV181206915
OFAX01001701
[OFAX] metagenome; hydrothermal vent
702
627
-
Phe
GAA
[ENA]
¢þ
>WENV181206927
OFAX01003092
[OFAX] metagenome; hydrothermal vent
704
776
+
Glu
TTC
[ENA]
¢þ
>WENV181206911
OFAX01001391
[OFAX] metagenome; hydrothermal vent
712
798
+
Leu
GAG
[ENA]
¢þ
>WENV181206942
OFAX01004297
[OFAX] metagenome; hydrothermal vent
723
636
-
Ser
TGA
[ENA]
¢þ
>WENV181206901
OFAX01000942
[OFAX] metagenome; hydrothermal vent
736
660
-
Ile
GAT
[ENA]
¢þ
>WENV181206922
OFAX01003008
[OFAX] metagenome; hydrothermal vent
747
671
-
Ile
GAT
[ENA]
¢þ
>WENV181206895
OFAX01000392
[OFAX] metagenome; hydrothermal vent
759
683
-
Arg
ACG
[ENA]
¢þ
>WENV181206931
OFAX01003484
[OFAX] metagenome; hydrothermal vent
770
695
-
His
GTG
[ENA]
¢þ
>WENV181206894
OFAX01000392
[OFAX] metagenome; hydrothermal vent
864
775
-
Ser
GCT
[ENA]
¢þ
>WENV181206897
OFAX01000514
[OFAX] metagenome; hydrothermal vent
1066
1139
+
Phe
GAA
[ENA]
¢þ
>WENV181206886
OFAX01000269
[OFAX] metagenome; hydrothermal vent
1213
1142
-
Gln
TTG
[ENA]
¢þ
>WENV181206896
OFAX01000424
[OFAX] metagenome; hydrothermal vent
1364
1439
+
Trp
CCA
[ENA]
¢þ
>WENV181206882
OFAX01000030
[OFAX] metagenome; hydrothermal vent
1562
1487
-
Arg
CCT
[ENA]
¢þ
>WENV181206883
OFAX01000210
[OFAX] metagenome; hydrothermal vent
1589
1665
+
Thr
TGT
[ENA]
¢þ
>WENV181206884
OFAX01000210
[OFAX] metagenome; hydrothermal vent
1684
1765
+
Tyr
GTA
[ENA]
¢þ
>WENV181206885
OFAX01000210
[OFAX] metagenome; hydrothermal vent
1853
1926
+
Gly
TCC
[ENA]
¢þ
>WENV181206880
OFAX01000005
[OFAX] metagenome; hydrothermal vent
2864
2938
+
Ile
GAT
[ENA]
¢þ
>WENV181206881
OFAX01000005
[OFAX] metagenome; hydrothermal vent
3021
3095
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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