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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFBN] metagenome; hydrothermal vent
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181212227
OFBN01000343
[OFBN] metagenome; hydrothermal vent
1
83
+
Tyr
GTA
[ENA]
¢þ
>WENV181212257
OFBN01001821
[OFBN] metagenome; hydrothermal vent
82
156
+
Pro
GGG
[ENA]
¢þ
>WENV181212250
OFBN01001215
[OFBN] metagenome; hydrothermal vent
96
2
-
SeC
TCA
[ENA]
¢þ
>WENV181212268
OFBN01003486
[OFBN] metagenome; hydrothermal vent
127
53
-
fMet
CAT
[ENA]
¢þ
>WENV181212263
OFBN01002800
[OFBN] metagenome; hydrothermal vent
136
60
-
Asp
GTC
[ENA]
¢þ
>WENV181212265
OFBN01002912
[OFBN] metagenome; hydrothermal vent
177
252
+
Thr
CGT
[ENA]
¢þ
>WENV181212260
OFBN01002270
[OFBN] metagenome; hydrothermal vent
178
103
-
Gly
GCC
[ENA]
¢þ
>WENV181212205
OFBN01000063
[OFBN] metagenome; hydrothermal vent
186
113
-
Val
TAC
[ENA]
¢þ
>WENV181212266
OFBN01002954
[OFBN] metagenome; hydrothermal vent
192
265
+
Gly
CCC
[ENA]
¢þ
>WENV181212253
OFBN01001407
[OFBN] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212267
OFBN01003313
[OFBN] metagenome; hydrothermal vent
211
127
-
Ala
AGC
[ENA]
¢þ
>WENV181212249
OFBN01001171
[OFBN] metagenome; hydrothermal vent
212
138
-
Ile2
CAT
[ENA]
¢þ
>WENV181212212
OFBN01000138
[OFBN] metagenome; hydrothermal vent
266
193
-
Met
CAT
[ENA]
¢þ
>WENV181212238
OFBN01000545
[OFBN] metagenome; hydrothermal vent
278
204
-
Gly
TCC
[ENA]
¢þ
>WENV181212252
OFBN01001370
[OFBN] metagenome; hydrothermal vent
311
386
+
His
GTG
[ENA]
¢þ
>WENV181212248
OFBN01001171
[OFBN] metagenome; hydrothermal vent
340
415
+
Asn
GTT
[ENA]
¢þ
>WENV181212190
OFBN01000006
[OFBN] metagenome; hydrothermal vent
357
432
+
Lys
CTT
[ENA]
¢þ
>WENV181212211
OFBN01000138
[OFBN] metagenome; hydrothermal vent
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV181212258
OFBN01001949
[OFBN] metagenome; hydrothermal vent
403
315
-
Ser
GGA
[ENA]
¢þ
>WENV181212234
OFBN01000486
[OFBN] metagenome; hydrothermal vent
424
353
-
His
GTG
[ENA]
¢þ
>WENV181212259
OFBN01002270
[OFBN] metagenome; hydrothermal vent
424
496
+
Val
CAC
[ENA]
¢þ
>WENV181212262
OFBN01002800
[OFBN] metagenome; hydrothermal vent
460
386
-
Glu
TTC
[ENA]
¢þ
>WENV181212228
OFBN01000356
[OFBN] metagenome; hydrothermal vent
483
568
+
Gln
CTG
[ENA]
¢þ
>WENV181212264
OFBN01002807
[OFBN] metagenome; hydrothermal vent
492
416
-
Pro
CGG
[ENA]
¢þ
>WENV181212233
OFBN01000486
[OFBN] metagenome; hydrothermal vent
500
425
-
Leu
TAA
[ENA]
¢þ
>WENV181212236
OFBN01000539
[OFBN] metagenome; hydrothermal vent
520
593
+
Arg
CCT
[ENA]
¢þ
>WENV181212246
OFBN01001083
[OFBN] metagenome; hydrothermal vent
563
490
-
Glu
CTC
[ENA]
¢þ
>WENV181212232
OFBN01000469
[OFBN] metagenome; hydrothermal vent
615
541
-
Pro
GGG
[ENA]
¢þ
>WENV181212261
OFBN01002344
[OFBN] metagenome; hydrothermal vent
646
572
-
Pro
TGG
[ENA]
¢þ
>WENV181212218
OFBN01000206
[OFBN] metagenome; hydrothermal vent
666
578
-
Ser
GCT
[ENA]
¢þ
>WENV181212245
OFBN01001083
[OFBN] metagenome; hydrothermal vent
670
598
-
Gln
CTG
[ENA]
¢þ
>WENV181212256
OFBN01001528
[OFBN] metagenome; hydrothermal vent
691
619
-
Val
CAC
[ENA]
¢þ
>WENV181212255
OFBN01001520
[OFBN] metagenome; hydrothermal vent
724
799
+
Glu
CTC
[ENA]
¢þ
>WENV181212254
OFBN01001511
[OFBN] metagenome; hydrothermal vent
798
880
+
Leu
TAG
[ENA]
¢þ
>WENV181212247
OFBN01001170
[OFBN] metagenome; hydrothermal vent
807
733
-
Leu
CAA
[ENA]
¢þ
>WENV181212244
OFBN01000830
[OFBN] metagenome; hydrothermal vent
847
760
-
Ser
TGA
[ENA]
¢þ
>WENV181212225
OFBN01000248
[OFBN] metagenome; hydrothermal vent
916
828
-
Ser
GGA
[ENA]
¢þ
>WENV181212251
OFBN01001269
[OFBN] metagenome; hydrothermal vent
959
1035
+
Ile
GAT
[ENA]
¢þ
>WENV181212231
OFBN01000450
[OFBN] metagenome; hydrothermal vent
1067
995
-
Gly
TCC
[ENA]
¢þ
>WENV181212214
OFBN01000161
[OFBN] metagenome; hydrothermal vent
1193
1120
-
Trp
CCA
[ENA]
¢þ
>WENV181212230
OFBN01000436
[OFBN] metagenome; hydrothermal vent
1204
1122
-
Leu
TAG
[ENA]
¢þ
>WENV181212242
OFBN01000705
[OFBN] metagenome; hydrothermal vent
1226
1153
-
Ile2
CAT
[ENA]
¢þ
>WENV181212237
OFBN01000545
[OFBN] metagenome; hydrothermal vent
1359
1433
+
Pro
TGG
[ENA]
¢þ
>WENV181212243
OFBN01000793
[OFBN] metagenome; hydrothermal vent
1406
1479
+
Lys
CTT
[ENA]
¢þ
>WENV181212201
OFBN01000054
[OFBN] metagenome; hydrothermal vent
1426
1515
+
Ser
TGA
[ENA]
¢þ
>WENV181212202
OFBN01000054
[OFBN] metagenome; hydrothermal vent
1539
1632
+
Ser
GCT
[ENA]
¢þ
>WENV181212215
OFBN01000170
[OFBN] metagenome; hydrothermal vent
1630
1556
-
Ile2
CAT
[ENA]
¢þ
>WENV181212241
OFBN01000694
[OFBN] metagenome; hydrothermal vent
1818
1744
-
Ile2
CAT
[ENA]
¢þ
>WENV181212240
OFBN01000601
[OFBN] metagenome; hydrothermal vent
1924
1999
+
Arg
CCT
[ENA]
¢þ
>WENV181212239
OFBN01000599
[OFBN] metagenome; hydrothermal vent
1967
2039
+
Gln
CTG
[ENA]
¢þ
>WENV181212220
OFBN01000214
[OFBN] metagenome; hydrothermal vent
2049
2120
+
Glu
TTC
[ENA]
¢þ
>WENV181212191
OFBN01000010
[OFBN] metagenome; hydrothermal vent
2106
2033
-
Ala
GGC
[ENA]
¢þ
>WENV181212235
OFBN01000529
[OFBN] metagenome; hydrothermal vent
2143
2229
+
Leu
GAG
[ENA]
¢þ
>WENV181212224
OFBN01000233
[OFBN] metagenome; hydrothermal vent
2182
2266
+
Ser
TGA
[ENA]
¢þ
>WENV181212223
OFBN01000225
[OFBN] metagenome; hydrothermal vent
2210
2138
-
Cys
GCA
[ENA]
¢þ
>WENV181212229
OFBN01000422
[OFBN] metagenome; hydrothermal vent
2268
2342
+
Arg
TCT
[ENA]
¢þ
>WENV181212222
OFBN01000225
[OFBN] metagenome; hydrothermal vent
2293
2221
-
Arg
CCT
[ENA]
¢þ
>WENV181212217
OFBN01000200
[OFBN] metagenome; hydrothermal vent
2820
2895
+
His
GTG
[ENA]
¢þ
>WENV181212226
OFBN01000276
[OFBN] metagenome; hydrothermal vent
3928
3855
-
Trp
CCA
[ENA]
¢þ
>WENV181212194
OFBN01000018
[OFBN] metagenome; hydrothermal vent
3939
3863
-
Pro
CGG
[ENA]
¢þ
>WENV181212196
OFBN01000039
[OFBN] metagenome; hydrothermal vent
4243
4316
+
Lys
TTT
[ENA]
¢þ
>WENV181212208
OFBN01000089
[OFBN] metagenome; hydrothermal vent
4333
4408
+
Thr
CGT
[ENA]
¢þ
>WENV181212219
OFBN01000212
[OFBN] metagenome; hydrothermal vent
4363
4289
-
Arg
CCG
[ENA]
¢þ
>WENV181212203
OFBN01000054
[OFBN] metagenome; hydrothermal vent
4370
4445
+
fMet
CAT
[ENA]
¢þ
>WENV181212221
OFBN01000215
[OFBN] metagenome; hydrothermal vent
4639
4711
+
Gln
TTG
[ENA]
¢þ
>WENV181212197
OFBN01000039
[OFBN] metagenome; hydrothermal vent
4762
4837
+
Glu
TTC
[ENA]
¢þ
>WENV181212198
OFBN01000039
[OFBN] metagenome; hydrothermal vent
4873
4947
+
Asp
GTC
[ENA]
¢þ
>WENV181212216
OFBN01000192
[OFBN] metagenome; hydrothermal vent
4903
4979
+
fMet
CAT
[ENA]
¢þ
>WENV181212210
OFBN01000121
[OFBN] metagenome; hydrothermal vent
4910
4828
-
Tyr
GTA
[ENA]
¢þ
>WENV181212206
OFBN01000068
[OFBN] metagenome; hydrothermal vent
5046
5119
+
Thr
TGT
[ENA]
¢þ
>WENV181212199
OFBN01000039
[OFBN] metagenome; hydrothermal vent
5405
5479
+
Asp
GTC
[ENA]
¢þ
>WENV181212213
OFBN01000143
[OFBN] metagenome; hydrothermal vent
5483
5396
-
Leu
CAG
[ENA]
¢þ
>WENV181212200
OFBN01000039
[OFBN] metagenome; hydrothermal vent
5498
5571
+
Phe
GAA
[ENA]
¢þ
>WENV181212195
OFBN01000038
[OFBN] metagenome; hydrothermal vent
5652
5726
+
Arg
TCT
[ENA]
¢þ
>WENV181212207
OFBN01000069
[OFBN] metagenome; hydrothermal vent
5774
5847
+
Asn
GTT
[ENA]
¢þ
>WENV181212204
OFBN01000054
[OFBN] metagenome; hydrothermal vent
5905
5834
-
Val
TAC
[ENA]
¢þ
>WENV181212209
OFBN01000121
[OFBN] metagenome; hydrothermal vent
6308
6384
+
Thr
TGT
[ENA]
¢þ
>WENV181212193
OFBN01000014
[OFBN] metagenome; hydrothermal vent
10848
10921
+
Gly
CCC
[ENA]
¢þ
>WENV181212192
OFBN01000013
[OFBN] metagenome; hydrothermal vent
11503
11597
+
SeC
TCA
[ENA]
¢þ
>WENV181212189
OFBN01000005
[OFBN] metagenome; hydrothermal vent
15028
15115
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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