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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OFBO] metagenome; hydrothermal vent
HIT:
74 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181212338
OFBO01002047
[OFBO] metagenome; hydrothermal vent
4
80
+
fMet
CAT
[ENA]
¢þ
>WENV181212317
OFBO01000293
[OFBO] metagenome; hydrothermal vent
12
86
+
Pro
TGG
[ENA]
¢þ
>WENV181212329
OFBO01000804
[OFBO] metagenome; hydrothermal vent
97
21
-
Thr
TGT
[ENA]
¢þ
>WENV181212286
OFBO01000083
[OFBO] metagenome; hydrothermal vent
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV181212290
OFBO01000103
[OFBO] metagenome; hydrothermal vent
145
221
+
Leu
TAA
[ENA]
¢þ
>WENV181212334
OFBO01001318
[OFBO] metagenome; hydrothermal vent
152
70
-
Leu
TAG
[ENA]
¢þ
>WENV181212328
OFBO01000645
[OFBO] metagenome; hydrothermal vent
179
106
-
Lys
CTT
[ENA]
¢þ
>WENV181212321
OFBO01000389
[OFBO] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212339
OFBO01002147
[OFBO] metagenome; hydrothermal vent
231
144
-
Ser
CGA
[ENA]
¢þ
>WENV181212342
OFBO01003129
[OFBO] metagenome; hydrothermal vent
254
180
-
Arg
CCG
[ENA]
¢þ
>WENV181212301
OFBO01000134
[OFBO] metagenome; hydrothermal vent
377
303
-
Arg
CCG
[ENA]
¢þ
>WENV181212318
OFBO01000313
[OFBO] metagenome; hydrothermal vent
390
464
+
Leu
CAA
[ENA]
¢þ
>WENV181212340
OFBO01002182
[OFBO] metagenome; hydrothermal vent
401
328
-
Gly
CCC
[ENA]
¢þ
>WENV181212324
OFBO01000400
[OFBO] metagenome; hydrothermal vent
431
359
-
Gly
TCC
[ENA]
¢þ
>WENV181212336
OFBO01001694
[OFBO] metagenome; hydrothermal vent
488
416
-
Val
CAC
[ENA]
¢þ
>WENV181212326
OFBO01000491
[OFBO] metagenome; hydrothermal vent
520
593
+
Arg
CCT
[ENA]
¢þ
>WENV181212341
OFBO01002385
[OFBO] metagenome; hydrothermal vent
532
458
-
Pro
GGG
[ENA]
¢þ
>WENV181212330
OFBO01000949
[OFBO] metagenome; hydrothermal vent
570
642
+
Gln
CTG
[ENA]
¢þ
>WENV181212337
OFBO01001739
[OFBO] metagenome; hydrothermal vent
629
715
+
Leu
GAG
[ENA]
¢þ
>WENV181212323
OFBO01000395
[OFBO] metagenome; hydrothermal vent
660
586
-
Ile2
CAT
[ENA]
¢þ
>WENV181212306
OFBO01000220
[OFBO] metagenome; hydrothermal vent
666
578
-
Ser
GCT
[ENA]
¢þ
>WENV181212331
OFBO01000949
[OFBO] metagenome; hydrothermal vent
677
750
+
Glu
CTC
[ENA]
¢þ
>WENV181212333
OFBO01001188
[OFBO] metagenome; hydrothermal vent
716
641
-
His
GTG
[ENA]
¢þ
>WENV181212332
OFBO01001048
[OFBO] metagenome; hydrothermal vent
731
819
+
Ser
GGA
[ENA]
¢þ
>WENV181212335
OFBO01001319
[OFBO] metagenome; hydrothermal vent
739
823
+
Ala
AGC
[ENA]
¢þ
>WENV181212322
OFBO01000395
[OFBO] metagenome; hydrothermal vent
788
863
+
Asn
GTT
[ENA]
¢þ
>WENV181212312
OFBO01000272
[OFBO] metagenome; hydrothermal vent
823
897
+
Arg
TCT
[ENA]
¢þ
>WENV181212305
OFBO01000183
[OFBO] metagenome; hydrothermal vent
1193
1120
-
Trp
CCA
[ENA]
¢þ
>WENV181212327
OFBO01000512
[OFBO] metagenome; hydrothermal vent
1379
1292
-
Ser
TGA
[ENA]
¢þ
>WENV181212307
OFBO01000232
[OFBO] metagenome; hydrothermal vent
1445
1357
-
Ser
GGA
[ENA]
¢þ
>WENV181212320
OFBO01000335
[OFBO] metagenome; hydrothermal vent
1704
1778
+
Ile2
CAT
[ENA]
¢þ
>WENV181212316
OFBO01000285
[OFBO] metagenome; hydrothermal vent
1777
1683
-
SeC
TCA
[ENA]
¢þ
>WENV181212308
OFBO01000248
[OFBO] metagenome; hydrothermal vent
1836
1907
+
Glu
TTC
[ENA]
¢þ
>WENV181212273
OFBO01000038
[OFBO] metagenome; hydrothermal vent
2232
2148
-
Ser
TGA
[ENA]
¢þ
>WENV181212311
OFBO01000270
[OFBO] metagenome; hydrothermal vent
2467
2539
+
Gln
TTG
[ENA]
¢þ
>WENV181212325
OFBO01000438
[OFBO] metagenome; hydrothermal vent
2491
2409
-
Tyr
GTA
[ENA]
¢þ
>WENV181212315
OFBO01000284
[OFBO] metagenome; hydrothermal vent
2721
2647
-
Gly
TCC
[ENA]
¢þ
>WENV181212274
OFBO01000042
[OFBO] metagenome; hydrothermal vent
3095
3166
+
Val
TAC
[ENA]
¢þ
>WENV181212304
OFBO01000173
[OFBO] metagenome; hydrothermal vent
3222
3295
+
Arg
ACG
[ENA]
¢þ
>WENV181212319
OFBO01000330
[OFBO] metagenome; hydrothermal vent
3356
3274
-
Tyr
GTA
[ENA]
¢þ
>WENV181212309
OFBO01000261
[OFBO] metagenome; hydrothermal vent
3617
3690
+
Val
TAC
[ENA]
¢þ
>WENV181212288
OFBO01000084
[OFBO] metagenome; hydrothermal vent
3703
3631
-
Cys
GCA
[ENA]
¢þ
>WENV181212287
OFBO01000084
[OFBO] metagenome; hydrothermal vent
3786
3714
-
Arg
CCT
[ENA]
¢þ
>WENV181212314
OFBO01000284
[OFBO] metagenome; hydrothermal vent
3802
3876
+
Pro
TGG
[ENA]
¢þ
>WENV181212313
OFBO01000280
[OFBO] metagenome; hydrothermal vent
3871
3797
-
Ile2
CAT
[ENA]
¢þ
>WENV181212310
OFBO01000269
[OFBO] metagenome; hydrothermal vent
3939
3864
-
Thr
CGT
[ENA]
¢þ
>WENV181212292
OFBO01000113
[OFBO] metagenome; hydrothermal vent
4237
4310
+
Lys
TTT
[ENA]
¢þ
>WENV181212280
OFBO01000055
[OFBO] metagenome; hydrothermal vent
4333
4408
+
Thr
CGT
[ENA]
¢þ
>WENV181212285
OFBO01000064
[OFBO] metagenome; hydrothermal vent
4568
4494
-
Arg
TCT
[ENA]
¢þ
>WENV181212277
OFBO01000042
[OFBO] metagenome; hydrothermal vent
4630
4555
-
fMet
CAT
[ENA]
¢þ
>WENV181212293
OFBO01000113
[OFBO] metagenome; hydrothermal vent
4756
4831
+
Glu
TTC
[ENA]
¢þ
>WENV181212300
OFBO01000132
[OFBO] metagenome; hydrothermal vent
4784
4857
+
Asn
GTT
[ENA]
¢þ
>WENV181212294
OFBO01000113
[OFBO] metagenome; hydrothermal vent
4867
4941
+
Asp
GTC
[ENA]
¢þ
>WENV181212284
OFBO01000061
[OFBO] metagenome; hydrothermal vent
5185
5112
-
Trp
CCA
[ENA]
¢þ
>WENV181212283
OFBO01000061
[OFBO] metagenome; hydrothermal vent
5397
5324
-
Met
CAT
[ENA]
¢þ
>WENV181212295
OFBO01000113
[OFBO] metagenome; hydrothermal vent
5399
5473
+
Asp
GTC
[ENA]
¢þ
>WENV181212296
OFBO01000113
[OFBO] metagenome; hydrothermal vent
5494
5567
+
Phe
GAA
[ENA]
¢þ
>WENV181212282
OFBO01000061
[OFBO] metagenome; hydrothermal vent
5511
5436
-
Thr
GGT
[ENA]
¢þ
>WENV181212302
OFBO01000164
[OFBO] metagenome; hydrothermal vent
5697
5772
+
Leu
TAA
[ENA]
¢þ
>WENV181212281
OFBO01000058
[OFBO] metagenome; hydrothermal vent
5734
5819
+
Gln
CTG
[ENA]
¢þ
>WENV181212291
OFBO01000109
[OFBO] metagenome; hydrothermal vent
5747
5672
-
Lys
CTT
[ENA]
¢þ
>WENV181212303
OFBO01000164
[OFBO] metagenome; hydrothermal vent
5773
5844
+
His
GTG
[ENA]
¢þ
>WENV181212299
OFBO01000131
[OFBO] metagenome; hydrothermal vent
6155
6228
+
Thr
TGT
[ENA]
¢þ
>WENV181212289
OFBO01000102
[OFBO] metagenome; hydrothermal vent
6301
6228
-
Ile2
CAT
[ENA]
¢þ
>WENV181212297
OFBO01000129
[OFBO] metagenome; hydrothermal vent
6310
6382
+
Gln
CTG
[ENA]
¢þ
>WENV181212271
OFBO01000012
[OFBO] metagenome; hydrothermal vent
6390
6308
-
Leu
TAG
[ENA]
¢þ
>WENV181212298
OFBO01000129
[OFBO] metagenome; hydrothermal vent
6421
6494
+
Glu
CTC
[ENA]
¢þ
>WENV181212276
OFBO01000042
[OFBO] metagenome; hydrothermal vent
7461
7368
-
Ser
GCT
[ENA]
¢þ
>WENV181212275
OFBO01000042
[OFBO] metagenome; hydrothermal vent
7574
7485
-
Ser
TGA
[ENA]
¢þ
>WENV181212269
OFBO01000005
[OFBO] metagenome; hydrothermal vent
7589
7663
+
Pro
GGG
[ENA]
¢þ
>WENV181212279
OFBO01000046
[OFBO] metagenome; hydrothermal vent
8788
8864
+
Pro
CGG
[ENA]
¢þ
>WENV181212278
OFBO01000045
[OFBO] metagenome; hydrothermal vent
10167
10240
+
Ala
GGC
[ENA]
¢þ
>WENV181212272
OFBO01000013
[OFBO] metagenome; hydrothermal vent
14867
14954
+
Leu
CAG
[ENA]
¢þ
>WENV181212270
OFBO01000008
[OFBO] metagenome; hydrothermal vent
17055
17128
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK