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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OFBQ] metagenome; hydrothermal vent
HIT:
79 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181212469
OFBQ01000424
[OFBQ] metagenome; hydrothermal vent
43
117
+
Gly
TCC
[ENA]
¢þ
>WENV181212485
OFBQ01000992
[OFBQ] metagenome; hydrothermal vent
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV181212492
OFBQ01001560
[OFBQ] metagenome; hydrothermal vent
118
36
-
Leu
TAG
[ENA]
¢þ
>WENV181212499
OFBQ01002790
[OFBQ] metagenome; hydrothermal vent
136
60
-
Asp
GTC
[ENA]
¢þ
>WENV181212457
OFBQ01000176
[OFBQ] metagenome; hydrothermal vent
143
57
-
Leu
GAG
[ENA]
¢þ
>WENV181212459
OFBQ01000189
[OFBQ] metagenome; hydrothermal vent
148
221
+
Thr
TGT
[ENA]
¢þ
>WENV181212502
OFBQ01003500
[OFBQ] metagenome; hydrothermal vent
151
224
+
Ala
CGC
[ENA]
¢þ
>WENV181212470
OFBQ01000452
[OFBQ] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212490
OFBQ01001473
[OFBQ] metagenome; hydrothermal vent
211
127
-
Ala
AGC
[ENA]
¢þ
>WENV181212501
OFBQ01003328
[OFBQ] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>WENV181212483
OFBQ01000901
[OFBQ] metagenome; hydrothermal vent
288
206
-
Tyr
GTA
[ENA]
¢þ
>WENV181212478
OFBQ01000649
[OFBQ] metagenome; hydrothermal vent
299
371
+
Val
CAC
[ENA]
¢þ
>WENV181212446
OFBQ01000128
[OFBQ] metagenome; hydrothermal vent
311
386
+
His
GTG
[ENA]
¢þ
>WENV181212495
OFBQ01001962
[OFBQ] metagenome; hydrothermal vent
344
270
-
Leu
CAA
[ENA]
¢þ
>WENV181212486
OFBQ01001002
[OFBQ] metagenome; hydrothermal vent
353
441
+
Ser
GGA
[ENA]
¢þ
>WENV181212479
OFBQ01000756
[OFBQ] metagenome; hydrothermal vent
373
301
-
Gln
TTG
[ENA]
¢þ
>WENV181212500
OFBQ01002866
[OFBQ] metagenome; hydrothermal vent
386
311
-
Thr
CGT
[ENA]
¢þ
>WENV181212488
OFBQ01001274
[OFBQ] metagenome; hydrothermal vent
401
473
+
Gln
CTG
[ENA]
¢þ
>WENV181212456
OFBQ01000166
[OFBQ] metagenome; hydrothermal vent
424
351
-
Phe
GAA
[ENA]
¢þ
>WENV181212493
OFBQ01001573
[OFBQ] metagenome; hydrothermal vent
455
527
+
Gly
TCC
[ENA]
¢þ
>WENV181212498
OFBQ01002790
[OFBQ] metagenome; hydrothermal vent
460
386
-
Glu
TTC
[ENA]
¢þ
>WENV181212476
OFBQ01000535
[OFBQ] metagenome; hydrothermal vent
482
555
+
Arg
CCT
[ENA]
¢þ
>WENV181212496
OFBQ01002271
[OFBQ] metagenome; hydrothermal vent
488
414
-
Lys
TTT
[ENA]
¢þ
>WENV181212497
OFBQ01002438
[OFBQ] metagenome; hydrothermal vent
503
579
+
Ile
GAT
[ENA]
¢þ
>WENV181212489
OFBQ01001274
[OFBQ] metagenome; hydrothermal vent
508
581
+
Glu
CTC
[ENA]
¢þ
>WENV181212455
OFBQ01000166
[OFBQ] metagenome; hydrothermal vent
517
443
-
Asp
GTC
[ENA]
¢þ
>WENV181212466
OFBQ01000281
[OFBQ] metagenome; hydrothermal vent
588
661
+
Ile2
CAT
[ENA]
¢þ
>WENV181212427
OFBQ01000021
[OFBQ] metagenome; hydrothermal vent
666
578
-
Ser
GCT
[ENA]
¢þ
>WENV181212484
OFBQ01000925
[OFBQ] metagenome; hydrothermal vent
672
746
+
Pro
GGG
[ENA]
¢þ
>WENV181212491
OFBQ01001509
[OFBQ] metagenome; hydrothermal vent
708
795
+
Ser
CGA
[ENA]
¢þ
>WENV181212494
OFBQ01001606
[OFBQ] metagenome; hydrothermal vent
822
896
+
Arg
TCT
[ENA]
¢þ
>WENV181212481
OFBQ01000767
[OFBQ] metagenome; hydrothermal vent
832
757
-
Asn
GTT
[ENA]
¢þ
>WENV181212482
OFBQ01000812
[OFBQ] metagenome; hydrothermal vent
847
760
-
Ser
TGA
[ENA]
¢þ
>WENV181212480
OFBQ01000767
[OFBQ] metagenome; hydrothermal vent
960
1034
+
Ile2
CAT
[ENA]
¢þ
>WENV181212454
OFBQ01000166
[OFBQ] metagenome; hydrothermal vent
1049
975
-
Asp
GTC
[ENA]
¢þ
>WENV181212453
OFBQ01000166
[OFBQ] metagenome; hydrothermal vent
1160
1085
-
Glu
TTC
[ENA]
¢þ
>WENV181212473
OFBQ01000532
[OFBQ] metagenome; hydrothermal vent
1168
1240
+
Gln
CTG
[ENA]
¢þ
>WENV181212487
OFBQ01001035
[OFBQ] metagenome; hydrothermal vent
1170
1261
+
SeC
TCA
[ENA]
¢þ
>WENV181212451
OFBQ01000156
[OFBQ] metagenome; hydrothermal vent
1245
1174
-
His
GTG
[ENA]
¢þ
>WENV181212474
OFBQ01000532
[OFBQ] metagenome; hydrothermal vent
1279
1352
+
Glu
CTC
[ENA]
¢þ
>WENV181212450
OFBQ01000156
[OFBQ] metagenome; hydrothermal vent
1321
1246
-
Leu
TAA
[ENA]
¢þ
>WENV181212436
OFBQ01000044
[OFBQ] metagenome; hydrothermal vent
1367
1294
-
Asn
GTT
[ENA]
¢þ
>WENV181212460
OFBQ01000195
[OFBQ] metagenome; hydrothermal vent
1404
1330
-
Ile2
CAT
[ENA]
¢þ
>WENV181212461
OFBQ01000232
[OFBQ] metagenome; hydrothermal vent
1415
1327
-
Ser
GGA
[ENA]
¢þ
>WENV181212471
OFBQ01000461
[OFBQ] metagenome; hydrothermal vent
1458
1384
-
Pro
TGG
[ENA]
¢þ
>WENV181212477
OFBQ01000585
[OFBQ] metagenome; hydrothermal vent
1556
1471
-
Gln
CTG
[ENA]
¢þ
>WENV181212452
OFBQ01000166
[OFBQ] metagenome; hydrothermal vent
1679
1606
-
Lys
TTT
[ENA]
¢þ
>WENV181212467
OFBQ01000294
[OFBQ] metagenome; hydrothermal vent
1777
1683
-
SeC
TCA
[ENA]
¢þ
>WENV181212475
OFBQ01000532
[OFBQ] metagenome; hydrothermal vent
2021
2096
+
Glu
CTC
[ENA]
¢þ
>WENV181212435
OFBQ01000043
[OFBQ] metagenome; hydrothermal vent
2049
2120
+
Glu
TTC
[ENA]
¢þ
>WENV181212464
OFBQ01000252
[OFBQ] metagenome; hydrothermal vent
2094
2021
-
Arg
ACG
[ENA]
¢þ
>WENV181212472
OFBQ01000499
[OFBQ] metagenome; hydrothermal vent
2158
2234
+
fMet
CAT
[ENA]
¢þ
>WENV181212443
OFBQ01000107
[OFBQ] metagenome; hydrothermal vent
2230
2304
+
Leu
CAA
[ENA]
¢þ
>WENV181212468
OFBQ01000318
[OFBQ] metagenome; hydrothermal vent
2239
2157
-
Leu
TAG
[ENA]
¢þ
>WENV181212463
OFBQ01000234
[OFBQ] metagenome; hydrothermal vent
2360
2284
-
Thr
TGT
[ENA]
¢þ
>WENV181212441
OFBQ01000080
[OFBQ] metagenome; hydrothermal vent
2383
2310
-
Asn
GTT
[ENA]
¢þ
>WENV181212447
OFBQ01000128
[OFBQ] metagenome; hydrothermal vent
2849
2924
+
Lys
CTT
[ENA]
¢þ
>WENV181212448
OFBQ01000129
[OFBQ] metagenome; hydrothermal vent
3578
3504
-
Ile2
CAT
[ENA]
¢þ
>WENV181212465
OFBQ01000266
[OFBQ] metagenome; hydrothermal vent
3617
3690
+
Val
TAC
[ENA]
¢þ
>WENV181212462
OFBQ01000234
[OFBQ] metagenome; hydrothermal vent
3758
3840
+
Tyr
GTA
[ENA]
¢þ
>WENV181212433
OFBQ01000027
[OFBQ] metagenome; hydrothermal vent
3781
3707
-
Pro
TGG
[ENA]
¢þ
>WENV181212445
OFBQ01000118
[OFBQ] metagenome; hydrothermal vent
3843
3918
+
Thr
CGT
[ENA]
¢þ
>WENV181212428
OFBQ01000025
[OFBQ] metagenome; hydrothermal vent
4217
4299
+
Tyr
GTA
[ENA]
¢þ
>WENV181212458
OFBQ01000184
[OFBQ] metagenome; hydrothermal vent
5073
4999
-
Arg
CCG
[ENA]
¢þ
>WENV181212444
OFBQ01000112
[OFBQ] metagenome; hydrothermal vent
5167
5093
-
Arg
TCT
[ENA]
¢þ
>WENV181212449
OFBQ01000146
[OFBQ] metagenome; hydrothermal vent
5209
5282
+
Trp
CCA
[ENA]
¢þ
>WENV181212439
OFBQ01000054
[OFBQ] metagenome; hydrothermal vent
5652
5726
+
Arg
TCT
[ENA]
¢þ
>WENV181212440
OFBQ01000055
[OFBQ] metagenome; hydrothermal vent
6090
6166
+
Pro
CGG
[ENA]
¢þ
>WENV181212429
OFBQ01000027
[OFBQ] metagenome; hydrothermal vent
6876
6947
+
Val
TAC
[ENA]
¢þ
>WENV181212426
OFBQ01000021
[OFBQ] metagenome; hydrothermal vent
7177
7093
-
Ser
TGA
[ENA]
¢þ
>WENV181212425
OFBQ01000019
[OFBQ] metagenome; hydrothermal vent
7589
7663
+
Pro
GGG
[ENA]
¢þ
>WENV181212434
OFBQ01000042
[OFBQ] metagenome; hydrothermal vent
7745
7818
+
Ala
GGC
[ENA]
¢þ
>WENV181212442
OFBQ01000086
[OFBQ] metagenome; hydrothermal vent
7918
7831
-
Leu
CAG
[ENA]
¢þ
>WENV181212432
OFBQ01000027
[OFBQ] metagenome; hydrothermal vent
8411
8336
-
fMet
CAT
[ENA]
¢þ
>WENV181212437
OFBQ01000045
[OFBQ] metagenome; hydrothermal vent
8563
8635
+
Arg
CCT
[ENA]
¢þ
>WENV181212438
OFBQ01000045
[OFBQ] metagenome; hydrothermal vent
8646
8718
+
Cys
GCA
[ENA]
¢þ
>WENV181212431
OFBQ01000027
[OFBQ] metagenome; hydrothermal vent
11242
11149
-
Ser
GCT
[ENA]
¢þ
>WENV181212430
OFBQ01000027
[OFBQ] metagenome; hydrothermal vent
11355
11266
-
Ser
TGA
[ENA]
¢þ
>WENV181212424
OFBQ01000004
[OFBQ] metagenome; hydrothermal vent
12002
12075
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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