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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFBR] metagenome; hydrothermal vent
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181212526
OFBR01000109
[OFBR] metagenome; hydrothermal vent
2
75
+
Trp
CCA
[ENA]
¢þ
>WENV181212570
OFBR01001663
[OFBR] metagenome; hydrothermal vent
121
195
+
Pro
GGG
[ENA]
¢þ
>WENV181212562
OFBR01000962
[OFBR] metagenome; hydrothermal vent
122
47
-
Arg
CCT
[ENA]
¢þ
>WENV181212579
OFBR01003128
[OFBR] metagenome; hydrothermal vent
139
65
-
Leu
CAA
[ENA]
¢þ
>WENV181212572
OFBR01001850
[OFBR] metagenome; hydrothermal vent
143
57
-
Leu
GAG
[ENA]
¢þ
>WENV181212555
OFBR01000756
[OFBR] metagenome; hydrothermal vent
162
89
-
Lys
CTT
[ENA]
¢þ
>WENV181212547
OFBR01000301
[OFBR] metagenome; hydrothermal vent
186
113
-
Val
TAC
[ENA]
¢þ
>WENV181212576
OFBR01002254
[OFBR] metagenome; hydrothermal vent
192
265
+
Gly
CCC
[ENA]
¢þ
>WENV181212550
OFBR01000402
[OFBR] metagenome; hydrothermal vent
208
132
-
fMet
CAT
[ENA]
¢þ
>WENV181212583
OFBR01003261
[OFBR] metagenome; hydrothermal vent
226
299
+
Thr
GGT
[ENA]
¢þ
>WENV181212563
OFBR01001010
[OFBR] metagenome; hydrothermal vent
246
172
-
Pro
CGG
[ENA]
¢þ
>WENV181212581
OFBR01003183
[OFBR] metagenome; hydrothermal vent
259
346
+
Ser
TGA
[ENA]
¢þ
>WENV181212580
OFBR01003160
[OFBR] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>WENV181212561
OFBR01000925
[OFBR] metagenome; hydrothermal vent
288
206
-
Tyr
GTA
[ENA]
¢þ
>WENV181212559
OFBR01000783
[OFBR] metagenome; hydrothermal vent
293
217
-
Pro
TGG
[ENA]
¢þ
>WENV181212582
OFBR01003240
[OFBR] metagenome; hydrothermal vent
306
390
+
Ala
AGC
[ENA]
¢þ
>WENV181212584
OFBR01003261
[OFBR] metagenome; hydrothermal vent
325
397
+
Met
CAT
[ENA]
¢þ
>WENV181212573
OFBR01001900
[OFBR] metagenome; hydrothermal vent
353
441
+
Ser
GGA
[ENA]
¢þ
>WENV181212571
OFBR01001667
[OFBR] metagenome; hydrothermal vent
386
311
-
Thr
CGT
[ENA]
¢þ
>WENV181212531
OFBR01000154
[OFBR] metagenome; hydrothermal vent
407
336
-
His
GTG
[ENA]
¢þ
>WENV181212574
OFBR01001983
[OFBR] metagenome; hydrothermal vent
423
348
-
His
GTG
[ENA]
¢þ
>WENV181212578
OFBR01002855
[OFBR] metagenome; hydrothermal vent
423
350
-
Ala
CGC
[ENA]
¢þ
>WENV181212551
OFBR01000422
[OFBR] metagenome; hydrothermal vent
431
359
-
Gly
TCC
[ENA]
¢þ
>WENV181212575
OFBR01002039
[OFBR] metagenome; hydrothermal vent
474
402
-
Val
CAC
[ENA]
¢þ
>WENV181212530
OFBR01000154
[OFBR] metagenome; hydrothermal vent
483
408
-
Leu
TAA
[ENA]
¢þ
>WENV181212577
OFBR01002748
[OFBR] metagenome; hydrothermal vent
492
416
-
Pro
CGG
[ENA]
¢þ
>WENV181212569
OFBR01001571
[OFBR] metagenome; hydrothermal vent
520
593
+
Arg
CCT
[ENA]
¢þ
>WENV181212566
OFBR01001253
[OFBR] metagenome; hydrothermal vent
574
501
-
Glu
CTC
[ENA]
¢þ
>WENV181212554
OFBR01000685
[OFBR] metagenome; hydrothermal vent
588
661
+
Ile2
CAT
[ENA]
¢þ
>WENV181212518
OFBR01000043
[OFBR] metagenome; hydrothermal vent
614
696
+
Tyr
GTA
[ENA]
¢þ
>WENV181212548
OFBR01000302
[OFBR] metagenome; hydrothermal vent
648
721
+
Thr
TGT
[ENA]
¢þ
>WENV181212565
OFBR01001253
[OFBR] metagenome; hydrothermal vent
681
609
-
Gln
CTG
[ENA]
¢þ
>WENV181212568
OFBR01001467
[OFBR] metagenome; hydrothermal vent
724
799
+
Glu
CTC
[ENA]
¢þ
>WENV181212560
OFBR01000865
[OFBR] metagenome; hydrothermal vent
752
839
+
Ser
TGA
[ENA]
¢þ
>WENV181212567
OFBR01001446
[OFBR] metagenome; hydrothermal vent
798
880
+
Leu
TAG
[ENA]
¢þ
>WENV181212557
OFBR01000778
[OFBR] metagenome; hydrothermal vent
875
800
-
Asn
GTT
[ENA]
¢þ
>WENV181212564
OFBR01001232
[OFBR] metagenome; hydrothermal vent
959
1035
+
Ile
GAT
[ENA]
¢þ
>WENV181212546
OFBR01000296
[OFBR] metagenome; hydrothermal vent
987
914
-
Ala
TGC
[ENA]
¢þ
>WENV181212556
OFBR01000778
[OFBR] metagenome; hydrothermal vent
1003
1077
+
Ile2
CAT
[ENA]
¢þ
>WENV181212558
OFBR01000783
[OFBR] metagenome; hydrothermal vent
1374
1448
+
Gly
TCC
[ENA]
¢þ
>WENV181212536
OFBR01000180
[OFBR] metagenome; hydrothermal vent
1691
1779
+
Ser
GCT
[ENA]
¢þ
>WENV181212537
OFBR01000254
[OFBR] metagenome; hydrothermal vent
1759
1671
-
Ser
CGA
[ENA]
¢þ
>WENV181212553
OFBR01000653
[OFBR] metagenome; hydrothermal vent
1817
1744
-
Ile2
CAT
[ENA]
¢þ
>WENV181212552
OFBR01000585
[OFBR] metagenome; hydrothermal vent
1973
2049
+
Leu
TAA
[ENA]
¢þ
>WENV181212533
OFBR01000172
[OFBR] metagenome; hydrothermal vent
2110
2204
+
SeC
TCA
[ENA]
¢þ
>WENV181212544
OFBR01000278
[OFBR] metagenome; hydrothermal vent
2702
2629
-
Phe
GAA
[ENA]
¢þ
>WENV181212543
OFBR01000278
[OFBR] metagenome; hydrothermal vent
2795
2721
-
Asp
GTC
[ENA]
¢þ
>WENV181212549
OFBR01000317
[OFBR] metagenome; hydrothermal vent
3161
3076
-
Gln
CTG
[ENA]
¢þ
>WENV181212539
OFBR01000277
[OFBR] metagenome; hydrothermal vent
3237
3163
-
Arg
TCT
[ENA]
¢þ
>WENV181212542
OFBR01000278
[OFBR] metagenome; hydrothermal vent
3327
3253
-
Asp
GTC
[ENA]
¢þ
>WENV181212521
OFBR01000049
[OFBR] metagenome; hydrothermal vent
3340
3267
-
Ala
GGC
[ENA]
¢þ
>WENV181212538
OFBR01000269
[OFBR] metagenome; hydrothermal vent
3349
3437
+
Ser
GGA
[ENA]
¢þ
>WENV181212541
OFBR01000278
[OFBR] metagenome; hydrothermal vent
3438
3363
-
Glu
TTC
[ENA]
¢þ
>WENV181212517
OFBR01000034
[OFBR] metagenome; hydrothermal vent
3670
3597
-
Gly
CCC
[ENA]
¢þ
>WENV181212513
OFBR01000025
[OFBR] metagenome; hydrothermal vent
3703
3631
-
Cys
GCA
[ENA]
¢þ
>WENV181212508
OFBR01000007
[OFBR] metagenome; hydrothermal vent
3781
3707
-
Pro
TGG
[ENA]
¢þ
>WENV181212512
OFBR01000025
[OFBR] metagenome; hydrothermal vent
3786
3714
-
Arg
CCT
[ENA]
¢þ
>WENV181212516
OFBR01000033
[OFBR] metagenome; hydrothermal vent
3792
3864
+
Gln
TTG
[ENA]
¢þ
>WENV181212545
OFBR01000285
[OFBR] metagenome; hydrothermal vent
3912
3984
+
Gln
CTG
[ENA]
¢þ
>WENV181212511
OFBR01000020
[OFBR] metagenome; hydrothermal vent
3939
3863
-
Pro
CGG
[ENA]
¢þ
>WENV181212540
OFBR01000278
[OFBR] metagenome; hydrothermal vent
3957
3884
-
Lys
TTT
[ENA]
¢þ
>WENV181212535
OFBR01000179
[OFBR] metagenome; hydrothermal vent
3960
4034
+
Ile2
CAT
[ENA]
¢þ
>WENV181212525
OFBR01000094
[OFBR] metagenome; hydrothermal vent
4333
4408
+
Thr
CGT
[ENA]
¢þ
>WENV181212534
OFBR01000177
[OFBR] metagenome; hydrothermal vent
4438
4511
+
Trp
CCA
[ENA]
¢þ
>WENV181212529
OFBR01000138
[OFBR] metagenome; hydrothermal vent
4929
4847
-
Tyr
GTA
[ENA]
¢þ
>WENV181212532
OFBR01000157
[OFBR] metagenome; hydrothermal vent
5483
5396
-
Leu
CAG
[ENA]
¢þ
>WENV181212515
OFBR01000028
[OFBR] metagenome; hydrothermal vent
5685
5610
-
Lys
CTT
[ENA]
¢þ
>WENV181212523
OFBR01000081
[OFBR] metagenome; hydrothermal vent
5774
5847
+
Asn
GTT
[ENA]
¢þ
>WENV181212528
OFBR01000138
[OFBR] metagenome; hydrothermal vent
6327
6403
+
Thr
TGT
[ENA]
¢þ
>WENV181212510
OFBR01000019
[OFBR] metagenome; hydrothermal vent
6516
6590
+
Arg
TCT
[ENA]
¢þ
>WENV181212524
OFBR01000091
[OFBR] metagenome; hydrothermal vent
6781
6855
+
Arg
CCG
[ENA]
¢þ
>WENV181212504
OFBR01000007
[OFBR] metagenome; hydrothermal vent
6875
6946
+
Val
TAC
[ENA]
¢þ
>WENV181212522
OFBR01000066
[OFBR] metagenome; hydrothermal vent
6970
6899
-
Glu
TTC
[ENA]
¢þ
>WENV181212527
OFBR01000111
[OFBR] metagenome; hydrothermal vent
7147
7065
-
Leu
TAG
[ENA]
¢þ
>WENV181212503
OFBR01000005
[OFBR] metagenome; hydrothermal vent
7589
7663
+
Pro
GGG
[ENA]
¢þ
>WENV181212514
OFBR01000028
[OFBR] metagenome; hydrothermal vent
8223
8148
-
His
GTG
[ENA]
¢þ
>WENV181212507
OFBR01000007
[OFBR] metagenome; hydrothermal vent
8410
8335
-
fMet
CAT
[ENA]
¢þ
>WENV181212519
OFBR01000043
[OFBR] metagenome; hydrothermal vent
9682
9757
+
Thr
GGT
[ENA]
¢þ
>WENV181212520
OFBR01000043
[OFBR] metagenome; hydrothermal vent
9796
9869
+
Met
CAT
[ENA]
¢þ
>WENV181212506
OFBR01000007
[OFBR] metagenome; hydrothermal vent
11241
11148
-
Ser
GCT
[ENA]
¢þ
>WENV181212505
OFBR01000007
[OFBR] metagenome; hydrothermal vent
11354
11265
-
Ser
TGA
[ENA]
¢þ
>WENV181212509
OFBR01000014
[OFBR] metagenome; hydrothermal vent
11716
11800
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK