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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OFBT] metagenome; hydrothermal vent
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181212705
OFBT01000299
[OFBT] metagenome; hydrothermal vent
12
86
+
Pro
TGG
[ENA]
¢þ
>WENV181212732
OFBT01001918
[OFBT] metagenome; hydrothermal vent
127
53
-
fMet
CAT
[ENA]
¢þ
>WENV181212684
OFBT01000145
[OFBT] metagenome; hydrothermal vent
130
55
-
Arg
CCT
[ENA]
¢þ
>WENV181212709
OFBT01000510
[OFBT] metagenome; hydrothermal vent
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV181212713
OFBT01000722
[OFBT] metagenome; hydrothermal vent
179
106
-
Lys
CTT
[ENA]
¢þ
>WENV181212672
OFBT01000074
[OFBT] metagenome; hydrothermal vent
186
113
-
Val
TAC
[ENA]
¢þ
>WENV181212706
OFBT01000414
[OFBT] metagenome; hydrothermal vent
198
110
-
Ser
CGA
[ENA]
¢þ
>WENV181212738
OFBT01003340
[OFBT] metagenome; hydrothermal vent
226
299
+
Thr
GGT
[ENA]
¢þ
>WENV181212688
OFBT01000153
[OFBT] metagenome; hydrothermal vent
245
316
+
Val
TAC
[ENA]
¢þ
>WENV181212735
OFBT01002211
[OFBT] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>WENV181212717
OFBT01000904
[OFBT] metagenome; hydrothermal vent
278
204
-
Gly
TCC
[ENA]
¢þ
>WENV181212711
OFBT01000602
[OFBT] metagenome; hydrothermal vent
288
206
-
Tyr
GTA
[ENA]
¢þ
>WENV181212737
OFBT01002814
[OFBT] metagenome; hydrothermal vent
295
380
+
Leu
CAG
[ENA]
¢þ
>WENV181212734
OFBT01001998
[OFBT] metagenome; hydrothermal vent
311
386
+
His
GTG
[ENA]
¢þ
>WENV181212700
OFBT01000241
[OFBT] metagenome; hydrothermal vent
316
234
-
Tyr
GTA
[ENA]
¢þ
>WENV181212739
OFBT01003340
[OFBT] metagenome; hydrothermal vent
325
397
+
Met
CAT
[ENA]
¢þ
>WENV181212683
OFBT01000116
[OFBT] metagenome; hydrothermal vent
377
303
-
Arg
CCG
[ENA]
¢þ
>WENV181212733
OFBT01001927
[OFBT] metagenome; hydrothermal vent
403
315
-
Ser
GGA
[ENA]
¢þ
>WENV181212736
OFBT01002802
[OFBT] metagenome; hydrothermal vent
492
416
-
Pro
CGG
[ENA]
¢þ
>WENV181212670
OFBT01000065
[OFBT] metagenome; hydrothermal vent
589
674
+
Gln
CTG
[ENA]
¢þ
>WENV181212731
OFBT01001875
[OFBT] metagenome; hydrothermal vent
629
715
+
Leu
GAG
[ENA]
¢þ
>WENV181212727
OFBT01001290
[OFBT] metagenome; hydrothermal vent
655
583
-
Val
CAC
[ENA]
¢þ
>WENV181212710
OFBT01000511
[OFBT] metagenome; hydrothermal vent
666
578
-
Ser
GCT
[ENA]
¢þ
>WENV181212722
OFBT01000950
[OFBT] metagenome; hydrothermal vent
717
789
+
Gln
CTG
[ENA]
¢þ
>WENV181212730
OFBT01001694
[OFBT] metagenome; hydrothermal vent
722
648
-
Pro
GGG
[ENA]
¢þ
>WENV181212728
OFBT01001308
[OFBT] metagenome; hydrothermal vent
762
675
-
Ser
TGA
[ENA]
¢þ
>WENV181212729
OFBT01001492
[OFBT] metagenome; hydrothermal vent
798
880
+
Leu
TAG
[ENA]
¢þ
>WENV181212725
OFBT01001132
[OFBT] metagenome; hydrothermal vent
807
733
-
Leu
CAA
[ENA]
¢þ
>WENV181212680
OFBT01000092
[OFBT] metagenome; hydrothermal vent
814
887
+
Ala
TGC
[ENA]
¢þ
>WENV181212723
OFBT01000950
[OFBT] metagenome; hydrothermal vent
824
897
+
Glu
CTC
[ENA]
¢þ
>WENV181212721
OFBT01000945
[OFBT] metagenome; hydrothermal vent
875
800
-
Asn
GTT
[ENA]
¢þ
>WENV181212726
OFBT01001290
[OFBT] metagenome; hydrothermal vent
901
976
+
Gly
GCC
[ENA]
¢þ
>WENV181212720
OFBT01000945
[OFBT] metagenome; hydrothermal vent
1003
1077
+
Ile2
CAT
[ENA]
¢þ
>WENV181212724
OFBT01001029
[OFBT] metagenome; hydrothermal vent
1189
1265
+
Leu
TAA
[ENA]
¢þ
>WENV181212719
OFBT01000920
[OFBT] metagenome; hydrothermal vent
1208
1132
-
Asp
GTC
[ENA]
¢þ
>WENV181212712
OFBT01000676
[OFBT] metagenome; hydrothermal vent
1226
1153
-
Ile2
CAT
[ENA]
¢þ
>WENV181212718
OFBT01000920
[OFBT] metagenome; hydrothermal vent
1318
1243
-
Glu
TTC
[ENA]
¢þ
>WENV181212715
OFBT01000903
[OFBT] metagenome; hydrothermal vent
1338
1414
+
Thr
TGT
[ENA]
¢þ
>WENV181212716
OFBT01000904
[OFBT] metagenome; hydrothermal vent
1359
1433
+
Pro
TGG
[ENA]
¢þ
>WENV181212714
OFBT01000793
[OFBT] metagenome; hydrothermal vent
1421
1346
-
Thr
CGT
[ENA]
¢þ
>WENV181212708
OFBT01000500
[OFBT] metagenome; hydrothermal vent
1555
1629
+
Ile2
CAT
[ENA]
¢þ
>WENV181212704
OFBT01000266
[OFBT] metagenome; hydrothermal vent
1630
1556
-
Ile2
CAT
[ENA]
¢þ
>WENV181212691
OFBT01000153
[OFBT] metagenome; hydrothermal vent
1780
1705
-
fMet
CAT
[ENA]
¢þ
>WENV181212707
OFBT01000495
[OFBT] metagenome; hydrothermal vent
1922
1849
-
Arg
CCT
[ENA]
¢þ
>WENV181212703
OFBT01000255
[OFBT] metagenome; hydrothermal vent
1924
1852
-
Gly
TCC
[ENA]
¢þ
>WENV181212701
OFBT01000247
[OFBT] metagenome; hydrothermal vent
2200
2284
+
Ser
TGA
[ENA]
¢þ
>WENV181212698
OFBT01000230
[OFBT] metagenome; hydrothermal vent
2569
2475
-
SeC
TCA
[ENA]
¢þ
>WENV181212697
OFBT01000226
[OFBT] metagenome; hydrothermal vent
2681
2610
-
Glu
TTC
[ENA]
¢þ
>WENV181212658
OFBT01000010
[OFBT] metagenome; hydrothermal vent
2828
2755
-
Gly
CCC
[ENA]
¢þ
>WENV181212694
OFBT01000183
[OFBT] metagenome; hydrothermal vent
3224
3150
-
Arg
TCT
[ENA]
¢þ
>WENV181212702
OFBT01000251
[OFBT] metagenome; hydrothermal vent
3349
3437
+
Ser
GGA
[ENA]
¢þ
>WENV181212699
OFBT01000240
[OFBT] metagenome; hydrothermal vent
3743
3816
+
Thr
TGT
[ENA]
¢þ
>WENV181212695
OFBT01000218
[OFBT] metagenome; hydrothermal vent
3912
3984
+
Gln
CTG
[ENA]
¢þ
>WENV181212663
OFBT01000016
[OFBT] metagenome; hydrothermal vent
3939
3863
-
Pro
CGG
[ENA]
¢þ
>WENV181212696
OFBT01000218
[OFBT] metagenome; hydrothermal vent
4023
4096
+
Glu
CTC
[ENA]
¢þ
>WENV181212674
OFBT01000080
[OFBT] metagenome; hydrothermal vent
4233
4306
+
Lys
TTT
[ENA]
¢þ
>WENV181212666
OFBT01000044
[OFBT] metagenome; hydrothermal vent
4333
4408
+
Thr
CGT
[ENA]
¢þ
>WENV181212693
OFBT01000175
[OFBT] metagenome; hydrothermal vent
4438
4511
+
Trp
CCA
[ENA]
¢þ
>WENV181212682
OFBT01000108
[OFBT] metagenome; hydrothermal vent
4568
4494
-
Arg
TCT
[ENA]
¢þ
>WENV181212690
OFBT01000153
[OFBT] metagenome; hydrothermal vent
4611
4518
-
Ser
GCT
[ENA]
¢þ
>WENV181212689
OFBT01000153
[OFBT] metagenome; hydrothermal vent
4724
4635
-
Ser
TGA
[ENA]
¢þ
>WENV181212675
OFBT01000080
[OFBT] metagenome; hydrothermal vent
4752
4827
+
Glu
TTC
[ENA]
¢þ
>WENV181212676
OFBT01000080
[OFBT] metagenome; hydrothermal vent
4863
4937
+
Asp
GTC
[ENA]
¢þ
>WENV181212692
OFBT01000170
[OFBT] metagenome; hydrothermal vent
5086
5160
+
Pro
GGG
[ENA]
¢þ
>WENV181212677
OFBT01000080
[OFBT] metagenome; hydrothermal vent
5395
5469
+
Asp
GTC
[ENA]
¢þ
>WENV181212685
OFBT01000150
[OFBT] metagenome; hydrothermal vent
5483
5396
-
Leu
CAG
[ENA]
¢þ
>WENV181212668
OFBT01000064
[OFBT] metagenome; hydrothermal vent
5488
5560
+
Arg
CCT
[ENA]
¢þ
>WENV181212678
OFBT01000080
[OFBT] metagenome; hydrothermal vent
5488
5561
+
Phe
GAA
[ENA]
¢þ
>WENV181212669
OFBT01000064
[OFBT] metagenome; hydrothermal vent
5571
5643
+
Cys
GCA
[ENA]
¢þ
>WENV181212665
OFBT01000026
[OFBT] metagenome; hydrothermal vent
5685
5610
-
Lys
CTT
[ENA]
¢þ
>WENV181212686
OFBT01000152
[OFBT] metagenome; hydrothermal vent
5697
5772
+
Leu
TAA
[ENA]
¢þ
>WENV181212659
OFBT01000011
[OFBT] metagenome; hydrothermal vent
5768
5843
+
Thr
GGT
[ENA]
¢þ
>WENV181212687
OFBT01000152
[OFBT] metagenome; hydrothermal vent
5773
5844
+
His
GTG
[ENA]
¢þ
>WENV181212673
OFBT01000078
[OFBT] metagenome; hydrothermal vent
5774
5847
+
Asn
GTT
[ENA]
¢þ
>WENV181212660
OFBT01000011
[OFBT] metagenome; hydrothermal vent
5882
5955
+
Met
CAT
[ENA]
¢þ
>WENV181212661
OFBT01000011
[OFBT] metagenome; hydrothermal vent
6094
6167
+
Trp
CCA
[ENA]
¢þ
>WENV181212679
OFBT01000088
[OFBT] metagenome; hydrothermal vent
6390
6308
-
Leu
TAG
[ENA]
¢þ
>WENV181212662
OFBT01000013
[OFBT] metagenome; hydrothermal vent
6634
6561
-
Ala
GGC
[ENA]
¢þ
>WENV181212681
OFBT01000101
[OFBT] metagenome; hydrothermal vent
6806
6882
+
fMet
CAT
[ENA]
¢þ
>WENV181212667
OFBT01000055
[OFBT] metagenome; hydrothermal vent
7687
7759
+
Gln
TTG
[ENA]
¢þ
>WENV181212664
OFBT01000026
[OFBT] metagenome; hydrothermal vent
8223
8148
-
His
GTG
[ENA]
¢þ
>WENV181212671
OFBT01000065
[OFBT] metagenome; hydrothermal vent
8656
8574
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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