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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFBX] metagenome; hydrothermal vent
HIT:
149 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181214334
OFBX01003234
[OFBX] metagenome; hydrothermal vent
22
98
+
Arg
TCT
[ENA]
¢þ
>WENV181214290
OFBX01001003
[OFBX] metagenome; hydrothermal vent
72
156
+
Leu
CAA
[ENA]
¢þ
>WENV181214336
OFBX01003308
[OFBX] metagenome; hydrothermal vent
82
156
+
Gln
TTG
[ENA]
¢þ
>WENV181214300
OFBX01001138
[OFBX] metagenome; hydrothermal vent
86
1
-
Leu
CAA
[ENA]
¢þ
>WENV181214382
OFBX01007985
[OFBX] metagenome; hydrothermal vent
87
161
+
Val
GAC
[ENA]
¢þ
>WENV181214332
OFBX01002896
[OFBX] metagenome; hydrothermal vent
92
6
-
Leu
GAG
[ENA]
¢þ
>WENV181214362
OFBX01005231
[OFBX] metagenome; hydrothermal vent
99
172
+
Cys
GCA
[ENA]
¢þ
>WENV181214364
OFBX01005257
[OFBX] metagenome; hydrothermal vent
107
17
-
Sup
TCA
[ENA]
¢þ
>WENV181214346
OFBX01003583
[OFBX] metagenome; hydrothermal vent
112
36
-
Arg
GCG
[ENA]
¢þ
>WENV181214379
OFBX01006737
[OFBX] metagenome; hydrothermal vent
123
198
+
Glu
CTC
[ENA]
¢þ
>WENV181214301
OFBX01001145
[OFBX] metagenome; hydrothermal vent
131
55
-
Val
GAC
[ENA]
¢þ
>WENV181214363
OFBX01005245
[OFBX] metagenome; hydrothermal vent
134
209
+
Trp
CCA
[ENA]
¢þ
>WENV181214333
OFBX01002980
[OFBX] metagenome; hydrothermal vent
140
66
-
Glu
TTC
[ENA]
¢þ
>WENV181214258
OFBX01000027
[OFBX] metagenome; hydrothermal vent
141
66
-
Thr
GGT
[ENA]
¢þ
>WENV181214335
OFBX01003234
[OFBX] metagenome; hydrothermal vent
141
225
+
Leu
TAG
[ENA]
¢þ
>WENV181214314
OFBX01001989
[OFBX] metagenome; hydrothermal vent
143
67
-
Ile2
CAT
[ENA]
¢þ
>WENV181214372
OFBX01006076
[OFBX] metagenome; hydrothermal vent
146
220
+
Val
GAC
[ENA]
¢þ
>WENV181214343
OFBX01003442
[OFBX] metagenome; hydrothermal vent
158
86
-
His
GTG
[ENA]
¢þ
>WENV181214378
OFBX01006548
[OFBX] metagenome; hydrothermal vent
166
89
-
Pro
TGG
[ENA]
¢þ
>WENV181214365
OFBX01005290
[OFBX] metagenome; hydrothermal vent
169
95
-
Val
TAC
[ENA]
¢þ
>WENV181214313
OFBX01001949
[OFBX] metagenome; hydrothermal vent
171
96
-
Asn
GTT
[ENA]
¢þ
>WENV181214380
OFBX01006953
[OFBX] metagenome; hydrothermal vent
176
251
+
Pro
TGG
[ENA]
¢þ
>WENV181214337
OFBX01003308
[OFBX] metagenome; hydrothermal vent
189
265
+
fMet
CAT
[ENA]
¢þ
>WENV181214377
OFBX01006299
[OFBX] metagenome; hydrothermal vent
198
122
-
Tyr
GTA
[ENA]
¢þ
>WENV181214345
OFBX01003467
[OFBX] metagenome; hydrothermal vent
207
131
-
Arg
TCT
[ENA]
¢þ
>WENV181214347
OFBX01003704
[OFBX] metagenome; hydrothermal vent
219
304
+
Leu
CAA
[ENA]
¢þ
>WENV181214354
OFBX01004815
[OFBX] metagenome; hydrothermal vent
229
304
+
Pro
TGG
[ENA]
¢þ
>WENV181214257
OFBX01000027
[OFBX] metagenome; hydrothermal vent
230
157
-
Gly
TCC
[ENA]
¢þ
>WENV181214350
OFBX01003832
[OFBX] metagenome; hydrothermal vent
253
180
-
Met
CAT
[ENA]
¢þ
>WENV181214326
OFBX01002410
[OFBX] metagenome; hydrothermal vent
260
188
-
His
GTG
[ENA]
¢þ
>WENV181214366
OFBX01005463
[OFBX] metagenome; hydrothermal vent
272
197
-
Lys
CTT
[ENA]
¢þ
>WENV181214307
OFBX01001658
[OFBX] metagenome; hydrothermal vent
280
207
-
Ala
TGC
[ENA]
¢þ
>WENV181214376
OFBX01006299
[OFBX] metagenome; hydrothermal vent
285
208
-
Pro
TGG
[ENA]
¢þ
>WENV181214370
OFBX01005743
[OFBX] metagenome; hydrothermal vent
298
222
-
Val
CAC
[ENA]
¢þ
>WENV181214361
OFBX01005123
[OFBX] metagenome; hydrothermal vent
299
223
-
Asp
GTC
[ENA]
¢þ
>WENV181214344
OFBX01003467
[OFBX] metagenome; hydrothermal vent
302
225
-
Pro
TGG
[ENA]
¢þ
>WENV181214265
OFBX01000145
[OFBX] metagenome; hydrothermal vent
303
216
-
Ser
GGA
[ENA]
¢þ
>WENV181214381
OFBX01007084
[OFBX] metagenome; hydrothermal vent
303
390
+
Ser
GGA
[ENA]
¢þ
>WENV181214299
OFBX01001121
[OFBX] metagenome; hydrothermal vent
310
226
-
Leu
TAG
[ENA]
¢þ
>WENV181214373
OFBX01006221
[OFBX] metagenome; hydrothermal vent
313
240
-
Gly
GCC
[ENA]
¢þ
>WENV181214367
OFBX01005606
[OFBX] metagenome; hydrothermal vent
315
240
-
Gly
GCC
[ENA]
¢þ
>WENV181214306
OFBX01001635
[OFBX] metagenome; hydrothermal vent
321
231
-
Ser
CGA
[ENA]
¢þ
>WENV181214311
OFBX01001752
[OFBX] metagenome; hydrothermal vent
322
397
+
Arg
CCT
[ENA]
¢þ
>WENV181214256
OFBX01000027
[OFBX] metagenome; hydrothermal vent
334
250
-
Tyr
GTA
[ENA]
¢þ
>WENV181214331
OFBX01002741
[OFBX] metagenome; hydrothermal vent
335
245
-
Ser
TGA
[ENA]
¢þ
>WENV181214316
OFBX01002035
[OFBX] metagenome; hydrothermal vent
338
244
-
Ser
CGA
[ENA]
¢þ
>WENV181214348
OFBX01003812
[OFBX] metagenome; hydrothermal vent
346
422
+
Asp
GTC
[ENA]
¢þ
>WENV181214280
OFBX01000477
[OFBX] metagenome; hydrothermal vent
357
283
-
Arg
CCT
[ENA]
¢þ
>WENV181214342
OFBX01003442
[OFBX] metagenome; hydrothermal vent
361
287
-
Glu
TTC
[ENA]
¢þ
>WENV181214375
OFBX01006299
[OFBX] metagenome; hydrothermal vent
374
298
-
Thr
TGT
[ENA]
¢þ
>WENV181214360
OFBX01005123
[OFBX] metagenome; hydrothermal vent
388
313
-
Val
TAC
[ENA]
¢þ
>WENV181214352
OFBX01004302
[OFBX] metagenome; hydrothermal vent
406
330
-
Arg
GCG
[ENA]
¢þ
>WENV181214298
OFBX01001121
[OFBX] metagenome; hydrothermal vent
407
331
-
Arg
TCT
[ENA]
¢þ
>WENV181214369
OFBX01005668
[OFBX] metagenome; hydrothermal vent
413
326
-
Leu
CAA
[ENA]
¢þ
>WENV181214293
OFBX01001109
[OFBX] metagenome; hydrothermal vent
430
355
-
Phe
GAA
[ENA]
¢þ
>WENV181214269
OFBX01000197
[OFBX] metagenome; hydrothermal vent
434
510
+
Ile
GAT
[ENA]
¢þ
>WENV181214374
OFBX01006256
[OFBX] metagenome; hydrothermal vent
439
350
-
Ser
GCT
[ENA]
¢þ
>WENV181214294
OFBX01001112
[OFBX] metagenome; hydrothermal vent
440
517
+
Pro
CGG
[ENA]
¢þ
>WENV181214341
OFBX01003442
[OFBX] metagenome; hydrothermal vent
459
384
-
Met
CAT
[ENA]
¢þ
>WENV181214351
OFBX01004126
[OFBX] metagenome; hydrothermal vent
466
392
-
Ala
CGC
[ENA]
¢þ
>WENV181214330
OFBX01002741
[OFBX] metagenome; hydrothermal vent
469
381
-
Leu
TAA
[ENA]
¢þ
>WENV181214359
OFBX01005123
[OFBX] metagenome; hydrothermal vent
475
400
-
Glu
TTC
[ENA]
¢þ
>WENV181214371
OFBX01005842
[OFBX] metagenome; hydrothermal vent
479
392
-
Leu
TAG
[ENA]
¢þ
>WENV181214355
OFBX01004832
[OFBX] metagenome; hydrothermal vent
486
562
+
Asp
GTC
[ENA]
¢þ
>WENV181214320
OFBX01002111
[OFBX] metagenome; hydrothermal vent
496
420
-
Met
CAT
[ENA]
¢þ
>WENV181214357
OFBX01004927
[OFBX] metagenome; hydrothermal vent
503
429
-
Cys
GCA
[ENA]
¢þ
>WENV181214353
OFBX01004429
[OFBX] metagenome; hydrothermal vent
508
603
+
Ser
GGA
[ENA]
¢þ
>WENV181214297
OFBX01001121
[OFBX] metagenome; hydrothermal vent
509
433
-
Arg
TCG
[ENA]
¢þ
>WENV181214368
OFBX01005668
[OFBX] metagenome; hydrothermal vent
521
445
-
Arg
TCT
[ENA]
¢þ
>WENV181214279
OFBX01000404
[OFBX] metagenome; hydrothermal vent
534
458
-
Val
GAC
[ENA]
¢þ
>WENV181214270
OFBX01000197
[OFBX] metagenome; hydrothermal vent
543
618
+
Ala
TGC
[ENA]
¢þ
>WENV181214340
OFBX01003442
[OFBX] metagenome; hydrothermal vent
563
488
-
Asn
GTT
[ENA]
¢þ
>WENV181214323
OFBX01002210
[OFBX] metagenome; hydrothermal vent
577
502
-
Trp
CCA
[ENA]
¢þ
>WENV181214358
OFBX01005123
[OFBX] metagenome; hydrothermal vent
580
505
-
Lys
TTT
[ENA]
¢þ
>WENV181214356
OFBX01004832
[OFBX] metagenome; hydrothermal vent
580
654
+
Lys
TTT
[ENA]
¢þ
>WENV181214329
OFBX01002741
[OFBX] metagenome; hydrothermal vent
590
516
-
Cys
GCA
[ENA]
¢þ
>WENV181214349
OFBX01003821
[OFBX] metagenome; hydrothermal vent
591
517
-
Thr
GGT
[ENA]
¢þ
>WENV181214303
OFBX01001315
[OFBX] metagenome; hydrothermal vent
597
673
+
Ile2
CAT
[ENA]
¢þ
>WENV181214296
OFBX01001121
[OFBX] metagenome; hydrothermal vent
603
527
-
His
GTG
[ENA]
¢þ
>WENV181214319
OFBX01002111
[OFBX] metagenome; hydrothermal vent
606
516
-
Ser
GCT
[ENA]
¢þ
>WENV181214339
OFBX01003442
[OFBX] metagenome; hydrothermal vent
659
583
-
Phe
GAA
[ENA]
¢þ
>WENV181214317
OFBX01002039
[OFBX] metagenome; hydrothermal vent
660
747
+
Leu
TAA
[ENA]
¢þ
>WENV181214328
OFBX01002741
[OFBX] metagenome; hydrothermal vent
668
592
-
Gly
GCC
[ENA]
¢þ
>WENV181214325
OFBX01002247
[OFBX] metagenome; hydrothermal vent
672
597
-
Ala
TGC
[ENA]
¢þ
>WENV181214291
OFBX01001053
[OFBX] metagenome; hydrothermal vent
677
591
-
Leu
GAG
[ENA]
¢þ
>WENV181214338
OFBX01003422
[OFBX] metagenome; hydrothermal vent
699
623
-
Arg
CCG
[ENA]
¢þ
>WENV181214295
OFBX01001121
[OFBX] metagenome; hydrothermal vent
724
647
-
Pro
TGG
[ENA]
¢þ
>WENV181214324
OFBX01002247
[OFBX] metagenome; hydrothermal vent
751
675
-
Ile
GAT
[ENA]
¢þ
>WENV181214305
OFBX01001573
[OFBX] metagenome; hydrothermal vent
761
685
-
Thr
CGT
[ENA]
¢þ
>WENV181214321
OFBX01002196
[OFBX] metagenome; hydrothermal vent
767
843
+
Pro
TGG
[ENA]
¢þ
>WENV181214327
OFBX01002419
[OFBX] metagenome; hydrothermal vent
775
849
+
fMet
CAT
[ENA]
¢þ
>WENV181214276
OFBX01000239
[OFBX] metagenome; hydrothermal vent
780
867
+
Ser
GGA
[ENA]
¢þ
>WENV181214312
OFBX01001848
[OFBX] metagenome; hydrothermal vent
781
853
+
Arg
TCG
[ENA]
¢þ
>WENV181214302
OFBX01001208
[OFBX] metagenome; hydrothermal vent
864
789
-
Ala
GGC
[ENA]
¢þ
>WENV181214322
OFBX01002196
[OFBX] metagenome; hydrothermal vent
864
940
+
His
GTG
[ENA]
¢þ
>WENV181214315
OFBX01002035
[OFBX] metagenome; hydrothermal vent
874
798
-
Arg
ACG
[ENA]
¢þ
>WENV181214318
OFBX01002078
[OFBX] metagenome; hydrothermal vent
880
795
-
Ser
TGA
[ENA]
¢þ
>WENV181214310
OFBX01001715
[OFBX] metagenome; hydrothermal vent
903
819
-
Leu
TAG
[ENA]
¢þ
>WENV181214285
OFBX01000563
[OFBX] metagenome; hydrothermal vent
997
910
-
Ser
TGA
[ENA]
¢þ
>WENV181214309
OFBX01001715
[OFBX] metagenome; hydrothermal vent
997
921
-
Arg
TCT
[ENA]
¢þ
>WENV181214260
OFBX01000041
[OFBX] metagenome; hydrothermal vent
1038
1113
+
Asn
GTT
[ENA]
¢þ
>WENV181214292
OFBX01001104
[OFBX] metagenome; hydrothermal vent
1060
985
-
Glu
TTC
[ENA]
¢þ
>WENV181214304
OFBX01001361
[OFBX] metagenome; hydrothermal vent
1065
1141
+
Arg
GCG
[ENA]
¢þ
>WENV181214284
OFBX01000563
[OFBX] metagenome; hydrothermal vent
1075
1002
-
Cys
GCA
[ENA]
¢þ
>WENV181214308
OFBX01001715
[OFBX] metagenome; hydrothermal vent
1098
1022
-
Arg
TCG
[ENA]
¢þ
>WENV181214286
OFBX01000687
[OFBX] metagenome; hydrothermal vent
1103
1179
+
Ile2
CAT
[ENA]
¢þ
>WENV181214283
OFBX01000563
[OFBX] metagenome; hydrothermal vent
1167
1080
-
Leu
TAA
[ENA]
¢þ
>WENV181214288
OFBX01000866
[OFBX] metagenome; hydrothermal vent
1225
1150
-
Ala
TGC
[ENA]
¢þ
>WENV181214278
OFBX01000363
[OFBX] metagenome; hydrothermal vent
1291
1366
+
Thr
TGT
[ENA]
¢þ
>WENV181214282
OFBX01000563
[OFBX] metagenome; hydrothermal vent
1299
1225
-
Gly
GCC
[ENA]
¢þ
>WENV181214287
OFBX01000866
[OFBX] metagenome; hydrothermal vent
1361
1285
-
Ile
GAT
[ENA]
¢þ
>WENV181214289
OFBX01000894
[OFBX] metagenome; hydrothermal vent
1395
1469
+
Asn
GTT
[ENA]
¢þ
>WENV181214281
OFBX01000525
[OFBX] metagenome; hydrothermal vent
1475
1385
-
Sup
TCA
[ENA]
¢þ
>WENV181214266
OFBX01000180
[OFBX] metagenome; hydrothermal vent
1536
1612
+
Ile
GAT
[ENA]
¢þ
>WENV181214246
OFBX01000011
[OFBX] metagenome; hydrothermal vent
1546
1455
-
Ser
GCT
[ENA]
¢þ
>WENV181214275
OFBX01000226
[OFBX] metagenome; hydrothermal vent
1620
1546
-
Thr
GGT
[ENA]
¢þ
>WENV181214267
OFBX01000180
[OFBX] metagenome; hydrothermal vent
1620
1695
+
Ala
TGC
[ENA]
¢þ
>WENV181214274
OFBX01000226
[OFBX] metagenome; hydrothermal vent
1807
1731
-
Gly
TCC
[ENA]
¢þ
>WENV181214273
OFBX01000226
[OFBX] metagenome; hydrothermal vent
1943
1858
-
Tyr
GTA
[ENA]
¢þ
>WENV181214272
OFBX01000226
[OFBX] metagenome; hydrothermal vent
2042
1966
-
Thr
TGT
[ENA]
¢þ
>WENV181214277
OFBX01000259
[OFBX] metagenome; hydrothermal vent
2055
1969
-
Leu
CAG
[ENA]
¢þ
>WENV181214268
OFBX01000186
[OFBX] metagenome; hydrothermal vent
2185
2100
-
Leu
GAG
[ENA]
¢þ
>WENV181214271
OFBX01000214
[OFBX] metagenome; hydrothermal vent
2592
2667
+
Phe
GAA
[ENA]
¢þ
>WENV181214245
OFBX01000010
[OFBX] metagenome; hydrothermal vent
3061
3137
+
Met
CAT
[ENA]
¢þ
>WENV181214255
OFBX01000026
[OFBX] metagenome; hydrothermal vent
4985
4909
-
Glu
TTC
[ENA]
¢þ
>WENV181214254
OFBX01000026
[OFBX] metagenome; hydrothermal vent
5140
5066
-
Glu
TTC
[ENA]
¢þ
>WENV181214253
OFBX01000026
[OFBX] metagenome; hydrothermal vent
5235
5160
-
Ala
GGC
[ENA]
¢þ
>WENV181214264
OFBX01000066
[OFBX] metagenome; hydrothermal vent
5554
5631
+
Pro
GGG
[ENA]
¢þ
>WENV181214263
OFBX01000049
[OFBX] metagenome; hydrothermal vent
7398
7482
+
Leu
CAA
[ENA]
¢þ
>WENV181214252
OFBX01000025
[OFBX] metagenome; hydrothermal vent
8313
8237
-
fMet
CAT
[ENA]
¢þ
>WENV181214262
OFBX01000046
[OFBX] metagenome; hydrothermal vent
10542
10458
-
Leu
TAG
[ENA]
¢þ
>WENV181214261
OFBX01000041
[OFBX] metagenome; hydrothermal vent
11422
11346
-
Arg
CCT
[ENA]
¢þ
>WENV181214244
OFBX01000009
[OFBX] metagenome; hydrothermal vent
12725
12650
-
His
GTG
[ENA]
¢þ
>WENV181214249
OFBX01000019
[OFBX] metagenome; hydrothermal vent
12807
12721
-
Leu
TAA
[ENA]
¢þ
>WENV181214243
OFBX01000009
[OFBX] metagenome; hydrothermal vent
12810
12734
-
Arg
TCT
[ENA]
¢þ
>WENV181214242
OFBX01000009
[OFBX] metagenome; hydrothermal vent
12962
12886
-
Pro
TGG
[ENA]
¢þ
>WENV181214259
OFBX01000034
[OFBX] metagenome; hydrothermal vent
13046
13122
+
Arg
CCG
[ENA]
¢þ
>WENV181214251
OFBX01000025
[OFBX] metagenome; hydrothermal vent
16889
16814
-
Phe
GAA
[ENA]
¢þ
>WENV181214250
OFBX01000022
[OFBX] metagenome; hydrothermal vent
19710
19635
-
Trp
CCA
[ENA]
¢þ
>WENV181214247
OFBX01000013
[OFBX] metagenome; hydrothermal vent
20453
20538
+
Leu
GAG
[ENA]
¢þ
>WENV181214241
OFBX01000007
[OFBX] metagenome; hydrothermal vent
22035
21962
-
Cys
GCA
[ENA]
¢þ
>WENV181214240
OFBX01000007
[OFBX] metagenome; hydrothermal vent
22168
22093
-
Gly
GCC
[ENA]
¢þ
>WENV181214239
OFBX01000007
[OFBX] metagenome; hydrothermal vent
22932
22856
-
Arg
ACG
[ENA]
¢þ
>WENV181214248
OFBX01000014
[OFBX] metagenome; hydrothermal vent
24537
24626
+
Ser
TGA
[ENA]
¢þ
>WENV181214238
OFBX01000006
[OFBX] metagenome; hydrothermal vent
27085
27160
+
Lys
TTT
[ENA]
¢þ
>WENV181214237
OFBX01000003
[OFBX] metagenome; hydrothermal vent
27425
27349
-
Ile2
CAT
[ENA]
¢þ
>WENV181214236
OFBX01000003
[OFBX] metagenome; hydrothermal vent
30682
30608
-
Gln
TTG
[ENA]
¢þ
>WENV181214234
OFBX01000001
[OFBX] metagenome; hydrothermal vent
43521
43596
+
Val
TAC
[ENA]
¢þ
>WENV181214235
OFBX01000001
[OFBX] metagenome; hydrothermal vent
43609
43685
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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