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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OFEM] coral metagenome; NA
HIT:
114 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181232285
OFEM01133805
[OFEM] coral metagenome; NA
1
72
+
His
GTG
[ENA]
¢þ
>WENV181232277
OFEM01091459
[OFEM] coral metagenome; NA
3
78
+
Thr
CGT
[ENA]
¢þ
>WENV181232264
OFEM01064975
[OFEM] coral metagenome; NA
8
81
+
His
GTG
[ENA]
¢þ
>WENV181232254
OFEM01048723
[OFEM] coral metagenome; NA
10
81
+
His
GTG
[ENA]
¢þ
>WENV181232272
OFEM01083241
[OFEM] coral metagenome; NA
11
85
+
Arg
ACG
[ENA]
¢þ
>WENV181232257
OFEM01055544
[OFEM] coral metagenome; NA
12
84
+
Met
CAT
[ENA]
¢þ
>WENV181232266
OFEM01066227
[OFEM] coral metagenome; NA
16
97
+
Ser
TGA
[ENA]
¢þ
>WENV181232284
OFEM01129710
[OFEM] coral metagenome; NA
41
115
+
Val
TAC
[ENA]
¢þ
>WENV181232265
OFEM01065121
[OFEM] coral metagenome; NA
42
125
+
Leu
CAG
[ENA]
¢þ
>WENV181232202
OFEM01005833
[OFEM] coral metagenome; NA
67
151
+
Leu
CAG
[ENA]
¢þ
>WENV181232253
OFEM01047884
[OFEM] coral metagenome; NA
78
153
+
Cys
GCA
[ENA]
¢þ
>WENV181232228
OFEM01015425
[OFEM] coral metagenome; NA
112
40
-
Thr
GGT
[ENA]
¢þ
>WENV181232292
OFEM01162531
[OFEM] coral metagenome; NA
114
40
-
Thr
TGT
[ENA]
¢þ
>WENV181232255
OFEM01054008
[OFEM] coral metagenome; NA
122
50
-
Thr
GGT
[ENA]
¢þ
>WENV181232201
OFEM01004794
[OFEM] coral metagenome; NA
125
51
-
Arg
ACG
[ENA]
¢þ
>WENV181232258
OFEM01055544
[OFEM] coral metagenome; NA
126
197
+
Asp
GTC
[ENA]
¢þ
>WENV181232232
OFEM01017737
[OFEM] coral metagenome; NA
129
202
+
Met
CAT
[ENA]
¢þ
>WENV181232288
OFEM01137502
[OFEM] coral metagenome; NA
139
67
-
Glu
CTC
[ENA]
¢þ
>WENV181232273
OFEM01084617
[OFEM] coral metagenome; NA
149
75
-
Arg
ACG
[ENA]
¢þ
>WENV181232244
OFEM01031522
[OFEM] coral metagenome; NA
171
245
+
Met
CAT
[ENA]
¢þ
>WENV181232271
OFEM01081330
[OFEM] coral metagenome; NA
184
101
-
Ser
TGA
[ENA]
¢þ
>WENV181232275
OFEM01089032
[OFEM] coral metagenome; NA
184
258
+
Thr
CGT
[ENA]
¢þ
>WENV181232291
OFEM01158647
[OFEM] coral metagenome; NA
200
119
-
Leu
AAG
[ENA]
¢þ
>WENV181232283
OFEM01129359
[OFEM] coral metagenome; NA
203
119
-
Leu
CAG
[ENA]
¢þ
>WENV181232269
OFEM01073576
[OFEM] coral metagenome; NA
206
289
+
Leu
TAA
[ENA]
¢þ
>WENV181232219
OFEM01012707
[OFEM] coral metagenome; NA
213
132
-
Leu
AAG
[ENA]
¢þ
>WENV181232287
OFEM01136865
[OFEM] coral metagenome; NA
272
344
+
Asn
ATT
[ENA]
¢þ
>WENV181232185
OFEM01000266
[OFEM] coral metagenome; NA
295
367
+
Thr
CGT
[ENA]
¢þ
>WENV181232242
OFEM01030073
[OFEM] coral metagenome; NA
306
381
+
Val
TAC
[ENA]
¢þ
>WENV181232249
OFEM01039287
[OFEM] coral metagenome; NA
319
248
-
Pro
CGG
[ENA]
¢þ
>WENV181232289
OFEM01149697
[OFEM] coral metagenome; NA
348
421
+
Cys
GCA
[ENA]
¢þ
>WENV181232294
OFEM01164534
[OFEM] coral metagenome; NA
351
422
+
Asp
ATC
[ENA]
¢þ
>WENV181232267
OFEM01067861
[OFEM] coral metagenome; NA
359
287
-
Thr
GGT
[ENA]
¢þ
>WENV181232263
OFEM01063969
[OFEM] coral metagenome; NA
367
443
+
Asn
GTT
[ENA]
¢þ
>WENV181232290
OFEM01158519
[OFEM] coral metagenome; NA
376
295
-
Ser
TGA
[ENA]
¢þ
>WENV181232236
OFEM01026924
[OFEM] coral metagenome; NA
410
336
-
Thr
GGT
[ENA]
¢þ
>WENV181232262
OFEM01063895
[OFEM] coral metagenome; NA
422
350
-
Pro
AGG
[ENA]
¢þ
>WENV181232280
OFEM01107561
[OFEM] coral metagenome; NA
443
516
+
Pro
TGG
[ENA]
¢þ
>WENV181232261
OFEM01063658
[OFEM] coral metagenome; NA
450
376
-
Thr
TGT
[ENA]
¢þ
>WENV181232295
OFEM01166275
[OFEM] coral metagenome; NA
465
383
-
Leu
AAG
[ENA]
¢þ
>WENV181232193
OFEM01003116
[OFEM] coral metagenome; NA
501
430
-
Met
CAT
[ENA]
¢þ
>WENV181232293
OFEM01164264
[OFEM] coral metagenome; NA
511
439
-
Val
AAC
[ENA]
¢þ
>WENV181232282
OFEM01112216
[OFEM] coral metagenome; NA
512
438
-
Ser
TGA
[ENA]
¢þ
>WENV181232270
OFEM01075239
[OFEM] coral metagenome; NA
531
450
-
Ser
CGA
[ENA]
¢þ
>WENV181232268
OFEM01072620
[OFEM] coral metagenome; NA
542
618
+
Thr
GGT
[ENA]
¢þ
>WENV181232256
OFEM01054905
[OFEM] coral metagenome; NA
545
472
-
Cys
GCA
[ENA]
¢þ
>WENV181232274
OFEM01084811
[OFEM] coral metagenome; NA
550
466
-
Ser
GCT
[ENA]
¢þ
>WENV181232286
OFEM01136818
[OFEM] coral metagenome; NA
552
635
+
Leu
TAA
[ENA]
¢þ
>WENV181232227
OFEM01015370
[OFEM] coral metagenome; NA
555
472
-
Leu
TAG
[ENA]
¢þ
>WENV181232243
OFEM01030131
[OFEM] coral metagenome; NA
588
662
+
His
GTG
[ENA]
¢þ
>WENV181232208
OFEM01008042
[OFEM] coral metagenome; NA
595
666
+
Pro
AGG
[ENA]
¢þ
>WENV181232195
OFEM01003447
[OFEM] coral metagenome; NA
599
671
+
Gly
TCC
[ENA]
¢þ
>WENV181232251
OFEM01042502
[OFEM] coral metagenome; NA
607
681
+
Arg
TCG
[ENA]
¢þ
>WENV181232252
OFEM01045878
[OFEM] coral metagenome; NA
612
542
-
Gly
GCC
[ENA]
¢þ
>WENV181232234
OFEM01022050
[OFEM] coral metagenome; NA
625
698
+
Lys
CTT
[ENA]
¢þ
>WENV181232245
OFEM01031805
[OFEM] coral metagenome; NA
627
556
-
Pro
TGG
[ENA]
¢þ
>WENV181232246
OFEM01033155
[OFEM] coral metagenome; NA
629
703
+
Thr
CGT
[ENA]
¢þ
>WENV181232207
OFEM01007001
[OFEM] coral metagenome; NA
635
707
+
Glu
TTC
[ENA]
¢þ
>WENV181232276
OFEM01089421
[OFEM] coral metagenome; NA
646
573
-
Thr
CGT
[ENA]
¢þ
>WENV181232278
OFEM01096618
[OFEM] coral metagenome; NA
652
733
+
SeC
TCA
[ENA]
¢þ
>WENV181232259
OFEM01059889
[OFEM] coral metagenome; NA
658
731
+
Gln
CTG
[ENA]
¢þ
>WENV181232248
OFEM01036241
[OFEM] coral metagenome; NA
682
754
+
Glu
TTC
[ENA]
¢þ
>WENV181232225
OFEM01015206
[OFEM] coral metagenome; NA
686
758
+
Arg
CCT
[ENA]
¢þ
>WENV181232279
OFEM01100351
[OFEM] coral metagenome; NA
692
763
+
Pro
CGG
[ENA]
¢þ
>WENV181232260
OFEM01061861
[OFEM] coral metagenome; NA
705
622
-
Leu
TAG
[ENA]
¢þ
>WENV181232196
OFEM01004036
[OFEM] coral metagenome; NA
728
646
-
Ser
GCT
[ENA]
¢þ
>WENV181232281
OFEM01108545
[OFEM] coral metagenome; NA
756
684
-
Val
TAC
[ENA]
¢þ
>WENV181232229
OFEM01015952
[OFEM] coral metagenome; NA
758
686
-
Met
CAT
[ENA]
¢þ
>WENV181232250
OFEM01040066
[OFEM] coral metagenome; NA
765
684
-
Leu
AAG
[ENA]
¢þ
>WENV181232218
OFEM01012077
[OFEM] coral metagenome; NA
792
721
-
Asp
GTC
[ENA]
¢þ
>WENV181232222
OFEM01013613
[OFEM] coral metagenome; NA
850
923
+
Val
CAC
[ENA]
¢þ
>WENV181232183
OFEM01000087
[OFEM] coral metagenome; NA
871
944
+
Arg
TCG
[ENA]
¢þ
>WENV181232237
OFEM01027381
[OFEM] coral metagenome; NA
969
894
-
Thr
TGT
[ENA]
¢þ
>WENV181232239
OFEM01028176
[OFEM] coral metagenome; NA
970
1041
+
Gln
TTG
[ENA]
¢þ
>WENV181232235
OFEM01024662
[OFEM] coral metagenome; NA
1021
1094
+
Gln
TTG
[ENA]
¢þ
>WENV181232233
OFEM01019900
[OFEM] coral metagenome; NA
1058
986
-
Val
TAC
[ENA]
¢þ
>WENV181232238
OFEM01028174
[OFEM] coral metagenome; NA
1082
1009
-
His
GTG
[ENA]
¢þ
>WENV181232182
OFEM01000064
[OFEM] coral metagenome; NA
1093
1022
-
Glu
TTC
[ENA]
¢þ
>WENV181232230
OFEM01016132
[OFEM] coral metagenome; NA
1093
1165
+
Val
CAC
[ENA]
¢þ
>WENV181232204
OFEM01006465
[OFEM] coral metagenome; NA
1097
1024
-
Val
TAC
[ENA]
¢þ
>WENV181232189
OFEM01002371
[OFEM] coral metagenome; NA
1100
1174
+
Thr
TGT
[ENA]
¢þ
>WENV181232206
OFEM01006519
[OFEM] coral metagenome; NA
1149
1068
-
Ser
AGA
[ENA]
¢þ
>WENV181232231
OFEM01016486
[OFEM] coral metagenome; NA
1156
1231
+
Arg
TCT
[ENA]
¢þ
>WENV181232198
OFEM01004267
[OFEM] coral metagenome; NA
1191
1262
+
Gly
TCC
[ENA]
¢þ
>WENV181232217
OFEM01012077
[OFEM] coral metagenome; NA
1192
1266
+
Asn
GTT
[ENA]
¢þ
>WENV181232240
OFEM01028309
[OFEM] coral metagenome; NA
1196
1268
+
Thr
GGT
[ENA]
¢þ
>WENV181232241
OFEM01028477
[OFEM] coral metagenome; NA
1221
1150
-
Asp
GTC
[ENA]
¢þ
>WENV181232212
OFEM01010264
[OFEM] coral metagenome; NA
1229
1157
-
Pro
CGG
[ENA]
¢þ
>WENV181232192
OFEM01002548
[OFEM] coral metagenome; NA
1255
1181
-
His
GTG
[ENA]
¢þ
>WENV181232216
OFEM01011351
[OFEM] coral metagenome; NA
1261
1335
+
Arg
TCG
[ENA]
¢þ
>WENV181232221
OFEM01013127
[OFEM] coral metagenome; NA
1266
1341
+
Thr
CGT
[ENA]
¢þ
>WENV181232223
OFEM01013669
[OFEM] coral metagenome; NA
1335
1252
-
Leu
AAG
[ENA]
¢þ
>WENV181232199
OFEM01004267
[OFEM] coral metagenome; NA
1348
1419
+
Gly
TCC
[ENA]
¢þ
>WENV181232247
OFEM01035125
[OFEM] coral metagenome; NA
1500
1428
-
Val
CAC
[ENA]
¢þ
>WENV181232184
OFEM01000087
[OFEM] coral metagenome; NA
1560
1633
+
Arg
TCG
[ENA]
¢þ
>WENV181232226
OFEM01015370
[OFEM] coral metagenome; NA
1592
1511
-
Leu
AAG
[ENA]
¢þ
>WENV181232211
OFEM01009866
[OFEM] coral metagenome; NA
1606
1522
-
Ser
GCT
[ENA]
¢þ
>WENV181232224
OFEM01014483
[OFEM] coral metagenome; NA
1634
1706
+
Arg
CCT
[ENA]
¢þ
>WENV181232188
OFEM01002242
[OFEM] coral metagenome; NA
1820
1745
-
Lys
CTT
[ENA]
¢þ
>WENV181232215
OFEM01010907
[OFEM] coral metagenome; NA
1825
1753
-
Trp
CCA
[ENA]
¢þ
>WENV181232191
OFEM01002371
[OFEM] coral metagenome; NA
1879
1807
-
Glu
TTC
[ENA]
¢þ
>WENV181232210
OFEM01009816
[OFEM] coral metagenome; NA
2023
1942
-
Ser
CGA
[ENA]
¢þ
>WENV181232220
OFEM01012963
[OFEM] coral metagenome; NA
2070
2142
+
Ile
GAT
[ENA]
¢þ
>WENV181232190
OFEM01002371
[OFEM] coral metagenome; NA
2102
2173
+
Glu
TTC
[ENA]
¢þ
>WENV181232205
OFEM01006519
[OFEM] coral metagenome; NA
2103
2022
-
Ser
TGA
[ENA]
¢þ
>WENV181232203
OFEM01006465
[OFEM] coral metagenome; NA
2145
2217
+
Pro
CGG
[ENA]
¢þ
>WENV181232200
OFEM01004267
[OFEM] coral metagenome; NA
2198
2125
-
Gln
TTG
[ENA]
¢þ
>WENV181232197
OFEM01004157
[OFEM] coral metagenome; NA
2239
2312
+
Thr
AGT
[ENA]
¢þ
>WENV181232213
OFEM01010356
[OFEM] coral metagenome; NA
2307
2378
+
His
GTG
[ENA]
¢þ
>WENV181232214
OFEM01010907
[OFEM] coral metagenome; NA
2534
2463
-
Trp
CCA
[ENA]
¢þ
>WENV181232209
OFEM01008341
[OFEM] coral metagenome; NA
2761
2689
-
Thr
GGT
[ENA]
¢þ
>WENV181232187
OFEM01002169
[OFEM] coral metagenome; NA
2951
2880
-
Glu
TTC
[ENA]
¢þ
>WENV181232194
OFEM01003308
[OFEM] coral metagenome; NA
3891
3821
-
Gly
GCC
[ENA]
¢þ
>WENV181232186
OFEM01000487
[OFEM] coral metagenome; NA
5887
5969
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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