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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFGT] soil metagenome; Clay
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181285764
OFGT01013086
[OFGT] soil metagenome; Clay
30
105
+
Thr
TGT
[ENA]
¢þ
>WENV181285777
OFGT01015417
[OFGT] soil metagenome; Clay
45
119
+
Val
GAC
[ENA]
¢þ
>WENV181285676
OFGT01000306
[OFGT] soil metagenome; Clay
56
131
+
Arg
CCT
[ENA]
¢þ
>WENV181285761
OFGT01012924
[OFGT] soil metagenome; Clay
105
191
+
Leu
TAA
[ENA]
¢þ
>WENV181285685
OFGT01001387
[OFGT] soil metagenome; Clay
112
186
+
Ile
GAT
[ENA]
¢þ
>WENV181285776
OFGT01015370
[OFGT] soil metagenome; Clay
115
40
-
Ile2
CAT
[ENA]
¢þ
>WENV181285781
OFGT01016612
[OFGT] soil metagenome; Clay
116
45
-
Gly
CCC
[ENA]
¢þ
>WENV181285715
OFGT01004192
[OFGT] soil metagenome; Clay
121
197
+
fMet
CAT
[ENA]
¢þ
>WENV181285717
OFGT01004370
[OFGT] soil metagenome; Clay
122
198
+
Asp
GTC
[ENA]
¢þ
>WENV181285775
OFGT01014636
[OFGT] soil metagenome; Clay
126
200
+
Thr
GGT
[ENA]
¢þ
>WENV181285743
OFGT01009891
[OFGT] soil metagenome; Clay
127
49
-
Glu
TTC
[ENA]
¢þ
>WENV181285770
OFGT01014072
[OFGT] soil metagenome; Clay
136
60
-
Pro
GGG
[ENA]
¢þ
>WENV181285771
OFGT01014142
[OFGT] soil metagenome; Clay
138
214
+
Arg
ACG
[ENA]
¢þ
>WENV181285739
OFGT01007939
[OFGT] soil metagenome; Clay
139
229
+
Ser
GCT
[ENA]
¢þ
>WENV181285670
OFGT01000185
[OFGT] soil metagenome; Clay
140
222
+
Tyr
GTA
[ENA]
¢þ
>WENV181285755
OFGT01011760
[OFGT] soil metagenome; Clay
147
63
-
Leu
TAG
[ENA]
¢þ
>WENV181285751
OFGT01011008
[OFGT] soil metagenome; Clay
160
236
+
Ile2
CAT
[ENA]
¢þ
>WENV181285752
OFGT01011301
[OFGT] soil metagenome; Clay
175
99
-
Gln
TTG
[ENA]
¢þ
>WENV181285705
OFGT01003053
[OFGT] soil metagenome; Clay
184
259
+
Pro
CGG
[ENA]
¢þ
>WENV181285725
OFGT01005752
[OFGT] soil metagenome; Clay
191
119
-
Gly
CCC
[ENA]
¢þ
>WENV181285773
OFGT01014456
[OFGT] soil metagenome; Clay
195
282
+
Leu
GAG
[ENA]
¢þ
>WENV181285704
OFGT01002611
[OFGT] soil metagenome; Clay
197
108
-
Ser
TGA
[ENA]
¢þ
>WENV181285746
OFGT01010306
[OFGT] soil metagenome; Clay
197
109
-
Tyr
GTA
[ENA]
¢þ
>WENV181285760
OFGT01012440
[OFGT] soil metagenome; Clay
200
126
-
fMet
CAT
[ENA]
¢þ
>WENV181285747
OFGT01010372
[OFGT] soil metagenome; Clay
202
287
+
Leu
CAA
[ENA]
¢þ
>WENV181285737
OFGT01007700
[OFGT] soil metagenome; Clay
203
277
+
Thr
CGT
[ENA]
¢þ
>WENV181285731
OFGT01006378
[OFGT] soil metagenome; Clay
212
285
+
Gly
GCC
[ENA]
¢þ
>WENV181285748
OFGT01010522
[OFGT] soil metagenome; Clay
213
139
-
Asn
GTT
[ENA]
¢þ
>WENV181285719
OFGT01004585
[OFGT] soil metagenome; Clay
214
125
-
Leu
TAA
[ENA]
¢þ
>WENV181285730
OFGT01006304
[OFGT] soil metagenome; Clay
221
149
-
Lys
TTT
[ENA]
¢þ
>WENV181285756
OFGT01012108
[OFGT] soil metagenome; Clay
224
300
+
Pro
CGG
[ENA]
¢þ
>WENV181285707
OFGT01003351
[OFGT] soil metagenome; Clay
230
144
-
Leu
CAA
[ENA]
¢þ
>WENV181285774
OFGT01014593
[OFGT] soil metagenome; Clay
230
157
-
Arg
TCT
[ENA]
¢þ
>WENV181285754
OFGT01011676
[OFGT] soil metagenome; Clay
233
319
+
Leu
CAA
[ENA]
¢þ
>WENV181285782
OFGT01016716
[OFGT] soil metagenome; Clay
234
308
+
Gln
TTG
[ENA]
¢þ
>WENV181285726
OFGT01005755
[OFGT] soil metagenome; Clay
237
311
+
Phe
GAA
[ENA]
¢þ
>WENV181285778
OFGT01015605
[OFGT] soil metagenome; Clay
238
162
-
Pro
GGG
[ENA]
¢þ
>WENV181285779
OFGT01015942
[OFGT] soil metagenome; Clay
241
325
+
Leu
CAG
[ENA]
¢þ
>WENV181285769
OFGT01013889
[OFGT] soil metagenome; Clay
246
323
+
Glu
TTC
[ENA]
¢þ
>WENV181285677
OFGT01000357
[OFGT] soil metagenome; Clay
260
185
-
Trp
CCA
[ENA]
¢þ
>WENV181285671
OFGT01000185
[OFGT] soil metagenome; Clay
270
342
+
Gly
TCC
[ENA]
¢þ
>WENV181285733
OFGT01007015
[OFGT] soil metagenome; Clay
271
354
+
Leu
TAG
[ENA]
¢þ
>WENV181285763
OFGT01013031
[OFGT] soil metagenome; Clay
273
198
-
Ala
GGC
[ENA]
¢þ
>WENV181285708
OFGT01003517
[OFGT] soil metagenome; Clay
275
353
+
Ile
TAT
[ENA]
¢þ
>WENV181285728
OFGT01006039
[OFGT] soil metagenome; Clay
277
204
-
Asn
GTT
[ENA]
¢þ
>WENV181285680
OFGT01000841
[OFGT] soil metagenome; Clay
287
213
-
Asp
GTC
[ENA]
¢þ
>WENV181285706
OFGT01003058
[OFGT] soil metagenome; Clay
303
218
-
Leu
CAA
[ENA]
¢þ
>WENV181285734
OFGT01007120
[OFGT] soil metagenome; Clay
304
380
+
Arg
CCT
[ENA]
¢þ
>WENV181285766
OFGT01013538
[OFGT] soil metagenome; Clay
304
396
+
Ser
GCT
[ENA]
¢þ
>WENV181285767
OFGT01013682
[OFGT] soil metagenome; Clay
312
236
-
Ile2
CAT
[ENA]
¢þ
>WENV181285736
OFGT01007524
[OFGT] soil metagenome; Clay
325
251
-
Trp
CCA
[ENA]
¢þ
>WENV181285765
OFGT01013208
[OFGT] soil metagenome; Clay
326
241
-
Leu
TAG
[ENA]
¢þ
>WENV181285716
OFGT01004323
[OFGT] soil metagenome; Clay
330
404
+
Glu
CTC
[ENA]
¢þ
>WENV181285758
OFGT01012140
[OFGT] soil metagenome; Clay
335
408
+
Cys
GCA
[ENA]
¢þ
>WENV181285762
OFGT01013031
[OFGT] soil metagenome; Clay
351
277
-
Cys
GCA
[ENA]
¢þ
>WENV181285723
OFGT01005502
[OFGT] soil metagenome; Clay
351
425
+
Val
TAC
[ENA]
¢þ
>WENV181285753
OFGT01011536
[OFGT] soil metagenome; Clay
355
281
-
Asn
GTT
[ENA]
¢þ
>WENV181285750
OFGT01010830
[OFGT] soil metagenome; Clay
363
437
+
Asn
GTT
[ENA]
¢þ
>WENV181285738
OFGT01007762
[OFGT] soil metagenome; Clay
366
279
-
Leu
TAG
[ENA]
¢þ
>WENV181285757
OFGT01012131
[OFGT] soil metagenome; Clay
368
292
-
Thr
CGT
[ENA]
¢þ
>WENV181285724
OFGT01005744
[OFGT] soil metagenome; Clay
370
454
+
Leu
CAA
[ENA]
¢þ
>WENV181285721
OFGT01005011
[OFGT] soil metagenome; Clay
397
321
-
Arg
ACG
[ENA]
¢þ
>WENV181285696
OFGT01002072
[OFGT] soil metagenome; Clay
408
332
-
Pro
CGG
[ENA]
¢þ
>WENV181285709
OFGT01003517
[OFGT] soil metagenome; Clay
408
480
+
Lys
TTT
[ENA]
¢þ
>WENV181285742
OFGT01009800
[OFGT] soil metagenome; Clay
413
489
+
Val
GAC
[ENA]
¢þ
>WENV181285702
OFGT01002457
[OFGT] soil metagenome; Clay
418
345
-
Gly
TCC
[ENA]
¢þ
>WENV181285732
OFGT01006530
[OFGT] soil metagenome; Clay
444
518
+
His
GTG
[ENA]
¢þ
>WENV181285768
OFGT01013786
[OFGT] soil metagenome; Clay
450
523
+
Asn
GTT
[ENA]
¢þ
>WENV181285687
OFGT01001626
[OFGT] soil metagenome; Clay
454
378
-
Arg
ACG
[ENA]
¢þ
>WENV181285759
OFGT01012433
[OFGT] soil metagenome; Clay
455
366
-
Ser
CGA
[ENA]
¢þ
>WENV181285772
OFGT01014192
[OFGT] soil metagenome; Clay
455
527
+
Thr
TGT
[ENA]
¢þ
>WENV181285720
OFGT01004662
[OFGT] soil metagenome; Clay
460
387
-
Glu
CTC
[ENA]
¢þ
>WENV181285681
OFGT01001045
[OFGT] soil metagenome; Clay
468
559
+
Ser
TGA
[ENA]
¢þ
>WENV181285744
OFGT01010089
[OFGT] soil metagenome; Clay
470
379
-
Ser
GCT
[ENA]
¢þ
>WENV181285741
OFGT01008253
[OFGT] soil metagenome; Clay
479
402
-
Arg
CCG
[ENA]
¢þ
>WENV181285745
OFGT01010306
[OFGT] soil metagenome; Clay
488
413
-
Thr
TGT
[ENA]
¢þ
>WENV181285718
OFGT01004529
[OFGT] soil metagenome; Clay
491
402
-
Ser
TGA
[ENA]
¢þ
>WENV181285729
OFGT01006161
[OFGT] soil metagenome; Clay
498
574
+
Pro
TGG
[ENA]
¢þ
>WENV181285749
OFGT01010713
[OFGT] soil metagenome; Clay
500
574
+
Ile
GAT
[ENA]
¢þ
>WENV181285780
OFGT01016335
[OFGT] soil metagenome; Clay
504
432
-
Gly
CCC
[ENA]
¢þ
>WENV181285710
OFGT01003517
[OFGT] soil metagenome; Clay
514
589
+
Arg
TCT
[ENA]
¢þ
>WENV181285693
OFGT01001804
[OFGT] soil metagenome; Clay
521
604
+
Ser
GCT
[ENA]
¢þ
>WENV181285678
OFGT01000410
[OFGT] soil metagenome; Clay
522
450
-
Ala
CGC
[ENA]
¢þ
>WENV181285682
OFGT01001103
[OFGT] soil metagenome; Clay
552
627
+
Ala
GGC
[ENA]
¢þ
>WENV181285722
OFGT01005137
[OFGT] soil metagenome; Clay
563
637
+
Arg
CCG
[ENA]
¢þ
>WENV181285701
OFGT01002457
[OFGT] soil metagenome; Clay
566
482
-
Tyr
GTA
[ENA]
¢þ
>WENV181285703
OFGT01002479
[OFGT] soil metagenome; Clay
569
476
-
SeC
TCA
[ENA]
¢þ
>WENV181285727
OFGT01005765
[OFGT] soil metagenome; Clay
575
502
-
Gln
CTG
[ENA]
¢þ
>WENV181285740
OFGT01008240
[OFGT] soil metagenome; Clay
577
487
-
Ser
GGA
[ENA]
¢þ
>WENV181285669
OFGT01000139
[OFGT] soil metagenome; Clay
590
662
+
Arg
CCG
[ENA]
¢þ
>WENV181285711
OFGT01003517
[OFGT] soil metagenome; Clay
599
672
+
Glu
CTC
[ENA]
¢þ
>WENV181285686
OFGT01001562
[OFGT] soil metagenome; Clay
609
519
-
Ser
GCT
[ENA]
¢þ
>WENV181285735
OFGT01007234
[OFGT] soil metagenome; Clay
616
527
-
Ser
GGA
[ENA]
¢þ
>WENV181285697
OFGT01002090
[OFGT] soil metagenome; Clay
633
705
+
Glu
CTC
[ENA]
¢þ
>WENV181285683
OFGT01001103
[OFGT] soil metagenome; Clay
647
722
+
Glu
TTC
[ENA]
¢þ
>WENV181285688
OFGT01001644
[OFGT] soil metagenome; Clay
651
724
+
Gly
GCC
[ENA]
¢þ
>WENV181285713
OFGT01003816
[OFGT] soil metagenome; Clay
700
625
-
Arg
CCT
[ENA]
¢þ
>WENV181285700
OFGT01002457
[OFGT] soil metagenome; Clay
709
634
-
Thr
TGT
[ENA]
¢þ
>WENV181285714
OFGT01004098
[OFGT] soil metagenome; Clay
734
810
+
Arg
TCG
[ENA]
¢þ
>WENV181285694
OFGT01001825
[OFGT] soil metagenome; Clay
771
696
-
Met
CAT
[ENA]
¢þ
>WENV181285712
OFGT01003517
[OFGT] soil metagenome; Clay
772
846
+
Asn
GTT
[ENA]
¢þ
>WENV181285675
OFGT01000294
[OFGT] soil metagenome; Clay
774
686
-
Leu
CAG
[ENA]
¢þ
>WENV181285698
OFGT01002160
[OFGT] soil metagenome; Clay
782
854
+
Gln
CTG
[ENA]
¢þ
>WENV181285689
OFGT01001644
[OFGT] soil metagenome; Clay
809
881
+
Cys
GCA
[ENA]
¢þ
>WENV181285690
OFGT01001644
[OFGT] soil metagenome; Clay
884
956
+
Val
GAC
[ENA]
¢þ
>WENV181285695
OFGT01001945
[OFGT] soil metagenome; Clay
889
980
+
Ser
GCT
[ENA]
¢þ
>WENV181285699
OFGT01002163
[OFGT] soil metagenome; Clay
912
996
+
Ser
CGA
[ENA]
¢þ
>WENV181285691
OFGT01001703
[OFGT] soil metagenome; Clay
960
884
-
Pro
GGG
[ENA]
¢þ
>WENV181285692
OFGT01001742
[OFGT] soil metagenome; Clay
1035
959
-
fMet
CAT
[ENA]
¢þ
>WENV181285684
OFGT01001221
[OFGT] soil metagenome; Clay
1059
983
-
Arg
TCT
[ENA]
¢þ
>WENV181285679
OFGT01000619
[OFGT] soil metagenome; Clay
1079
1005
-
Pro
CGG
[ENA]
¢þ
>WENV181285667
OFGT01000079
[OFGT] soil metagenome; Clay
1346
1272
-
Pro
GGG
[ENA]
¢þ
>WENV181285668
OFGT01000092
[OFGT] soil metagenome; Clay
1452
1523
+
Gly
GCC
[ENA]
¢þ
>WENV181285672
OFGT01000221
[OFGT] soil metagenome; Clay
1524
1451
-
Ala
TGC
[ENA]
¢þ
>WENV181285674
OFGT01000247
[OFGT] soil metagenome; Clay
1644
1569
-
Ala
TGC
[ENA]
¢þ
>WENV181285673
OFGT01000247
[OFGT] soil metagenome; Clay
1727
1651
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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