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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFHC] soil metagenome; Clay
HIT:
92 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181291705
OFHC01004599
[OFHC] soil metagenome; Clay
45
117
+
Asn
GTT
[ENA]
¢þ
>WENV181291720
OFHC01007440
[OFHC] soil metagenome; Clay
48
123
+
Val
GAC
[ENA]
¢þ
>WENV181291704
OFHC01004399
[OFHC] soil metagenome; Clay
55
129
+
Pro
TGG
[ENA]
¢þ
>WENV181291667
OFHC01000679
[OFHC] soil metagenome; Clay
88
160
+
Ala
TGC
[ENA]
¢þ
>WENV181291661
OFHC01000357
[OFHC] soil metagenome; Clay
90
166
+
Ile
GAT
[ENA]
¢þ
>WENV181291676
OFHC01001160
[OFHC] soil metagenome; Clay
104
180
+
fMet
CAT
[ENA]
¢þ
>WENV181291733
OFHC01009749
[OFHC] soil metagenome; Clay
106
179
+
Val
TAC
[ENA]
¢þ
>WENV181291718
OFHC01007085
[OFHC] soil metagenome; Clay
111
195
+
Leu
CAG
[ENA]
¢þ
>WENV181291722
OFHC01007801
[OFHC] soil metagenome; Clay
149
74
-
Thr
CGT
[ENA]
¢þ
>WENV181291717
OFHC01007018
[OFHC] soil metagenome; Clay
178
249
+
Met
CAT
[ENA]
¢þ
>WENV181291727
OFHC01008872
[OFHC] soil metagenome; Clay
181
258
+
Pro
GGG
[ENA]
¢þ
>WENV181291723
OFHC01007893
[OFHC] soil metagenome; Clay
185
112
-
Gln
CTG
[ENA]
¢þ
>WENV181291710
OFHC01005694
[OFHC] soil metagenome; Clay
203
288
+
Tyr
GTA
[ENA]
¢þ
>WENV181291726
OFHC01008303
[OFHC] soil metagenome; Clay
212
125
-
Ser
GGA
[ENA]
¢þ
>WENV181291684
OFHC01001440
[OFHC] soil metagenome; Clay
228
317
+
Ser
CGA
[ENA]
¢þ
>WENV181291670
OFHC01000766
[OFHC] soil metagenome; Clay
229
155
-
Gln
CTG
[ENA]
¢þ
>WENV181291730
OFHC01008930
[OFHC] soil metagenome; Clay
234
305
+
Cys
GCA
[ENA]
¢þ
>WENV181291708
OFHC01005606
[OFHC] soil metagenome; Clay
238
312
+
Thr
GGT
[ENA]
¢þ
>WENV181291716
OFHC01006847
[OFHC] soil metagenome; Clay
243
167
-
Pro
CGG
[ENA]
¢þ
>WENV181291719
OFHC01007317
[OFHC] soil metagenome; Clay
249
324
+
Ala
GGC
[ENA]
¢þ
>WENV181291728
OFHC01008881
[OFHC] soil metagenome; Clay
257
332
+
Trp
CCA
[ENA]
¢þ
>WENV181291731
OFHC01009029
[OFHC] soil metagenome; Clay
262
336
+
Thr
CGT
[ENA]
¢þ
>WENV181291680
OFHC01001283
[OFHC] soil metagenome; Clay
263
189
-
Thr
GGT
[ENA]
¢þ
>WENV181291690
OFHC01001904
[OFHC] soil metagenome; Clay
267
358
+
Ser
CGA
[ENA]
¢þ
>WENV181291698
OFHC01002838
[OFHC] soil metagenome; Clay
270
199
-
Cys
GCA
[ENA]
¢þ
>WENV181291679
OFHC01001278
[OFHC] soil metagenome; Clay
270
344
+
Met
CAT
[ENA]
¢þ
>WENV181291696
OFHC01002681
[OFHC] soil metagenome; Clay
277
353
+
Ile
GAT
[ENA]
¢þ
>WENV181291713
OFHC01005952
[OFHC] soil metagenome; Clay
282
207
-
Ile2
CAT
[ENA]
¢þ
>WENV181291714
OFHC01006563
[OFHC] soil metagenome; Clay
291
366
+
Lys
CTT
[ENA]
¢þ
>WENV181291715
OFHC01006629
[OFHC] soil metagenome; Clay
297
373
+
Ala
CGC
[ENA]
¢þ
>WENV181291724
OFHC01008112
[OFHC] soil metagenome; Clay
301
226
-
Asn
GTT
[ENA]
¢þ
>WENV181291725
OFHC01008303
[OFHC] soil metagenome; Clay
312
227
-
Ser
CGA
[ENA]
¢þ
>WENV181291686
OFHC01001608
[OFHC] soil metagenome; Clay
318
236
-
Ser
GCT
[ENA]
¢þ
>WENV181291711
OFHC01005694
[OFHC] soil metagenome; Clay
329
402
+
Gly
TCC
[ENA]
¢þ
>WENV181291707
OFHC01005477
[OFHC] soil metagenome; Clay
329
403
+
Pro
CGG
[ENA]
¢þ
>WENV181291709
OFHC01005606
[OFHC] soil metagenome; Clay
329
403
+
Gly
TCC
[ENA]
¢þ
>WENV181291678
OFHC01001221
[OFHC] soil metagenome; Clay
331
260
-
Gly
TCC
[ENA]
¢þ
>WENV181291669
OFHC01000740
[OFHC] soil metagenome; Clay
342
270
-
Phe
GAA
[ENA]
¢þ
>WENV181291729
OFHC01008881
[OFHC] soil metagenome; Clay
346
432
+
Leu
GAG
[ENA]
¢þ
>WENV181291697
OFHC01002681
[OFHC] soil metagenome; Clay
371
446
+
Ala
TGC
[ENA]
¢þ
>WENV181291683
OFHC01001364
[OFHC] soil metagenome; Clay
374
299
-
Arg
TCT
[ENA]
¢þ
>WENV181291682
OFHC01001330
[OFHC] soil metagenome; Clay
378
453
+
Lys
CTT
[ENA]
¢þ
>WENV181291701
OFHC01003450
[OFHC] soil metagenome; Clay
379
305
-
Ile2
CAT
[ENA]
¢þ
>WENV181291732
OFHC01009108
[OFHC] soil metagenome; Clay
381
305
-
Pro
TGG
[ENA]
¢þ
>WENV181291721
OFHC01007506
[OFHC] soil metagenome; Clay
411
337
-
Arg
GCG
[ENA]
¢þ
>WENV181291712
OFHC01005705
[OFHC] soil metagenome; Clay
437
512
+
Ala
CGC
[ENA]
¢þ
>WENV181291699
OFHC01002873
[OFHC] soil metagenome; Clay
478
394
-
Leu
GAG
[ENA]
¢þ
>WENV181291643
OFHC01000026
[OFHC] soil metagenome; Clay
503
575
+
Asp
GTC
[ENA]
¢þ
>WENV181291648
OFHC01000127
[OFHC] soil metagenome; Clay
507
578
+
Ala
GGC
[ENA]
¢þ
>WENV181291655
OFHC01000303
[OFHC] soil metagenome; Clay
518
434
-
Ser
GGA
[ENA]
¢þ
>WENV181291653
OFHC01000254
[OFHC] soil metagenome; Clay
532
458
-
fMet
CAT
[ENA]
¢þ
>WENV181291703
OFHC01004149
[OFHC] soil metagenome; Clay
534
609
+
Thr
TGT
[ENA]
¢þ
>WENV181291706
OFHC01005455
[OFHC] soil metagenome; Clay
561
491
-
Pro
TGG
[ENA]
¢þ
>WENV181291702
OFHC01003794
[OFHC] soil metagenome; Clay
563
636
+
Val
TAC
[ENA]
¢þ
>WENV181291691
OFHC01001963
[OFHC] soil metagenome; Clay
568
483
-
Leu
CAA
[ENA]
¢þ
>WENV181291668
OFHC01000725
[OFHC] soil metagenome; Clay
581
493
-
Leu
CAG
[ENA]
¢þ
>WENV181291671
OFHC01001030
[OFHC] soil metagenome; Clay
584
668
+
Tyr
GTA
[ENA]
¢þ
>WENV181291692
OFHC01002064
[OFHC] soil metagenome; Clay
587
662
+
His
GTG
[ENA]
¢þ
>WENV181291700
OFHC01003191
[OFHC] soil metagenome; Clay
588
515
-
Arg
CCG
[ENA]
¢þ
>WENV181291689
OFHC01001820
[OFHC] soil metagenome; Clay
612
687
+
Trp
CCA
[ENA]
¢þ
>WENV181291651
OFHC01000194
[OFHC] soil metagenome; Clay
619
534
-
Leu
GAG
[ENA]
¢þ
>WENV181291659
OFHC01000339
[OFHC] soil metagenome; Clay
642
558
-
Leu
CAG
[ENA]
¢þ
>WENV181291663
OFHC01000542
[OFHC] soil metagenome; Clay
645
573
-
Val
CAC
[ENA]
¢þ
>WENV181291694
OFHC01002177
[OFHC] soil metagenome; Clay
646
718
+
Phe
GAA
[ENA]
¢þ
>WENV181291649
OFHC01000158
[OFHC] soil metagenome; Clay
656
584
-
Pro
GGG
[ENA]
¢þ
>WENV181291665
OFHC01000561
[OFHC] soil metagenome; Clay
668
743
+
Met
CAT
[ENA]
¢þ
>WENV181291672
OFHC01001030
[OFHC] soil metagenome; Clay
701
774
+
Gly
TCC
[ENA]
¢þ
>WENV181291695
OFHC01002652
[OFHC] soil metagenome; Clay
704
629
-
Arg
TCG
[ENA]
¢þ
>WENV181291693
OFHC01002064
[OFHC] soil metagenome; Clay
737
812
+
Lys
CTT
[ENA]
¢þ
>WENV181291685
OFHC01001534
[OFHC] soil metagenome; Clay
771
855
+
Leu
TAA
[ENA]
¢þ
>WENV181291687
OFHC01001697
[OFHC] soil metagenome; Clay
776
702
-
Met
CAT
[ENA]
¢þ
>WENV181291673
OFHC01001030
[OFHC] soil metagenome; Clay
796
869
+
Thr
GGT
[ENA]
¢þ
>WENV181291688
OFHC01001749
[OFHC] soil metagenome; Clay
807
736
-
Ala
TGC
[ENA]
¢þ
>WENV181291664
OFHC01000556
[OFHC] soil metagenome; Clay
849
775
-
Lys
CTT
[ENA]
¢þ
>WENV181291677
OFHC01001189
[OFHC] soil metagenome; Clay
860
934
+
Gly
GCC
[ENA]
¢þ
>WENV181291674
OFHC01001030
[OFHC] soil metagenome; Clay
882
953
+
Glu
TTC
[ENA]
¢þ
>WENV181291660
OFHC01000348
[OFHC] soil metagenome; Clay
975
1059
+
Leu
CAA
[ENA]
¢þ
>WENV181291675
OFHC01001030
[OFHC] soil metagenome; Clay
991
1066
+
Gly
GCC
[ENA]
¢þ
>WENV181291681
OFHC01001288
[OFHC] soil metagenome; Clay
1010
924
-
Leu
TAA
[ENA]
¢þ
>WENV181291656
OFHC01000309
[OFHC] soil metagenome; Clay
1058
1132
+
Arg
TCG
[ENA]
¢þ
>WENV181291666
OFHC01000623
[OFHC] soil metagenome; Clay
1091
1017
-
Glu
CTC
[ENA]
¢þ
>WENV181291652
OFHC01000201
[OFHC] soil metagenome; Clay
1129
1204
+
Lys
TTT
[ENA]
¢þ
>WENV181291654
OFHC01000303
[OFHC] soil metagenome; Clay
1198
1115
-
Ser
CGA
[ENA]
¢þ
>WENV181291658
OFHC01000325
[OFHC] soil metagenome; Clay
1369
1450
+
Ser
GCT
[ENA]
¢þ
>WENV181291647
OFHC01000126
[OFHC] soil metagenome; Clay
1506
1577
+
Arg
CCG
[ENA]
¢þ
>WENV181291657
OFHC01000315
[OFHC] soil metagenome; Clay
1614
1687
+
Arg
GCG
[ENA]
¢þ
>WENV181291662
OFHC01000447
[OFHC] soil metagenome; Clay
1688
1760
+
Pro
GGG
[ENA]
¢þ
>WENV181291646
OFHC01000058
[OFHC] soil metagenome; Clay
1711
1639
-
His
GTG
[ENA]
¢þ
>WENV181291650
OFHC01000180
[OFHC] soil metagenome; Clay
1787
1858
+
Cys
GCA
[ENA]
¢þ
>WENV181291644
OFHC01000035
[OFHC] soil metagenome; Clay
2061
1989
-
Gln
TTG
[ENA]
¢þ
>WENV181291645
OFHC01000041
[OFHC] soil metagenome; Clay
2581
2501
-
Ser
TGA
[ENA]
¢þ
>WENV181291642
OFHC01000008
[OFHC] soil metagenome; Clay
6940
6868
-
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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