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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OFHQ] coral metagenome; NA
HIT:
160 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181303835
OFHQ01146404
[OFHQ] coral metagenome; NA
2
76
+
Thr
CGT
[ENA]
¢þ
>WENV181303805
OFHQ01070007
[OFHQ] coral metagenome; NA
7
79
+
Val
TAC
[ENA]
¢þ
>WENV181303830
OFHQ01131135
[OFHQ] coral metagenome; NA
8
80
+
Glu
TTC
[ENA]
¢þ
>WENV181303834
OFHQ01143959
[OFHQ] coral metagenome; NA
42
117
+
Thr
TGT
[ENA]
¢þ
>WENV181303748
OFHQ01020126
[OFHQ] coral metagenome; NA
74
-1
-
Thr
TGT
[ENA]
¢þ
>WENV181303814
OFHQ01099548
[OFHQ] coral metagenome; NA
74
2
-
Pro
CGG
[ENA]
¢þ
>WENV181303826
OFHQ01126027
[OFHQ] coral metagenome; NA
84
156
+
Val
TAC
[ENA]
¢þ
>WENV181303773
OFHQ01034270
[OFHQ] coral metagenome; NA
99
15
-
Ser
GCT
[ENA]
¢þ
>WENV181303828
OFHQ01126411
[OFHQ] coral metagenome; NA
109
196
+
Met
CAT
[ENA]
¢þ
>WENV181303699
OFHQ01003647
[OFHQ] coral metagenome; NA
134
59
-
Thr
AGT
[ENA]
¢þ
>WENV181303839
OFHQ01155473
[OFHQ] coral metagenome; NA
134
205
+
Pro
TGG
[ENA]
¢þ
>WENV181303811
OFHQ01085454
[OFHQ] coral metagenome; NA
163
234
+
Glu
CTC
[ENA]
¢þ
>WENV181303841
OFHQ01166257
[OFHQ] coral metagenome; NA
171
255
+
Ser
GCT
[ENA]
¢þ
>WENV181303803
OFHQ01062330
[OFHQ] coral metagenome; NA
176
259
+
Ser
TGA
[ENA]
¢þ
>WENV181303809
OFHQ01080368
[OFHQ] coral metagenome; NA
190
117
-
Arg
ACG
[ENA]
¢þ
>WENV181303741
OFHQ01018711
[OFHQ] coral metagenome; NA
202
130
-
Lys
TTT
[ENA]
¢þ
>WENV181303842
OFHQ01171720
[OFHQ] coral metagenome; NA
265
192
-
His
GTG
[ENA]
¢þ
>WENV181303789
OFHQ01045574
[OFHQ] coral metagenome; NA
272
346
+
Thr
AGT
[ENA]
¢þ
>WENV181303714
OFHQ01007442
[OFHQ] coral metagenome; NA
279
350
+
Glu
TTC
[ENA]
¢þ
>WENV181303825
OFHQ01125861
[OFHQ] coral metagenome; NA
283
364
+
Ser
CGA
[ENA]
¢þ
>WENV181303784
OFHQ01040686
[OFHQ] coral metagenome; NA
286
213
-
Lys
CTT
[ENA]
¢þ
>WENV181303822
OFHQ01122463
[OFHQ] coral metagenome; NA
293
367
+
Met
CAT
[ENA]
¢þ
>WENV181303824
OFHQ01124996
[OFHQ] coral metagenome; NA
297
226
-
Asp
GTC
[ENA]
¢þ
>WENV181303768
OFHQ01032051
[OFHQ] coral metagenome; NA
321
251
-
Gly
GCC
[ENA]
¢þ
>WENV181303833
OFHQ01143098
[OFHQ] coral metagenome; NA
341
268
-
Arg
TCT
[ENA]
¢þ
>WENV181303724
OFHQ01011049
[OFHQ] coral metagenome; NA
346
420
+
Thr
TGT
[ENA]
¢þ
>WENV181303781
OFHQ01038073
[OFHQ] coral metagenome; NA
381
452
+
Sup
TTA
[ENA]
¢þ
>WENV181303752
OFHQ01021670
[OFHQ] coral metagenome; NA
382
309
-
Arg
TCG
[ENA]
¢þ
>WENV181303838
OFHQ01154752
[OFHQ] coral metagenome; NA
382
310
-
Pro
CGG
[ENA]
¢þ
>WENV181303692
OFHQ01001918
[OFHQ] coral metagenome; NA
387
310
-
Ser
AGA
[ENA]
¢þ
>WENV181303739
OFHQ01016264
[OFHQ] coral metagenome; NA
387
462
+
Val
TAC
[ENA]
¢þ
>WENV181303743
OFHQ01019306
[OFHQ] coral metagenome; NA
399
472
+
Lys
CTT
[ENA]
¢þ
>WENV181303733
OFHQ01013559
[OFHQ] coral metagenome; NA
404
333
-
Asp
GTC
[ENA]
¢þ
>WENV181303823
OFHQ01123067
[OFHQ] coral metagenome; NA
405
486
+
Ser
CGA
[ENA]
¢þ
>WENV181303777
OFHQ01036225
[OFHQ] coral metagenome; NA
407
479
+
Arg
TCG
[ENA]
¢þ
>WENV181303815
OFHQ01104233
[OFHQ] coral metagenome; NA
427
355
-
Trp
CCA
[ENA]
¢þ
>WENV181303836
OFHQ01150507
[OFHQ] coral metagenome; NA
436
352
-
Ser
GCT
[ENA]
¢þ
>WENV181303698
OFHQ01003107
[OFHQ] coral metagenome; NA
440
521
+
Ser
AGA
[ENA]
¢þ
>WENV181303745
OFHQ01019407
[OFHQ] coral metagenome; NA
463
391
-
Arg
TCG
[ENA]
¢þ
>WENV181303829
OFHQ01128918
[OFHQ] coral metagenome; NA
468
384
-
Leu
CAG
[ENA]
¢þ
>WENV181303684
OFHQ01000217
[OFHQ] coral metagenome; NA
480
399
-
Leu
AAG
[ENA]
¢þ
>WENV181303831
OFHQ01135113
[OFHQ] coral metagenome; NA
485
558
+
Glu
CTC
[ENA]
¢þ
>WENV181303812
OFHQ01091616
[OFHQ] coral metagenome; NA
496
424
-
Ile
GAT
[ENA]
¢þ
>WENV181303766
OFHQ01031404
[OFHQ] coral metagenome; NA
508
580
+
Cys
GCA
[ENA]
¢þ
>WENV181303837
OFHQ01152615
[OFHQ] coral metagenome; NA
529
601
+
Pro
CGG
[ENA]
¢þ
>WENV181303779
OFHQ01036679
[OFHQ] coral metagenome; NA
548
476
-
Arg
ACG
[ENA]
¢þ
>WENV181303819
OFHQ01109704
[OFHQ] coral metagenome; NA
548
621
+
Arg
TCG
[ENA]
¢þ
>WENV181303840
OFHQ01159803
[OFHQ] coral metagenome; NA
557
484
-
His
GTG
[ENA]
¢þ
>WENV181303770
OFHQ01033424
[OFHQ] coral metagenome; NA
564
490
-
Thr
GGT
[ENA]
¢þ
>WENV181303704
OFHQ01005045
[OFHQ] coral metagenome; NA
571
643
+
Glu
TTC
[ENA]
¢þ
>WENV181303742
OFHQ01018793
[OFHQ] coral metagenome; NA
580
507
-
Thr
CGT
[ENA]
¢þ
>WENV181303756
OFHQ01023638
[OFHQ] coral metagenome; NA
587
661
+
His
GTG
[ENA]
¢þ
>WENV181303816
OFHQ01105744
[OFHQ] coral metagenome; NA
593
667
+
Thr
AGT
[ENA]
¢þ
>WENV181303759
OFHQ01028513
[OFHQ] coral metagenome; NA
600
681
+
Leu
AAG
[ENA]
¢þ
>WENV181303806
OFHQ01071341
[OFHQ] coral metagenome; NA
603
528
-
Thr
GGT
[ENA]
¢þ
>WENV181303764
OFHQ01030615
[OFHQ] coral metagenome; NA
603
675
+
Val
CAC
[ENA]
¢þ
>WENV181303800
OFHQ01057061
[OFHQ] coral metagenome; NA
622
696
+
Arg
ACG
[ENA]
¢þ
>WENV181303832
OFHQ01142058
[OFHQ] coral metagenome; NA
637
566
-
Asp
GTC
[ENA]
¢þ
>WENV181303797
OFHQ01053917
[OFHQ] coral metagenome; NA
640
710
+
Gly
GCC
[ENA]
¢þ
>WENV181303786
OFHQ01041827
[OFHQ] coral metagenome; NA
644
569
-
Lys
CTT
[ENA]
¢þ
>WENV181303785
OFHQ01041170
[OFHQ] coral metagenome; NA
644
717
+
Arg
CCT
[ENA]
¢þ
>WENV181303827
OFHQ01126185
[OFHQ] coral metagenome; NA
653
727
+
Lys
CTT
[ENA]
¢þ
>WENV181303788
OFHQ01043248
[OFHQ] coral metagenome; NA
675
748
+
Arg
TCT
[ENA]
¢þ
>WENV181303808
OFHQ01078992
[OFHQ] coral metagenome; NA
682
611
-
Asp
GTC
[ENA]
¢þ
>WENV181303820
OFHQ01110687
[OFHQ] coral metagenome; NA
692
766
+
Thr
GGT
[ENA]
¢þ
>WENV181303802
OFHQ01060516
[OFHQ] coral metagenome; NA
700
617
-
Leu
AAG
[ENA]
¢þ
>WENV181303778
OFHQ01036625
[OFHQ] coral metagenome; NA
704
785
+
Leu
AAG
[ENA]
¢þ
>WENV181303817
OFHQ01107402
[OFHQ] coral metagenome; NA
714
631
-
Leu
TAG
[ENA]
¢þ
>WENV181303729
OFHQ01013545
[OFHQ] coral metagenome; NA
722
650
-
Thr
GGT
[ENA]
¢þ
>WENV181303793
OFHQ01051162
[OFHQ] coral metagenome; NA
726
644
-
Leu
TAG
[ENA]
¢þ
>WENV181303790
OFHQ01046193
[OFHQ] coral metagenome; NA
745
820
+
Cys
GCA
[ENA]
¢þ
>WENV181303796
OFHQ01052330
[OFHQ] coral metagenome; NA
746
821
+
Arg
TCT
[ENA]
¢þ
>WENV181303794
OFHQ01051351
[OFHQ] coral metagenome; NA
754
670
-
Ser
GCT
[ENA]
¢þ
>WENV181303795
OFHQ01052142
[OFHQ] coral metagenome; NA
762
691
-
Pro
AGG
[ENA]
¢þ
>WENV181303763
OFHQ01029534
[OFHQ] coral metagenome; NA
763
689
-
Lys
TTT
[ENA]
¢þ
>WENV181303767
OFHQ01031921
[OFHQ] coral metagenome; NA
764
680
-
Ser
GCT
[ENA]
¢þ
>WENV181303821
OFHQ01114757
[OFHQ] coral metagenome; NA
771
697
-
Arg
ACG
[ENA]
¢þ
>WENV181303774
OFHQ01034970
[OFHQ] coral metagenome; NA
771
697
-
Thr
TGT
[ENA]
¢þ
>WENV181303771
OFHQ01033497
[OFHQ] coral metagenome; NA
772
699
-
Gln
TTG
[ENA]
¢þ
>WENV181303792
OFHQ01050888
[OFHQ] coral metagenome; NA
775
702
-
Arg
TCT
[ENA]
¢þ
>WENV181303717
OFHQ01007898
[OFHQ] coral metagenome; NA
778
850
+
Glu
CTC
[ENA]
¢þ
>WENV181303757
OFHQ01024661
[OFHQ] coral metagenome; NA
779
853
+
His
ATG
[ENA]
¢þ
>WENV181303801
OFHQ01060189
[OFHQ] coral metagenome; NA
780
854
+
Asn
GTT
[ENA]
¢þ
>WENV181303730
OFHQ01013559
[OFHQ] coral metagenome; NA
804
878
+
Asn
GTT
[ENA]
¢þ
>WENV181303694
OFHQ01002198
[OFHQ] coral metagenome; NA
805
734
-
Pro
AGG
[ENA]
¢þ
>WENV181303755
OFHQ01023431
[OFHQ] coral metagenome; NA
815
887
+
Thr
GGT
[ENA]
¢þ
>WENV181303818
OFHQ01109296
[OFHQ] coral metagenome; NA
820
748
-
Trp
CCA
[ENA]
¢þ
>WENV181303807
OFHQ01078992
[OFHQ] coral metagenome; NA
834
905
+
His
GTG
[ENA]
¢þ
>WENV181303772
OFHQ01034015
[OFHQ] coral metagenome; NA
850
767
-
Leu
CAG
[ENA]
¢þ
>WENV181303736
OFHQ01014851
[OFHQ] coral metagenome; NA
879
951
+
Val
CAC
[ENA]
¢þ
>WENV181303722
OFHQ01009950
[OFHQ] coral metagenome; NA
879
954
+
Val
TAC
[ENA]
¢þ
>WENV181303750
OFHQ01020976
[OFHQ] coral metagenome; NA
904
987
+
Leu
TAA
[ENA]
¢þ
>WENV181303813
OFHQ01091808
[OFHQ] coral metagenome; NA
933
847
-
Met
CAT
[ENA]
¢þ
>WENV181303721
OFHQ01009840
[OFHQ] coral metagenome; NA
952
1025
+
His
GTG
[ENA]
¢þ
>WENV181303787
OFHQ01042589
[OFHQ] coral metagenome; NA
961
888
-
Thr
CGT
[ENA]
¢þ
>WENV181303761
OFHQ01028941
[OFHQ] coral metagenome; NA
974
1048
+
Arg
ACG
[ENA]
¢þ
>WENV181303737
OFHQ01015222
[OFHQ] coral metagenome; NA
987
913
-
Arg
TCT
[ENA]
¢þ
>WENV181303783
OFHQ01039405
[OFHQ] coral metagenome; NA
995
912
-
Leu
CAG
[ENA]
¢þ
>WENV181303810
OFHQ01081828
[OFHQ] coral metagenome; NA
1019
937
-
Ser
TGA
[ENA]
¢þ
>WENV181303769
OFHQ01032434
[OFHQ] coral metagenome; NA
1032
949
-
Leu
CAG
[ENA]
¢þ
>WENV181303747
OFHQ01020126
[OFHQ] coral metagenome; NA
1045
971
-
Thr
CGT
[ENA]
¢þ
>WENV181303749
OFHQ01020352
[OFHQ] coral metagenome; NA
1074
1146
+
Thr
CGT
[ENA]
¢þ
>WENV181303713
OFHQ01007429
[OFHQ] coral metagenome; NA
1088
1168
+
Ser
GCT
[ENA]
¢þ
>WENV181303726
OFHQ01011863
[OFHQ] coral metagenome; NA
1120
1048
-
Val
CAC
[ENA]
¢þ
>WENV181303791
OFHQ01049267
[OFHQ] coral metagenome; NA
1132
1059
-
Met
CAT
[ENA]
¢þ
>WENV181303782
OFHQ01038534
[OFHQ] coral metagenome; NA
1148
1221
+
Arg
TCT
[ENA]
¢þ
>WENV181303798
OFHQ01053917
[OFHQ] coral metagenome; NA
1152
1222
+
Gly
GCC
[ENA]
¢þ
>WENV181303804
OFHQ01066311
[OFHQ] coral metagenome; NA
1178
1106
-
Gly
CCC
[ENA]
¢þ
>WENV181303775
OFHQ01035276
[OFHQ] coral metagenome; NA
1181
1107
-
Met
CAT
[ENA]
¢þ
>WENV181303708
OFHQ01005988
[OFHQ] coral metagenome; NA
1201
1127
-
His
GTG
[ENA]
¢þ
>WENV181303728
OFHQ01013193
[OFHQ] coral metagenome; NA
1236
1317
+
Ser
CGA
[ENA]
¢þ
>WENV181303780
OFHQ01037124
[OFHQ] coral metagenome; NA
1241
1168
-
Lys
CTT
[ENA]
¢þ
>WENV181303751
OFHQ01021073
[OFHQ] coral metagenome; NA
1247
1319
+
Val
TAC
[ENA]
¢þ
>WENV181303799
OFHQ01056472
[OFHQ] coral metagenome; NA
1249
1176
-
Thr
GGT
[ENA]
¢þ
>WENV181303711
OFHQ01006826
[OFHQ] coral metagenome; NA
1314
1388
+
Arg
TCG
[ENA]
¢þ
>WENV181303762
OFHQ01029388
[OFHQ] coral metagenome; NA
1347
1275
-
Thr
GGT
[ENA]
¢þ
>WENV181303685
OFHQ01000233
[OFHQ] coral metagenome; NA
1348
1421
+
Ile
GAT
[ENA]
¢þ
>WENV181303776
OFHQ01035640
[OFHQ] coral metagenome; NA
1354
1427
+
Arg
TCT
[ENA]
¢þ
>WENV181303738
OFHQ01016185
[OFHQ] coral metagenome; NA
1417
1346
-
Met
CAT
[ENA]
¢þ
>WENV181303734
OFHQ01013580
[OFHQ] coral metagenome; NA
1436
1353
-
Leu
TAG
[ENA]
¢þ
>WENV181303758
OFHQ01027175
[OFHQ] coral metagenome; NA
1466
1394
-
Thr
GGT
[ENA]
¢þ
>WENV181303723
OFHQ01010240
[OFHQ] coral metagenome; NA
1476
1559
+
Leu
TAG
[ENA]
¢þ
>WENV181303744
OFHQ01019362
[OFHQ] coral metagenome; NA
1533
1617
+
Ser
GCT
[ENA]
¢þ
>WENV181303754
OFHQ01022430
[OFHQ] coral metagenome; NA
1575
1492
-
Leu
TAA
[ENA]
¢þ
>WENV181303687
OFHQ01001112
[OFHQ] coral metagenome; NA
1577
1505
-
Met
CAT
[ENA]
¢þ
>WENV181303740
OFHQ01018081
[OFHQ] coral metagenome; NA
1590
1663
+
Arg
TCG
[ENA]
¢þ
>WENV181303709
OFHQ01006541
[OFHQ] coral metagenome; NA
1598
1673
+
Thr
AGT
[ENA]
¢þ
>WENV181303706
OFHQ01005580
[OFHQ] coral metagenome; NA
1605
1679
+
Val
AAC
[ENA]
¢þ
>WENV181303760
OFHQ01028513
[OFHQ] coral metagenome; NA
1652
1735
+
Leu
TAG
[ENA]
¢þ
>WENV181303765
OFHQ01031252
[OFHQ] coral metagenome; NA
1671
1743
+
Glu
TTC
[ENA]
¢þ
>WENV181303707
OFHQ01005752
[OFHQ] coral metagenome; NA
1685
1610
-
Thr
AGT
[ENA]
¢þ
>WENV181303746
OFHQ01019500
[OFHQ] coral metagenome; NA
1797
1713
-
Ser
TGA
[ENA]
¢þ
>WENV181303703
OFHQ01004723
[OFHQ] coral metagenome; NA
1951
1875
-
Thr
GGT
[ENA]
¢þ
>WENV181303702
OFHQ01004303
[OFHQ] coral metagenome; NA
1969
1896
-
Asn
GTT
[ENA]
¢þ
>WENV181303731
OFHQ01013559
[OFHQ] coral metagenome; NA
1990
2062
+
Val
AAC
[ENA]
¢þ
>WENV181303727
OFHQ01012977
[OFHQ] coral metagenome; NA
2041
2114
+
Gln
TTG
[ENA]
¢þ
>WENV181303693
OFHQ01002198
[OFHQ] coral metagenome; NA
2060
2132
+
Val
CAC
[ENA]
¢þ
>WENV181303735
OFHQ01014823
[OFHQ] coral metagenome; NA
2145
2216
+
Pro
TGG
[ENA]
¢þ
>WENV181303720
OFHQ01008713
[OFHQ] coral metagenome; NA
2181
2098
-
Leu
TAG
[ENA]
¢þ
>WENV181303712
OFHQ01007281
[OFHQ] coral metagenome; NA
2223
2296
+
Lys
CTT
[ENA]
¢þ
>WENV181303753
OFHQ01022292
[OFHQ] coral metagenome; NA
2224
2153
-
His
GTG
[ENA]
¢þ
>WENV181303732
OFHQ01013559
[OFHQ] coral metagenome; NA
2441
2516
+
Thr
AGT
[ENA]
¢þ
>WENV181303700
OFHQ01004026
[OFHQ] coral metagenome; NA
2501
2429
-
Glu
TTC
[ENA]
¢þ
>WENV181303701
OFHQ01004237
[OFHQ] coral metagenome; NA
2548
2631
+
Leu
AAG
[ENA]
¢þ
>WENV181303715
OFHQ01007442
[OFHQ] coral metagenome; NA
2628
2556
-
Pro
CGG
[ENA]
¢þ
>WENV181303710
OFHQ01006541
[OFHQ] coral metagenome; NA
2696
2768
+
Val
CAC
[ENA]
¢þ
>WENV181303719
OFHQ01007918
[OFHQ] coral metagenome; NA
2740
2812
+
Val
CAC
[ENA]
¢þ
>WENV181303686
OFHQ01000958
[OFHQ] coral metagenome; NA
2870
2957
+
Met
CAT
[ENA]
¢þ
>WENV181303725
OFHQ01011863
[OFHQ] coral metagenome; NA
2916
2987
+
Pro
TGG
[ENA]
¢þ
>WENV181303716
OFHQ01007648
[OFHQ] coral metagenome; NA
3078
3159
+
Leu
CAG
[ENA]
¢þ
>WENV181303718
OFHQ01007911
[OFHQ] coral metagenome; NA
3153
3081
-
Thr
GGT
[ENA]
¢þ
>WENV181303705
OFHQ01005166
[OFHQ] coral metagenome; NA
3235
3151
-
Ser
GCT
[ENA]
¢þ
>WENV181303696
OFHQ01003077
[OFHQ] coral metagenome; NA
3582
3653
+
Trp
CCA
[ENA]
¢þ
>WENV181303690
OFHQ01001784
[OFHQ] coral metagenome; NA
3917
4000
+
Leu
CAG
[ENA]
¢þ
>WENV181303689
OFHQ01001763
[OFHQ] coral metagenome; NA
4229
4301
+
Thr
TGT
[ENA]
¢þ
>WENV181303697
OFHQ01003077
[OFHQ] coral metagenome; NA
4310
4382
+
Trp
CCA
[ENA]
¢þ
>WENV181303691
OFHQ01001784
[OFHQ] coral metagenome; NA
4663
4746
+
Leu
AAG
[ENA]
¢þ
>WENV181303688
OFHQ01001343
[OFHQ] coral metagenome; NA
4725
4795
+
Gly
GCC
[ENA]
¢þ
>WENV181303695
OFHQ01002492
[OFHQ] coral metagenome; NA
5384
5312
-
Glu
CTC
[ENA]
¢þ
>WENV181303683
OFHQ01000010
[OFHQ] coral metagenome; NA
17435
17509
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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