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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFIA] marine metagenome; seawater
HIT:
161 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181304592
OFIA01007957
[OFIA] marine metagenome; seawater
9
83
+
Ile2
CAT
[ENA]
¢þ
>WENV181304601
OFIA01008583
[OFIA] marine metagenome; seawater
29
104
+
Arg
GCG
[ENA]
¢þ
>WENV181304584
OFIA01006765
[OFIA] marine metagenome; seawater
33
109
+
Ile2
CAT
[ENA]
¢þ
>WENV181304589
OFIA01007444
[OFIA] marine metagenome; seawater
34
110
+
Met
CAT
[ENA]
¢þ
>WENV181304634
OFIA01012860
[OFIA] marine metagenome; seawater
46
122
+
Arg
ACG
[ENA]
¢þ
>WENV181304560
OFIA01004097
[OFIA] marine metagenome; seawater
49
125
+
Ile
GAT
[ENA]
¢þ
>WENV181304545
OFIA01003016
[OFIA] marine metagenome; seawater
67
156
+
Ser
GGA
[ENA]
¢þ
>WENV181304593
OFIA01007967
[OFIA] marine metagenome; seawater
75
148
+
Asp
GTC
[ENA]
¢þ
>WENV181304602
OFIA01008624
[OFIA] marine metagenome; seawater
77
149
+
Arg
ACG
[ENA]
¢þ
>WENV181304629
OFIA01011850
[OFIA] marine metagenome; seawater
85
10
-
Asn
GTT
[ENA]
¢þ
>WENV181304621
OFIA01011194
[OFIA] marine metagenome; seawater
91
166
+
Leu
TAA
[ENA]
¢þ
>WENV181304515
OFIA01001327
[OFIA] marine metagenome; seawater
92
165
+
Cys
GCA
[ENA]
¢þ
>WENV181304521
OFIA01001505
[OFIA] marine metagenome; seawater
96
172
+
Met
CAT
[ENA]
¢þ
>WENV181304622
OFIA01011343
[OFIA] marine metagenome; seawater
96
181
+
Tyr
GTA
[ENA]
¢þ
>WENV181304611
OFIA01009458
[OFIA] marine metagenome; seawater
112
37
-
Ala
TGC
[ENA]
¢þ
>WENV181304626
OFIA01011801
[OFIA] marine metagenome; seawater
115
189
+
Thr
GGT
[ENA]
¢þ
>WENV181304512
OFIA01001219
[OFIA] marine metagenome; seawater
116
39
-
Arg
CCG
[ENA]
¢þ
>WENV181304618
OFIA01010794
[OFIA] marine metagenome; seawater
122
37
-
Leu
TAA
[ENA]
¢þ
>WENV181304530
OFIA01002064
[OFIA] marine metagenome; seawater
123
50
-
Gly
TCC
[ENA]
¢þ
>WENV181304605
OFIA01008826
[OFIA] marine metagenome; seawater
126
201
+
Asn
GTT
[ENA]
¢þ
>WENV181304575
OFIA01005770
[OFIA] marine metagenome; seawater
137
213
+
Met
CAT
[ENA]
¢þ
>WENV181304577
OFIA01006048
[OFIA] marine metagenome; seawater
139
225
+
Leu
CAG
[ENA]
¢þ
>WENV181304595
OFIA01008321
[OFIA] marine metagenome; seawater
142
66
-
Arg
TCT
[ENA]
¢þ
>WENV181304603
OFIA01008624
[OFIA] marine metagenome; seawater
151
222
+
His
GTG
[ENA]
¢þ
>WENV181304541
OFIA01002468
[OFIA] marine metagenome; seawater
152
70
-
Leu
TAG
[ENA]
¢þ
>WENV181304502
OFIA01000546
[OFIA] marine metagenome; seawater
157
232
+
His
GTG
[ENA]
¢þ
>WENV181304580
OFIA01006275
[OFIA] marine metagenome; seawater
164
88
-
Cys
GCA
[ENA]
¢þ
>WENV181304596
OFIA01008330
[OFIA] marine metagenome; seawater
164
250
+
Leu
GAG
[ENA]
¢þ
>WENV181304548
OFIA01003060
[OFIA] marine metagenome; seawater
169
83
-
Leu
TAA
[ENA]
¢þ
>WENV181304627
OFIA01011816
[OFIA] marine metagenome; seawater
169
244
+
Thr
TGT
[ENA]
¢þ
>WENV181304625
OFIA01011516
[OFIA] marine metagenome; seawater
172
96
-
Pro
GGG
[ENA]
¢þ
>WENV181304552
OFIA01003524
[OFIA] marine metagenome; seawater
177
263
+
Leu
CAG
[ENA]
¢þ
>WENV181304610
OFIA01009396
[OFIA] marine metagenome; seawater
180
91
-
Ser
TGA
[ENA]
¢þ
>WENV181304516
OFIA01001327
[OFIA] marine metagenome; seawater
181
267
+
Leu
TAA
[ENA]
¢þ
>WENV181304561
OFIA01004097
[OFIA] marine metagenome; seawater
183
258
+
Ala
TGC
[ENA]
¢þ
>WENV181304567
OFIA01004660
[OFIA] marine metagenome; seawater
185
259
+
Asn
GTT
[ENA]
¢þ
>WENV181304505
OFIA01000584
[OFIA] marine metagenome; seawater
187
114
-
Pro
GGG
[ENA]
¢þ
>WENV181304632
OFIA01012665
[OFIA] marine metagenome; seawater
192
267
+
Arg
TCT
[ENA]
¢þ
>WENV181304623
OFIA01011343
[OFIA] marine metagenome; seawater
193
266
+
Gly
TCC
[ENA]
¢þ
>WENV181304588
OFIA01007305
[OFIA] marine metagenome; seawater
194
107
-
Ser
TGA
[ENA]
¢þ
>WENV181304558
OFIA01004057
[OFIA] marine metagenome; seawater
200
275
+
Trp
CCA
[ENA]
¢þ
>WENV181304628
OFIA01011850
[OFIA] marine metagenome; seawater
204
131
-
Cys
GCA
[ENA]
¢þ
>WENV181304585
OFIA01006803
[OFIA] marine metagenome; seawater
207
132
-
Ala
TGC
[ENA]
¢þ
>WENV181304604
OFIA01008624
[OFIA] marine metagenome; seawater
223
297
+
Val
TAC
[ENA]
¢þ
>WENV181304574
OFIA01005678
[OFIA] marine metagenome; seawater
224
147
-
Met
CAT
[ENA]
¢þ
>WENV181304609
OFIA01009177
[OFIA] marine metagenome; seawater
225
153
-
Arg
ACG
[ENA]
¢þ
>WENV181304612
OFIA01009665
[OFIA] marine metagenome; seawater
225
300
+
Lys
TTT
[ENA]
¢þ
>WENV181304534
OFIA01002416
[OFIA] marine metagenome; seawater
231
306
+
Val
TAC
[ENA]
¢þ
>WENV181304631
OFIA01012366
[OFIA] marine metagenome; seawater
235
311
+
Asp
GTC
[ENA]
¢þ
>WENV181304525
OFIA01001910
[OFIA] marine metagenome; seawater
245
170
-
Gly
TCC
[ENA]
¢þ
>WENV181304520
OFIA01001426
[OFIA] marine metagenome; seawater
246
321
+
Trp
CCA
[ENA]
¢þ
>WENV181304547
OFIA01003060
[OFIA] marine metagenome; seawater
248
176
-
Cys
GCA
[ENA]
¢þ
>WENV181304591
OFIA01007870
[OFIA] marine metagenome; seawater
257
342
+
Ser
TGA
[ENA]
¢þ
>WENV181304540
OFIA01002468
[OFIA] marine metagenome; seawater
260
186
-
Ile
TAT
[ENA]
¢þ
>WENV181304572
OFIA01005233
[OFIA] marine metagenome; seawater
262
186
-
Asp
GTC
[ENA]
¢þ
>WENV181304578
OFIA01006121
[OFIA] marine metagenome; seawater
268
193
-
Thr
TGT
[ENA]
¢þ
>WENV181304482
OFIA01000103
[OFIA] marine metagenome; seawater
278
364
+
Leu
CAA
[ENA]
¢þ
>WENV181304599
OFIA01008566
[OFIA] marine metagenome; seawater
279
195
-
Leu
TAG
[ENA]
¢þ
>WENV181304566
OFIA01004578
[OFIA] marine metagenome; seawater
279
352
+
Thr
CGT
[ENA]
¢þ
>WENV181304503
OFIA01000546
[OFIA] marine metagenome; seawater
289
365
+
Arg
TCG
[ENA]
¢þ
>WENV181304624
OFIA01011343
[OFIA] marine metagenome; seawater
293
365
+
Thr
GGT
[ENA]
¢þ
>WENV181304598
OFIA01008504
[OFIA] marine metagenome; seawater
295
384
+
Ser
GGA
[ENA]
¢þ
>WENV181304573
OFIA01005398
[OFIA] marine metagenome; seawater
298
373
+
Lys
CTT
[ENA]
¢þ
>WENV181304559
OFIA01004057
[OFIA] marine metagenome; seawater
300
389
+
Ser
TGA
[ENA]
¢þ
>WENV181304533
OFIA01002414
[OFIA] marine metagenome; seawater
301
225
-
Pro
TGG
[ENA]
¢þ
>WENV181304590
OFIA01007689
[OFIA] marine metagenome; seawater
307
231
-
Val
TAC
[ENA]
¢þ
>WENV181304583
OFIA01006664
[OFIA] marine metagenome; seawater
311
235
-
Arg
TCT
[ENA]
¢þ
>WENV181304531
OFIA01002169
[OFIA] marine metagenome; seawater
313
237
-
Arg
CCT
[ENA]
¢þ
>WENV181304543
OFIA01002679
[OFIA] marine metagenome; seawater
315
388
+
Arg
TCT
[ENA]
¢þ
>WENV181304556
OFIA01003874
[OFIA] marine metagenome; seawater
316
243
-
Lys
CTT
[ENA]
¢þ
>WENV181304529
OFIA01002064
[OFIA] marine metagenome; seawater
319
235
-
Tyr
GTA
[ENA]
¢þ
>WENV181304535
OFIA01002416
[OFIA] marine metagenome; seawater
322
398
+
Asp
GTC
[ENA]
¢þ
>WENV181304551
OFIA01003429
[OFIA] marine metagenome; seawater
325
249
-
Glu
TTC
[ENA]
¢þ
>WENV181304615
OFIA01010535
[OFIA] marine metagenome; seawater
337
412
+
Gly
GCC
[ENA]
¢þ
>WENV181304581
OFIA01006467
[OFIA] marine metagenome; seawater
344
257
-
Leu
TAA
[ENA]
¢þ
>WENV181304607
OFIA01008963
[OFIA] marine metagenome; seawater
345
418
+
Gly
GCC
[ENA]
¢þ
>WENV181304542
OFIA01002469
[OFIA] marine metagenome; seawater
347
419
+
Trp
CCA
[ENA]
¢þ
>WENV181304546
OFIA01003060
[OFIA] marine metagenome; seawater
349
276
-
Gly
GCC
[ENA]
¢þ
>WENV181304571
OFIA01005233
[OFIA] marine metagenome; seawater
350
275
-
Val
TAC
[ENA]
¢þ
>WENV181304555
OFIA01003808
[OFIA] marine metagenome; seawater
351
427
+
Arg
ACG
[ENA]
¢þ
>WENV181304539
OFIA01002468
[OFIA] marine metagenome; seawater
356
284
-
Met
CAT
[ENA]
¢þ
>WENV181304554
OFIA01003721
[OFIA] marine metagenome; seawater
356
431
+
Lys
TTT
[ENA]
¢þ
>WENV181304635
OFIA01013189
[OFIA] marine metagenome; seawater
363
439
+
Pro
TGG
[ENA]
¢þ
>WENV181304608
OFIA01009177
[OFIA] marine metagenome; seawater
379
300
-
Leu
AAG
[ENA]
¢þ
>WENV181304633
OFIA01012827
[OFIA] marine metagenome; seawater
380
456
+
Arg
TCT
[ENA]
¢þ
>WENV181304617
OFIA01010794
[OFIA] marine metagenome; seawater
381
305
-
Cys
GCA
[ENA]
¢þ
>WENV181304600
OFIA01008572
[OFIA] marine metagenome; seawater
388
313
-
Ile2
CAT
[ENA]
¢þ
>WENV181304613
OFIA01010191
[OFIA] marine metagenome; seawater
391
466
+
Ala
CGC
[ENA]
¢þ
>WENV181304594
OFIA01008088
[OFIA] marine metagenome; seawater
392
466
+
Thr
GGT
[ENA]
¢þ
>WENV181304586
OFIA01006865
[OFIA] marine metagenome; seawater
402
478
+
Pro
GGG
[ENA]
¢þ
>WENV181304614
OFIA01010433
[OFIA] marine metagenome; seawater
421
340
-
Ser
AGA
[ENA]
¢þ
>WENV181304630
OFIA01012082
[OFIA] marine metagenome; seawater
422
347
-
Trp
CCA
[ENA]
¢þ
>WENV181304597
OFIA01008391
[OFIA] marine metagenome; seawater
426
352
-
Gln
TTG
[ENA]
¢þ
>WENV181304568
OFIA01004711
[OFIA] marine metagenome; seawater
434
505
+
Asp
GTC
[ENA]
¢þ
>WENV181304587
OFIA01007190
[OFIA] marine metagenome; seawater
436
510
+
fMet
CAT
[ENA]
¢þ
>WENV181304538
OFIA01002468
[OFIA] marine metagenome; seawater
437
366
-
Gly
GCC
[ENA]
¢þ
>WENV181304501
OFIA01000526
[OFIA] marine metagenome; seawater
438
349
-
Ser
GCT
[ENA]
¢þ
>WENV181304620
OFIA01011156
[OFIA] marine metagenome; seawater
452
376
-
Pro
CGG
[ENA]
¢þ
>WENV181304483
OFIA01000103
[OFIA] marine metagenome; seawater
457
533
+
Pro
TGG
[ENA]
¢þ
>WENV181304563
OFIA01004366
[OFIA] marine metagenome; seawater
458
534
+
Glu
TTC
[ENA]
¢þ
>WENV181304606
OFIA01008900
[OFIA] marine metagenome; seawater
461
390
-
Gly
TCC
[ENA]
¢þ
>WENV181304550
OFIA01003367
[OFIA] marine metagenome; seawater
467
541
+
Asn
GTT
[ENA]
¢þ
>WENV181304510
OFIA01001027
[OFIA] marine metagenome; seawater
480
404
-
fMet
CAT
[ENA]
¢þ
>WENV181304619
OFIA01010857
[OFIA] marine metagenome; seawater
481
394
-
Ser
GGA
[ENA]
¢þ
>WENV181304570
OFIA01004990
[OFIA] marine metagenome; seawater
489
415
-
Gln
TTG
[ENA]
¢þ
>WENV181304616
OFIA01010794
[OFIA] marine metagenome; seawater
497
411
-
Leu
GAG
[ENA]
¢þ
>WENV181304553
OFIA01003566
[OFIA] marine metagenome; seawater
502
425
-
Asp
GTC
[ENA]
¢þ
>WENV181304528
OFIA01002037
[OFIA] marine metagenome; seawater
502
427
-
Thr
GGT
[ENA]
¢þ
>WENV181304582
OFIA01006565
[OFIA] marine metagenome; seawater
505
581
+
Pro
TGG
[ENA]
¢þ
>WENV181304576
OFIA01005775
[OFIA] marine metagenome; seawater
535
609
+
Gln
TTG
[ENA]
¢þ
>WENV181304562
OFIA01004306
[OFIA] marine metagenome; seawater
554
479
-
Pro
TGG
[ENA]
¢þ
>WENV181304500
OFIA01000501
[OFIA] marine metagenome; seawater
554
630
+
Arg
TCT
[ENA]
¢þ
>WENV181304523
OFIA01001519
[OFIA] marine metagenome; seawater
582
507
-
Val
TAC
[ENA]
¢þ
>WENV181304565
OFIA01004368
[OFIA] marine metagenome; seawater
587
504
-
Ser
GCT
[ENA]
¢þ
>WENV181304537
OFIA01002468
[OFIA] marine metagenome; seawater
588
516
-
Pro
CGG
[ENA]
¢þ
>WENV181304579
OFIA01006259
[OFIA] marine metagenome; seawater
590
503
-
Ser
GGA
[ENA]
¢þ
>WENV181304527
OFIA01002037
[OFIA] marine metagenome; seawater
591
518
-
Gly
TCC
[ENA]
¢þ
>WENV181304549
OFIA01003135
[OFIA] marine metagenome; seawater
597
510
-
Leu
TAG
[ENA]
¢þ
>WENV181304509
OFIA01001027
[OFIA] marine metagenome; seawater
615
529
-
Leu
GAG
[ENA]
¢þ
>WENV181304557
OFIA01003901
[OFIA] marine metagenome; seawater
624
699
+
Phe
GAA
[ENA]
¢þ
>WENV181304519
OFIA01001359
[OFIA] marine metagenome; seawater
625
550
-
Thr
GGT
[ENA]
¢þ
>WENV181304569
OFIA01004711
[OFIA] marine metagenome; seawater
640
567
-
Ile
AAT
[ENA]
¢þ
>WENV181304564
OFIA01004368
[OFIA] marine metagenome; seawater
674
601
-
Gln
CTG
[ENA]
¢þ
>WENV181304511
OFIA01001038
[OFIA] marine metagenome; seawater
705
628
-
Asp
GTC
[ENA]
¢þ
>WENV181304496
OFIA01000422
[OFIA] marine metagenome; seawater
708
633
-
Trp
CCA
[ENA]
¢þ
>WENV181304518
OFIA01001359
[OFIA] marine metagenome; seawater
711
638
-
Gly
TCC
[ENA]
¢þ
>WENV181304526
OFIA01002037
[OFIA] marine metagenome; seawater
723
639
-
Tyr
GTA
[ENA]
¢þ
>WENV181304544
OFIA01002930
[OFIA] marine metagenome; seawater
778
702
-
Met
CAT
[ENA]
¢þ
>WENV181304536
OFIA01002468
[OFIA] marine metagenome; seawater
780
705
-
Arg
ACG
[ENA]
¢þ
>WENV181304524
OFIA01001901
[OFIA] marine metagenome; seawater
784
711
-
Ala
GGC
[ENA]
¢þ
>WENV181304532
OFIA01002202
[OFIA] marine metagenome; seawater
796
722
-
Ile2
CAT
[ENA]
¢þ
>WENV181304522
OFIA01001517
[OFIA] marine metagenome; seawater
887
813
-
Thr
TGT
[ENA]
¢þ
>WENV181304491
OFIA01000394
[OFIA] marine metagenome; seawater
919
844
-
Ala
TGC
[ENA]
¢þ
>WENV181304514
OFIA01001239
[OFIA] marine metagenome; seawater
969
893
-
Met
CAT
[ENA]
¢þ
>WENV181304513
OFIA01001220
[OFIA] marine metagenome; seawater
992
917
-
Arg
TCT
[ENA]
¢þ
>WENV181304495
OFIA01000422
[OFIA] marine metagenome; seawater
998
924
-
Thr
GGT
[ENA]
¢þ
>WENV181304517
OFIA01001359
[OFIA] marine metagenome; seawater
1015
931
-
Tyr
GTA
[ENA]
¢þ
>WENV181304497
OFIA01000444
[OFIA] marine metagenome; seawater
1078
1152
+
Gln
TTG
[ENA]
¢þ
>WENV181304508
OFIA01000947
[OFIA] marine metagenome; seawater
1083
1009
-
Glu
CTC
[ENA]
¢þ
>WENV181304494
OFIA01000422
[OFIA] marine metagenome; seawater
1117
1033
-
Tyr
GTA
[ENA]
¢þ
>WENV181304488
OFIA01000284
[OFIA] marine metagenome; seawater
1135
1210
+
Gly
TCC
[ENA]
¢þ
>WENV181304493
OFIA01000422
[OFIA] marine metagenome; seawater
1197
1122
-
Thr
TGT
[ENA]
¢þ
>WENV181304489
OFIA01000284
[OFIA] marine metagenome; seawater
1241
1317
+
fMet
CAT
[ENA]
¢þ
>WENV181304504
OFIA01000578
[OFIA] marine metagenome; seawater
1258
1172
-
Leu
GAG
[ENA]
¢þ
>WENV181304506
OFIA01000831
[OFIA] marine metagenome; seawater
1264
1178
-
Leu
CAG
[ENA]
¢þ
>WENV181304507
OFIA01000842
[OFIA] marine metagenome; seawater
1427
1352
-
Thr
GGT
[ENA]
¢þ
>WENV181304498
OFIA01000481
[OFIA] marine metagenome; seawater
1427
1503
+
Pro
CGG
[ENA]
¢þ
>WENV181304499
OFIA01000489
[OFIA] marine metagenome; seawater
1569
1494
-
Lys
TTT
[ENA]
¢þ
>WENV181304485
OFIA01000156
[OFIA] marine metagenome; seawater
1690
1766
+
Arg
GCG
[ENA]
¢þ
>WENV181304490
OFIA01000286
[OFIA] marine metagenome; seawater
2042
2118
+
Arg
CCG
[ENA]
¢þ
>WENV181304492
OFIA01000412
[OFIA] marine metagenome; seawater
2055
1980
-
Asn
GTT
[ENA]
¢þ
>WENV181304486
OFIA01000211
[OFIA] marine metagenome; seawater
3044
3119
+
Arg
CCT
[ENA]
¢þ
>WENV181304487
OFIA01000269
[OFIA] marine metagenome; seawater
3091
3167
+
Ile2
CAT
[ENA]
¢þ
>WENV181304484
OFIA01000135
[OFIA] marine metagenome; seawater
3871
3953
+
Leu
TAG
[ENA]
¢þ
>WENV181304479
OFIA01000060
[OFIA] marine metagenome; seawater
5769
5845
+
Pro
GGG
[ENA]
¢þ
>WENV181304480
OFIA01000070
[OFIA] marine metagenome; seawater
6345
6420
+
Glu
TTC
[ENA]
¢þ
>WENV181304481
OFIA01000070
[OFIA] marine metagenome; seawater
6539
6614
+
Ala
GGC
[ENA]
¢þ
>WENV181304478
OFIA01000024
[OFIA] marine metagenome; seawater
6713
6802
+
Ser
TGA
[ENA]
¢þ
>WENV181304476
OFIA01000014
[OFIA] marine metagenome; seawater
7394
7471
+
Ile
GAT
[ENA]
¢þ
>WENV181304477
OFIA01000014
[OFIA] marine metagenome; seawater
7480
7555
+
Ala
TGC
[ENA]
¢þ
>WENV181304475
OFIA01000001
[OFIA] marine metagenome; seawater
25808
25896
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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