This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFIE] marine metagenome; sea ice
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181304948
OFIE01001520
[OFIE] marine metagenome; sea ice
5
79
+
Trp
CCA
[ENA]
¢þ
>WENV181304958
OFIE01002344
[OFIE] marine metagenome; sea ice
22
95
+
Gly
GCC
[ENA]
¢þ
>WENV181304959
OFIE01002416
[OFIE] marine metagenome; sea ice
50
124
+
Glu
CTC
[ENA]
¢þ
>WENV181304991
OFIE01012374
[OFIE] marine metagenome; sea ice
64
135
+
Gly
GCC
[ENA]
¢þ
>WENV181304986
OFIE01009382
[OFIE] marine metagenome; sea ice
105
29
-
Asp
GTC
[ENA]
¢þ
>WENV181304936
OFIE01000802
[OFIE] marine metagenome; sea ice
118
45
-
Gln
TTG
[ENA]
¢þ
>WENV181304984
OFIE01009241
[OFIE] marine metagenome; sea ice
124
210
+
Ile2
CAT
[ENA]
¢þ
>WENV181304970
OFIE01004645
[OFIE] marine metagenome; sea ice
140
215
+
Gly
GCC
[ENA]
¢þ
>WENV181304944
OFIE01001186
[OFIE] marine metagenome; sea ice
145
72
-
Val
TAC
[ENA]
¢þ
>WENV181304955
OFIE01001907
[OFIE] marine metagenome; sea ice
155
229
+
His
GTG
[ENA]
¢þ
>WENV181304969
OFIE01004539
[OFIE] marine metagenome; sea ice
191
107
-
Leu
GAG
[ENA]
¢þ
>WENV181304985
OFIE01009382
[OFIE] marine metagenome; sea ice
196
121
-
Val
TAC
[ENA]
¢þ
>WENV181304966
OFIE01004016
[OFIE] marine metagenome; sea ice
197
270
+
Ala
AGC
[ENA]
¢þ
>WENV181304929
OFIE01000491
[OFIE] marine metagenome; sea ice
208
280
+
Cys
GCA
[ENA]
¢þ
>WENV181304996
OFIE01014014
[OFIE] marine metagenome; sea ice
211
293
+
Leu
AAG
[ENA]
¢þ
>WENV181304992
OFIE01012374
[OFIE] marine metagenome; sea ice
213
285
+
Pro
AGG
[ENA]
¢þ
>WENV181304987
OFIE01010336
[OFIE] marine metagenome; sea ice
227
151
-
Trp
CCA
[ENA]
¢þ
>WENV181304952
OFIE01001520
[OFIE] marine metagenome; sea ice
255
183
-
Glu
TTC
[ENA]
¢þ
>WENV181304990
OFIE01011711
[OFIE] marine metagenome; sea ice
256
172
-
Ser
TGA
[ENA]
¢þ
>WENV181304971
OFIE01004645
[OFIE] marine metagenome; sea ice
258
331
+
Cys
GCA
[ENA]
¢þ
>WENV181304983
OFIE01008980
[OFIE] marine metagenome; sea ice
265
190
-
Phe
GAA
[ENA]
¢þ
>WENV181304960
OFIE01002424
[OFIE] marine metagenome; sea ice
268
357
+
Ser
GGA
[ENA]
¢þ
>WENV181304994
OFIE01012990
[OFIE] marine metagenome; sea ice
273
187
-
Ser
GCT
[ENA]
¢þ
>WENV181304961
OFIE01002496
[OFIE] marine metagenome; sea ice
275
346
+
Gln
CTG
[ENA]
¢þ
>WENV181304979
OFIE01007542
[OFIE] marine metagenome; sea ice
277
203
-
Val
AAC
[ENA]
¢þ
>WENV181304968
OFIE01004407
[OFIE] marine metagenome; sea ice
290
366
+
Gln
TTG
[ENA]
¢þ
>WENV181304963
OFIE01003265
[OFIE] marine metagenome; sea ice
292
364
+
Glu
TTC
[ENA]
¢þ
>WENV181304995
OFIE01013635
[OFIE] marine metagenome; sea ice
299
374
+
Trp
CCA
[ENA]
¢þ
>WENV181304988
OFIE01010573
[OFIE] marine metagenome; sea ice
306
380
+
Met
CAT
[ENA]
¢þ
>WENV181304930
OFIE01000491
[OFIE] marine metagenome; sea ice
316
387
+
Pro
AGG
[ENA]
¢þ
>WENV181304949
OFIE01001520
[OFIE] marine metagenome; sea ice
320
392
+
Arg
CCT
[ENA]
¢þ
>WENV181304964
OFIE01003420
[OFIE] marine metagenome; sea ice
328
404
+
Pro
TGG
[ENA]
¢þ
>WENV181304943
OFIE01001186
[OFIE] marine metagenome; sea ice
350
277
-
Thr
AGT
[ENA]
¢þ
>WENV181304975
OFIE01005393
[OFIE] marine metagenome; sea ice
366
452
+
Ser
GGA
[ENA]
¢þ
>WENV181304962
OFIE01002516
[OFIE] marine metagenome; sea ice
382
457
+
Pro
TGG
[ENA]
¢þ
>WENV181304978
OFIE01006290
[OFIE] marine metagenome; sea ice
384
299
-
Ser
TGA
[ENA]
¢þ
>WENV181304982
OFIE01007933
[OFIE] marine metagenome; sea ice
394
323
-
Asp
GTC
[ENA]
¢þ
>WENV181304926
OFIE01000371
[OFIE] marine metagenome; sea ice
402
477
+
fMet
CAT
[ENA]
¢þ
>WENV181304945
OFIE01001290
[OFIE] marine metagenome; sea ice
404
329
-
Ala
TGC
[ENA]
¢þ
>WENV181304967
OFIE01004016
[OFIE] marine metagenome; sea ice
405
477
+
Arg
ACG
[ENA]
¢þ
>WENV181304972
OFIE01004795
[OFIE] marine metagenome; sea ice
408
334
-
Phe
GAA
[ENA]
¢þ
>WENV181304997
OFIE01014255
[OFIE] marine metagenome; sea ice
410
483
+
Met
CAT
[ENA]
¢þ
>WENV181304993
OFIE01012374
[OFIE] marine metagenome; sea ice
418
337
-
Ser
GCT
[ENA]
¢þ
>WENV181304998
OFIE01015569
[OFIE] marine metagenome; sea ice
428
355
-
Met
CAT
[ENA]
¢þ
>WENV181304989
OFIE01011248
[OFIE] marine metagenome; sea ice
434
507
+
Asn
GTT
[ENA]
¢þ
>WENV181304980
OFIE01007703
[OFIE] marine metagenome; sea ice
439
514
+
Val
TAC
[ENA]
¢þ
>WENV181304938
OFIE01001186
[OFIE] marine metagenome; sea ice
452
536
+
Ser
GCT
[ENA]
¢þ
>WENV181304974
OFIE01005299
[OFIE] marine metagenome; sea ice
466
391
-
Glu
TTC
[ENA]
¢þ
>WENV181304977
OFIE01006290
[OFIE] marine metagenome; sea ice
474
399
-
Gly
GCC
[ENA]
¢þ
>WENV181304950
OFIE01001520
[OFIE] marine metagenome; sea ice
494
566
+
Lys
CTT
[ENA]
¢þ
>WENV181304981
OFIE01007703
[OFIE] marine metagenome; sea ice
529
605
+
Asp
GTC
[ENA]
¢þ
>WENV181304957
OFIE01002276
[OFIE] marine metagenome; sea ice
542
468
-
Pro
TGG
[ENA]
¢þ
>WENV181304976
OFIE01005682
[OFIE] marine metagenome; sea ice
554
481
-
Ile
TAT
[ENA]
¢þ
>WENV181304932
OFIE01000491
[OFIE] marine metagenome; sea ice
564
492
-
Arg
CCG
[ENA]
¢þ
>WENV181304939
OFIE01001186
[OFIE] marine metagenome; sea ice
574
646
+
Arg
TCG
[ENA]
¢þ
>WENV181304953
OFIE01001711
[OFIE] marine metagenome; sea ice
579
666
+
Ser
GGA
[ENA]
¢þ
>WENV181304933
OFIE01000718
[OFIE] marine metagenome; sea ice
646
720
+
Asn
GTT
[ENA]
¢þ
>WENV181304956
OFIE01002276
[OFIE] marine metagenome; sea ice
656
575
-
Tyr
GTA
[ENA]
¢þ
>WENV181304973
OFIE01004959
[OFIE] marine metagenome; sea ice
661
587
-
Gly
GCC
[ENA]
¢þ
>WENV181304931
OFIE01000491
[OFIE] marine metagenome; sea ice
669
597
-
Gln
CTG
[ENA]
¢þ
>WENV181304965
OFIE01003715
[OFIE] marine metagenome; sea ice
682
766
+
Leu
CAA
[ENA]
¢þ
>WENV181304954
OFIE01001711
[OFIE] marine metagenome; sea ice
710
786
+
Arg
CCG
[ENA]
¢þ
>WENV181304940
OFIE01001186
[OFIE] marine metagenome; sea ice
730
813
+
Leu
TAG
[ENA]
¢þ
>WENV181304935
OFIE01000718
[OFIE] marine metagenome; sea ice
808
736
-
Ala
TGC
[ENA]
¢þ
>WENV181304934
OFIE01000718
[OFIE] marine metagenome; sea ice
851
933
+
Leu
TAA
[ENA]
¢þ
>WENV181304946
OFIE01001328
[OFIE] marine metagenome; sea ice
855
929
+
Trp
CCA
[ENA]
¢þ
>WENV181304947
OFIE01001373
[OFIE] marine metagenome; sea ice
873
946
+
Gln
TTG
[ENA]
¢þ
>WENV181304951
OFIE01001520
[OFIE] marine metagenome; sea ice
895
814
-
Leu
CAG
[ENA]
¢þ
>WENV181304942
OFIE01001186
[OFIE] marine metagenome; sea ice
932
848
-
Leu
CAG
[ENA]
¢þ
>WENV181304925
OFIE01000369
[OFIE] marine metagenome; sea ice
944
1025
+
Leu
TAG
[ENA]
¢þ
>WENV181304937
OFIE01000826
[OFIE] marine metagenome; sea ice
950
1034
+
Leu
CAA
[ENA]
¢þ
>WENV181304941
OFIE01001186
[OFIE] marine metagenome; sea ice
992
1073
+
Ser
GCT
[ENA]
¢þ
>WENV181304927
OFIE01000371
[OFIE] marine metagenome; sea ice
1021
1108
+
Ser
TGA
[ENA]
¢þ
>WENV181304928
OFIE01000490
[OFIE] marine metagenome; sea ice
1256
1183
-
His
GTG
[ENA]
¢þ
>WENV181304924
OFIE01000278
[OFIE] marine metagenome; sea ice
1361
1431
+
Gly
TCC
[ENA]
¢þ
>WENV181304923
OFIE01000253
[OFIE] marine metagenome; sea ice
1865
1935
+
Cys
GCA
[ENA]
¢þ
>WENV181304922
OFIE01000058
[OFIE] marine metagenome; sea ice
3225
3154
-
Lys
TTT
[ENA]
¢þ
>WENV181304921
OFIE01000020
[OFIE] marine metagenome; sea ice
3833
3758
-
Ala
TGC
[ENA]
¢þ
>WENV181304920
OFIE01000020
[OFIE] marine metagenome; sea ice
3944
3868
-
Ile
GAT
[ENA]
¢þ
>WENV181304919
OFIE01000015
[OFIE] marine metagenome; sea ice
4456
4383
-
Ala
TGC
[ENA]
¢þ
>WENV181304918
OFIE01000015
[OFIE] marine metagenome; sea ice
4532
4459
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK