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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFII] marine metagenome; seawater
HIT:
114 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181305913
OFII01001522
[OFII] marine metagenome; seawater
15
89
+
Gly
CCC
[ENA]
¢þ
>WENV181305982
OFII01010401
[OFII] marine metagenome; seawater
25
99
+
Val
AAC
[ENA]
¢þ
>WENV181305986
OFII01011660
[OFII] marine metagenome; seawater
45
119
+
Val
GAC
[ENA]
¢þ
>WENV181305933
OFII01004040
[OFII] marine metagenome; seawater
58
132
+
Arg
CCG
[ENA]
¢þ
>WENV181305919
OFII01002127
[OFII] marine metagenome; seawater
59
144
+
Leu
TAA
[ENA]
¢þ
>WENV181305985
OFII01011498
[OFII] marine metagenome; seawater
60
135
+
Lys
TTT
[ENA]
¢þ
>WENV181305971
OFII01008564
[OFII] marine metagenome; seawater
78
154
+
Pro
TGG
[ENA]
¢þ
>WENV181305952
OFII01006093
[OFII] marine metagenome; seawater
84
11
-
Ala
GGC
[ENA]
¢þ
>WENV181305964
OFII01007429
[OFII] marine metagenome; seawater
117
26
-
Ser
GCT
[ENA]
¢þ
>WENV181305907
OFII01001166
[OFII] marine metagenome; seawater
117
41
-
Val
GAC
[ENA]
¢þ
>WENV181305960
OFII01006981
[OFII] marine metagenome; seawater
144
70
-
Arg
TCG
[ENA]
¢þ
>WENV181305951
OFII01004959
[OFII] marine metagenome; seawater
155
79
-
fMet
CAT
[ENA]
¢þ
>WENV181305939
OFII01004560
[OFII] marine metagenome; seawater
157
83
-
Gly
GCC
[ENA]
¢þ
>WENV181305978
OFII01009223
[OFII] marine metagenome; seawater
159
232
+
Gly
TCC
[ENA]
¢þ
>WENV181305972
OFII01008564
[OFII] marine metagenome; seawater
160
235
+
Lys
TTT
[ENA]
¢þ
>WENV181305956
OFII01006545
[OFII] marine metagenome; seawater
175
102
-
Ile2
CAT
[ENA]
¢þ
>WENV181305983
OFII01010842
[OFII] marine metagenome; seawater
189
116
-
Asn
GTT
[ENA]
¢þ
>WENV181305922
OFII01002725
[OFII] marine metagenome; seawater
202
125
-
Ile
GAT
[ENA]
¢þ
>WENV181305975
OFII01008822
[OFII] marine metagenome; seawater
203
277
+
fMet
CAT
[ENA]
¢þ
>WENV181305931
OFII01003732
[OFII] marine metagenome; seawater
207
283
+
Ile2
CAT
[ENA]
¢þ
>WENV181305955
OFII01006469
[OFII] marine metagenome; seawater
209
280
+
Gly
CCC
[ENA]
¢þ
>WENV181305980
OFII01009489
[OFII] marine metagenome; seawater
210
136
-
Arg
TCT
[ENA]
¢þ
>WENV181305950
OFII01004959
[OFII] marine metagenome; seawater
259
184
-
Gly
TCC
[ENA]
¢þ
>WENV181305946
OFII01004741
[OFII] marine metagenome; seawater
261
186
-
Met
CAT
[ENA]
¢þ
>WENV181305970
OFII01008467
[OFII] marine metagenome; seawater
263
189
-
Thr
TGT
[ENA]
¢þ
>WENV181305959
OFII01006957
[OFII] marine metagenome; seawater
299
225
-
Gly
TCC
[ENA]
¢þ
>WENV181305969
OFII01008091
[OFII] marine metagenome; seawater
301
226
-
Phe
GAA
[ENA]
¢þ
>WENV181305924
OFII01002863
[OFII] marine metagenome; seawater
305
216
-
Ser
TGA
[ENA]
¢þ
>WENV181305947
OFII01004948
[OFII] marine metagenome; seawater
309
383
+
Val
TAC
[ENA]
¢þ
>WENV181305966
OFII01007904
[OFII] marine metagenome; seawater
309
393
+
Leu
TAA
[ENA]
¢þ
>WENV181305973
OFII01008624
[OFII] marine metagenome; seawater
311
238
-
Gly
GCC
[ENA]
¢þ
>WENV181305934
OFII01004067
[OFII] marine metagenome; seawater
318
391
+
Lys
TTT
[ENA]
¢þ
>WENV181305928
OFII01003256
[OFII] marine metagenome; seawater
320
395
+
Glu
TTC
[ENA]
¢þ
>WENV181305920
OFII01002416
[OFII] marine metagenome; seawater
326
400
+
Arg
CCT
[ENA]
¢þ
>WENV181305976
OFII01008822
[OFII] marine metagenome; seawater
340
423
+
Ser
GCT
[ENA]
¢þ
>WENV181305957
OFII01006557
[OFII] marine metagenome; seawater
346
268
-
Lys
TTT
[ENA]
¢þ
>WENV181305949
OFII01004959
[OFII] marine metagenome; seawater
349
265
-
Tyr
GTA
[ENA]
¢þ
>WENV181305911
OFII01001318
[OFII] marine metagenome; seawater
356
430
+
Lys
TTT
[ENA]
¢þ
>WENV181305987
OFII01012118
[OFII] marine metagenome; seawater
356
439
+
Tyr
GTA
[ENA]
¢þ
>WENV181305945
OFII01004741
[OFII] marine metagenome; seawater
360
284
-
Arg
TCT
[ENA]
¢þ
>WENV181305927
OFII01003200
[OFII] marine metagenome; seawater
360
435
+
Asn
GTT
[ENA]
¢þ
>WENV181305941
OFII01004719
[OFII] marine metagenome; seawater
371
282
-
Ser
TGA
[ENA]
¢þ
>WENV181305958
OFII01006803
[OFII] marine metagenome; seawater
391
316
-
Gly
CCC
[ENA]
¢þ
>WENV181305935
OFII01004236
[OFII] marine metagenome; seawater
393
317
-
Val
CAC
[ENA]
¢þ
>WENV181305974
OFII01008729
[OFII] marine metagenome; seawater
402
327
-
Ala
GGC
[ENA]
¢þ
>WENV181305962
OFII01007193
[OFII] marine metagenome; seawater
406
490
+
Leu
CAG
[ENA]
¢þ
>WENV181305918
OFII01001933
[OFII] marine metagenome; seawater
417
494
+
Glu
TTC
[ENA]
¢þ
>WENV181305968
OFII01008091
[OFII] marine metagenome; seawater
426
351
-
Thr
TGT
[ENA]
¢þ
>WENV181305979
OFII01009223
[OFII] marine metagenome; seawater
432
518
+
Leu
TAA
[ENA]
¢þ
>WENV181305948
OFII01004959
[OFII] marine metagenome; seawater
433
357
-
Thr
TGT
[ENA]
¢þ
>WENV181305961
OFII01007160
[OFII] marine metagenome; seawater
434
358
-
Val
TAC
[ENA]
¢þ
>WENV181305981
OFII01010059
[OFII] marine metagenome; seawater
443
519
+
His
GTG
[ENA]
¢þ
>WENV181305984
OFII01011196
[OFII] marine metagenome; seawater
446
372
-
Ala
CGC
[ENA]
¢þ
>WENV181305977
OFII01008822
[OFII] marine metagenome; seawater
446
531
+
Leu
CAA
[ENA]
¢þ
>WENV181305954
OFII01006155
[OFII] marine metagenome; seawater
468
383
-
Leu
CAG
[ENA]
¢þ
>WENV181305940
OFII01004719
[OFII] marine metagenome; seawater
479
390
-
Ser
GGA
[ENA]
¢þ
>WENV181305963
OFII01007377
[OFII] marine metagenome; seawater
483
557
+
Arg
TCT
[ENA]
¢þ
>WENV181305965
OFII01007711
[OFII] marine metagenome; seawater
494
570
+
Ile
GAT
[ENA]
¢þ
>WENV181305944
OFII01004741
[OFII] marine metagenome; seawater
500
425
-
Lys
TTT
[ENA]
¢þ
>WENV181305930
OFII01003451
[OFII] marine metagenome; seawater
501
576
+
Val
TAC
[ENA]
¢þ
>WENV181305938
OFII01004379
[OFII] marine metagenome; seawater
503
579
+
Asp
GTC
[ENA]
¢þ
>WENV181305932
OFII01003958
[OFII] marine metagenome; seawater
531
621
+
Ser
TGA
[ENA]
¢þ
>WENV181305942
OFII01004726
[OFII] marine metagenome; seawater
539
462
-
Glu
CTC
[ENA]
¢þ
>WENV181305937
OFII01004340
[OFII] marine metagenome; seawater
544
620
+
Ile2
CAT
[ENA]
¢þ
>WENV181305921
OFII01002618
[OFII] marine metagenome; seawater
548
621
+
Asn
GTT
[ENA]
¢þ
>WENV181305880
OFII01000141
[OFII] marine metagenome; seawater
561
485
-
Arg
CCG
[ENA]
¢þ
>WENV181305967
OFII01008091
[OFII] marine metagenome; seawater
565
490
-
Phe
GAA
[ENA]
¢þ
>WENV181305929
OFII01003256
[OFII] marine metagenome; seawater
570
645
+
Glu
TTC
[ENA]
¢þ
>WENV181305926
OFII01003098
[OFII] marine metagenome; seawater
575
486
-
Ser
GGA
[ENA]
¢þ
>WENV181305943
OFII01004741
[OFII] marine metagenome; seawater
582
508
-
Asn
GTT
[ENA]
¢þ
>WENV181305953
OFII01006155
[OFII] marine metagenome; seawater
592
517
-
Val
CAC
[ENA]
¢þ
>WENV181305925
OFII01002897
[OFII] marine metagenome; seawater
615
691
+
Pro
CGG
[ENA]
¢þ
>WENV181305936
OFII01004269
[OFII] marine metagenome; seawater
626
551
-
Phe
GAA
[ENA]
¢þ
>WENV181305917
OFII01001844
[OFII] marine metagenome; seawater
631
556
-
Gln
TTG
[ENA]
¢þ
>WENV181305894
OFII01000461
[OFII] marine metagenome; seawater
643
568
-
Thr
GGT
[ENA]
¢þ
>WENV181305893
OFII01000461
[OFII] marine metagenome; seawater
749
676
-
Gly
TCC
[ENA]
¢þ
>WENV181305879
OFII01000141
[OFII] marine metagenome; seawater
783
707
-
Arg
GCG
[ENA]
¢þ
>WENV181305914
OFII01001533
[OFII] marine metagenome; seawater
815
890
+
Val
TAC
[ENA]
¢þ
>WENV181305901
OFII01001054
[OFII] marine metagenome; seawater
822
738
-
Leu
GAG
[ENA]
¢þ
>WENV181305923
OFII01002836
[OFII] marine metagenome; seawater
837
921
+
Leu
TAG
[ENA]
¢þ
>WENV181305892
OFII01000461
[OFII] marine metagenome; seawater
868
785
-
Tyr
GTA
[ENA]
¢þ
>WENV181305908
OFII01001202
[OFII] marine metagenome; seawater
887
964
+
Pro
TGG
[ENA]
¢þ
>WENV181305902
OFII01001069
[OFII] marine metagenome; seawater
895
820
-
Trp
CCA
[ENA]
¢þ
>WENV181305916
OFII01001671
[OFII] marine metagenome; seawater
952
1025
+
Lys
CTT
[ENA]
¢þ
>WENV181305912
OFII01001396
[OFII] marine metagenome; seawater
967
892
-
Val
CAC
[ENA]
¢þ
>WENV181305891
OFII01000461
[OFII] marine metagenome; seawater
1037
962
-
Thr
TGT
[ENA]
¢þ
>WENV181305886
OFII01000292
[OFII] marine metagenome; seawater
1061
977
-
Leu
CAG
[ENA]
¢þ
>WENV181305905
OFII01001152
[OFII] marine metagenome; seawater
1155
1078
-
fMet
CAT
[ENA]
¢þ
>WENV181305906
OFII01001163
[OFII] marine metagenome; seawater
1161
1237
+
Arg
CCG
[ENA]
¢þ
>WENV181305895
OFII01000491
[OFII] marine metagenome; seawater
1163
1255
+
Ser
GCT
[ENA]
¢þ
>WENV181305904
OFII01001132
[OFII] marine metagenome; seawater
1171
1097
-
Gly
CCC
[ENA]
¢þ
>WENV181305903
OFII01001099
[OFII] marine metagenome; seawater
1234
1158
-
Lys
CTT
[ENA]
¢þ
>WENV181305888
OFII01000311
[OFII] marine metagenome; seawater
1257
1183
-
Arg
TCT
[ENA]
¢þ
>WENV181305909
OFII01001253
[OFII] marine metagenome; seawater
1320
1396
+
fMet
CAT
[ENA]
¢þ
>WENV181305885
OFII01000292
[OFII] marine metagenome; seawater
1327
1243
-
Leu
TAG
[ENA]
¢þ
>WENV181305881
OFII01000160
[OFII] marine metagenome; seawater
1337
1413
+
Met
CAT
[ENA]
¢þ
>WENV181305915
OFII01001606
[OFII] marine metagenome; seawater
1342
1267
-
Ala
CGC
[ENA]
¢þ
>WENV181305890
OFII01000456
[OFII] marine metagenome; seawater
1358
1283
-
Asp
GTC
[ENA]
¢þ
>WENV181305899
OFII01000764
[OFII] marine metagenome; seawater
1365
1292
-
Cys
GCA
[ENA]
¢þ
>WENV181305896
OFII01000684
[OFII] marine metagenome; seawater
1401
1475
+
Gln
TTG
[ENA]
¢þ
>WENV181305910
OFII01001268
[OFII] marine metagenome; seawater
1409
1486
+
Val
TAC
[ENA]
¢þ
>WENV181305882
OFII01000231
[OFII] marine metagenome; seawater
1549
1625
+
Pro
TGG
[ENA]
¢þ
>WENV181305898
OFII01000764
[OFII] marine metagenome; seawater
1570
1495
-
Gly
GCC
[ENA]
¢þ
>WENV181305883
OFII01000231
[OFII] marine metagenome; seawater
1654
1730
+
Arg
TCT
[ENA]
¢þ
>WENV181305897
OFII01000700
[OFII] marine metagenome; seawater
1704
1779
+
Phe
GAA
[ENA]
¢þ
>WENV181305889
OFII01000327
[OFII] marine metagenome; seawater
1759
1684
-
Asn
GTT
[ENA]
¢þ
>WENV181305884
OFII01000231
[OFII] marine metagenome; seawater
1769
1844
+
His
GTG
[ENA]
¢þ
>WENV181305900
OFII01000781
[OFII] marine metagenome; seawater
1826
1912
+
Leu
TAA
[ENA]
¢þ
>WENV181305887
OFII01000311
[OFII] marine metagenome; seawater
2783
2859
+
Ala
GGC
[ENA]
¢þ
>WENV181305877
OFII01000077
[OFII] marine metagenome; seawater
2884
2969
+
Leu
GAG
[ENA]
¢þ
>WENV181305878
OFII01000116
[OFII] marine metagenome; seawater
3668
3744
+
Pro
GGG
[ENA]
¢þ
>WENV181305876
OFII01000076
[OFII] marine metagenome; seawater
3788
3864
+
Thr
CGT
[ENA]
¢þ
>WENV181305875
OFII01000016
[OFII] marine metagenome; seawater
5882
5807
-
Ala
TGC
[ENA]
¢þ
>WENV181305874
OFII01000016
[OFII] marine metagenome; seawater
6240
6164
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK