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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFKB] marine metagenome; seawater
HIT:
103 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181318896
OFKB01004723
[OFKB] marine metagenome; seawater
10
87
+
Asp
GTC
[ENA]
¢þ
>WENV181318918
OFKB01007286
[OFKB] marine metagenome; seawater
42
117
+
Arg
CCG
[ENA]
¢þ
>WENV181318858
OFKB01001837
[OFKB] marine metagenome; seawater
51
124
+
Thr
AGT
[ENA]
¢þ
>WENV181318883
OFKB01003067
[OFKB] marine metagenome; seawater
51
124
+
Gly
GCC
[ENA]
¢þ
>WENV181318904
OFKB01005662
[OFKB] marine metagenome; seawater
54
128
+
Arg
TCG
[ENA]
¢þ
>WENV181318849
OFKB01001300
[OFKB] marine metagenome; seawater
122
48
-
Ala
GGC
[ENA]
¢þ
>WENV181318923
OFKB01008321
[OFKB] marine metagenome; seawater
123
36
-
Leu
TAA
[ENA]
¢þ
>WENV181318871
OFKB01002044
[OFKB] marine metagenome; seawater
126
53
-
Pro
GGG
[ENA]
¢þ
>WENV181318905
OFKB01005662
[OFKB] marine metagenome; seawater
133
205
+
Arg
TCT
[ENA]
¢þ
>WENV181318917
OFKB01007274
[OFKB] marine metagenome; seawater
135
59
-
Asp
GTC
[ENA]
¢þ
>WENV181318895
OFKB01004502
[OFKB] marine metagenome; seawater
171
85
-
Leu
GAG
[ENA]
¢þ
>WENV181318899
OFKB01004922
[OFKB] marine metagenome; seawater
181
255
+
His
GTG
[ENA]
¢þ
>WENV181318898
OFKB01004886
[OFKB] marine metagenome; seawater
182
106
-
Ala
GGC
[ENA]
¢þ
>WENV181318915
OFKB01006925
[OFKB] marine metagenome; seawater
182
106
-
fMet
CAT
[ENA]
¢þ
>WENV181318834
OFKB01000805
[OFKB] marine metagenome; seawater
201
276
+
Thr
TGT
[ENA]
¢þ
>WENV181318874
OFKB01002154
[OFKB] marine metagenome; seawater
201
276
+
Thr
TGT
[ENA]
¢þ
>WENV181318891
OFKB01003873
[OFKB] marine metagenome; seawater
204
293
+
Ser
GGA
[ENA]
¢þ
>WENV181318866
OFKB01001969
[OFKB] marine metagenome; seawater
209
284
+
Thr
TGT
[ENA]
¢þ
>WENV181318920
OFKB01007286
[OFKB] marine metagenome; seawater
213
140
-
Met
CAT
[ENA]
¢þ
>WENV181318922
OFKB01008272
[OFKB] marine metagenome; seawater
242
165
-
Glu
TTC
[ENA]
¢þ
>WENV181318910
OFKB01005896
[OFKB] marine metagenome; seawater
247
318
+
Gly
GCC
[ENA]
¢þ
>WENV181318916
OFKB01007274
[OFKB] marine metagenome; seawater
254
179
-
Val
TAC
[ENA]
¢þ
>WENV181318850
OFKB01001304
[OFKB] marine metagenome; seawater
256
180
-
Arg
TCT
[ENA]
¢þ
>WENV181318903
OFKB01005588
[OFKB] marine metagenome; seawater
260
337
+
Asp
GTC
[ENA]
¢þ
>WENV181318894
OFKB01004466
[OFKB] marine metagenome; seawater
260
344
+
Leu
TAG
[ENA]
¢þ
>WENV181318908
OFKB01005715
[OFKB] marine metagenome; seawater
261
188
-
Gln
TTG
[ENA]
¢þ
>WENV181318909
OFKB01005760
[OFKB] marine metagenome; seawater
264
340
+
Pro
GGG
[ENA]
¢þ
>WENV181318901
OFKB01005359
[OFKB] marine metagenome; seawater
265
190
-
Asn
GTT
[ENA]
¢þ
>WENV181318859
OFKB01001837
[OFKB] marine metagenome; seawater
275
348
+
Lys
CTT
[ENA]
¢þ
>WENV181318870
OFKB01002007
[OFKB] marine metagenome; seawater
276
203
-
Ala
TGC
[ENA]
¢þ
>WENV181318851
OFKB01001570
[OFKB] marine metagenome; seawater
277
352
+
Ala
TGC
[ENA]
¢þ
>WENV181318828
OFKB01000177
[OFKB] marine metagenome; seawater
280
356
+
Arg
TCT
[ENA]
¢þ
>WENV181318835
OFKB01000805
[OFKB] marine metagenome; seawater
281
365
+
Tyr
GTA
[ENA]
¢þ
>WENV181318829
OFKB01000425
[OFKB] marine metagenome; seawater
284
373
+
Ser
GCT
[ENA]
¢þ
>WENV181318914
OFKB01006925
[OFKB] marine metagenome; seawater
288
213
-
Gly
TCC
[ENA]
¢þ
>WENV181318906
OFKB01005662
[OFKB] marine metagenome; seawater
290
375
+
Leu
TAA
[ENA]
¢þ
>WENV181318875
OFKB01002154
[OFKB] marine metagenome; seawater
291
374
+
Tyr
GTA
[ENA]
¢þ
>WENV181318848
OFKB01001300
[OFKB] marine metagenome; seawater
315
240
-
Glu
TTC
[ENA]
¢þ
>WENV181318889
OFKB01003825
[OFKB] marine metagenome; seawater
316
240
-
Arg
CCG
[ENA]
¢þ
>WENV181318884
OFKB01003187
[OFKB] marine metagenome; seawater
324
406
+
Leu
CAA
[ENA]
¢þ
>WENV181318921
OFKB01008272
[OFKB] marine metagenome; seawater
326
251
-
Ala
GGC
[ENA]
¢þ
>WENV181318900
OFKB01005170
[OFKB] marine metagenome; seawater
328
252
-
Arg
TCT
[ENA]
¢þ
>WENV181318881
OFKB01002912
[OFKB] marine metagenome; seawater
331
407
+
Arg
TCT
[ENA]
¢þ
>WENV181318902
OFKB01005557
[OFKB] marine metagenome; seawater
343
258
-
Ser
TGA
[ENA]
¢þ
>WENV181318913
OFKB01006768
[OFKB] marine metagenome; seawater
350
276
-
Val
CAC
[ENA]
¢þ
>WENV181318853
OFKB01001653
[OFKB] marine metagenome; seawater
351
275
-
Arg
ACG
[ENA]
¢þ
>WENV181318893
OFKB01004331
[OFKB] marine metagenome; seawater
354
268
-
Leu
GAG
[ENA]
¢þ
>WENV181318890
OFKB01003855
[OFKB] marine metagenome; seawater
356
283
-
Gln
CTG
[ENA]
¢þ
>WENV181318867
OFKB01001969
[OFKB] marine metagenome; seawater
359
443
+
Tyr
GTA
[ENA]
¢þ
>WENV181318843
OFKB01001174
[OFKB] marine metagenome; seawater
364
436
+
Gln
TTG
[ENA]
¢þ
>WENV181318864
OFKB01001941
[OFKB] marine metagenome; seawater
373
446
+
Gly
CCC
[ENA]
¢þ
>WENV181318872
OFKB01002074
[OFKB] marine metagenome; seawater
376
448
+
Thr
CGT
[ENA]
¢þ
>WENV181318876
OFKB01002154
[OFKB] marine metagenome; seawater
378
449
+
Gly
TCC
[ENA]
¢þ
>WENV181318888
OFKB01003561
[OFKB] marine metagenome; seawater
379
303
-
fMet
CAT
[ENA]
¢þ
>WENV181318919
OFKB01007286
[OFKB] marine metagenome; seawater
381
309
-
Lys
CTT
[ENA]
¢þ
>WENV181318885
OFKB01003277
[OFKB] marine metagenome; seawater
382
289
-
Ser
GCT
[ENA]
¢þ
>WENV181318882
OFKB01002995
[OFKB] marine metagenome; seawater
382
458
+
Val
GAC
[ENA]
¢þ
>WENV181318911
OFKB01005940
[OFKB] marine metagenome; seawater
391
315
-
Pro
GGG
[ENA]
¢þ
>WENV181318836
OFKB01000805
[OFKB] marine metagenome; seawater
400
474
+
Thr
GGT
[ENA]
¢þ
>WENV181318863
OFKB01001851
[OFKB] marine metagenome; seawater
416
331
-
Leu
TAA
[ENA]
¢þ
>WENV181318865
OFKB01001957
[OFKB] marine metagenome; seawater
425
329
-
SeC
TCC
[ENA]
¢þ
>WENV181318852
OFKB01001653
[OFKB] marine metagenome; seawater
431
360
-
Gln
CTG
[ENA]
¢þ
>WENV181318886
OFKB01003431
[OFKB] marine metagenome; seawater
449
534
+
Tyr
GTA
[ENA]
¢þ
>WENV181318877
OFKB01002154
[OFKB] marine metagenome; seawater
456
531
+
Thr
GGT
[ENA]
¢þ
>WENV181318892
OFKB01004068
[OFKB] marine metagenome; seawater
457
372
-
Leu
GAG
[ENA]
¢þ
>WENV181318880
OFKB01002748
[OFKB] marine metagenome; seawater
473
399
-
Glu
CTC
[ENA]
¢þ
>WENV181318842
OFKB01001125
[OFKB] marine metagenome; seawater
476
401
-
Ala
TGC
[ENA]
¢þ
>WENV181318897
OFKB01004813
[OFKB] marine metagenome; seawater
492
416
-
Arg
TCT
[ENA]
¢þ
>WENV181318887
OFKB01003538
[OFKB] marine metagenome; seawater
502
416
-
Leu
CAA
[ENA]
¢þ
>WENV181318912
OFKB01006024
[OFKB] marine metagenome; seawater
513
427
-
Leu
CAA
[ENA]
¢þ
>WENV181318845
OFKB01001212
[OFKB] marine metagenome; seawater
515
598
+
Ser
CGA
[ENA]
¢þ
>WENV181318879
OFKB01002432
[OFKB] marine metagenome; seawater
532
445
-
Leu
TAG
[ENA]
¢þ
>WENV181318907
OFKB01005662
[OFKB] marine metagenome; seawater
538
466
-
Gln
TTG
[ENA]
¢þ
>WENV181318844
OFKB01001189
[OFKB] marine metagenome; seawater
552
627
+
Lys
TTT
[ENA]
¢þ
>WENV181318860
OFKB01001837
[OFKB] marine metagenome; seawater
554
626
+
Gln
TTG
[ENA]
¢þ
>WENV181318868
OFKB01001969
[OFKB] marine metagenome; seawater
555
628
+
Gly
TCC
[ENA]
¢þ
>WENV181318854
OFKB01001720
[OFKB] marine metagenome; seawater
556
631
+
Val
TAC
[ENA]
¢þ
>WENV181318862
OFKB01001851
[OFKB] marine metagenome; seawater
558
482
-
Cys
GCA
[ENA]
¢þ
>WENV181318855
OFKB01001720
[OFKB] marine metagenome; seawater
647
723
+
Asp
GTC
[ENA]
¢þ
>WENV181318878
OFKB01002412
[OFKB] marine metagenome; seawater
650
575
-
Val
CAC
[ENA]
¢þ
>WENV181318869
OFKB01001969
[OFKB] marine metagenome; seawater
650
723
+
Thr
GGT
[ENA]
¢þ
>WENV181318873
OFKB01002079
[OFKB] marine metagenome; seawater
665
752
+
Ser
TGA
[ENA]
¢þ
>WENV181318846
OFKB01001212
[OFKB] marine metagenome; seawater
680
755
+
Glu
CTC
[ENA]
¢þ
>WENV181318839
OFKB01001018
[OFKB] marine metagenome; seawater
682
770
+
Ser
CGA
[ENA]
¢þ
>WENV181318857
OFKB01001772
[OFKB] marine metagenome; seawater
685
761
+
Met
CAT
[ENA]
¢þ
>WENV181318837
OFKB01000805
[OFKB] marine metagenome; seawater
690
765
+
Trp
CCA
[ENA]
¢þ
>WENV181318840
OFKB01001020
[OFKB] marine metagenome; seawater
703
777
+
Gln
TTG
[ENA]
¢þ
>WENV181318861
OFKB01001837
[OFKB] marine metagenome; seawater
765
682
-
Leu
CAA
[ENA]
¢þ
>WENV181318838
OFKB01001010
[OFKB] marine metagenome; seawater
785
712
-
Lys
CTT
[ENA]
¢þ
>WENV181318856
OFKB01001725
[OFKB] marine metagenome; seawater
796
707
-
Ser
CGA
[ENA]
¢þ
>WENV181318825
OFKB01000039
[OFKB] marine metagenome; seawater
818
894
+
Pro
GGG
[ENA]
¢þ
>WENV181318847
OFKB01001212
[OFKB] marine metagenome; seawater
825
899
+
Arg
TCT
[ENA]
¢þ
>WENV181318841
OFKB01001074
[OFKB] marine metagenome; seawater
941
1017
+
Pro
CGG
[ENA]
¢þ
>WENV181318832
OFKB01000578
[OFKB] marine metagenome; seawater
1177
1252
+
Lys
TTT
[ENA]
¢þ
>WENV181318831
OFKB01000445
[OFKB] marine metagenome; seawater
1281
1356
+
Arg
CCT
[ENA]
¢þ
>WENV181318833
OFKB01000584
[OFKB] marine metagenome; seawater
1306
1232
-
Ala
TGC
[ENA]
¢þ
>WENV181318827
OFKB01000129
[OFKB] marine metagenome; seawater
1366
1280
-
Leu
TAA
[ENA]
¢þ
>WENV181318826
OFKB01000129
[OFKB] marine metagenome; seawater
1455
1382
-
Cys
GCA
[ENA]
¢þ
>WENV181318830
OFKB01000430
[OFKB] marine metagenome; seawater
2054
2143
+
Ser
GGA
[ENA]
¢þ
>WENV181318821
OFKB01000006
[OFKB] marine metagenome; seawater
5278
5355
+
Ile
GAT
[ENA]
¢þ
>WENV181318822
OFKB01000006
[OFKB] marine metagenome; seawater
5364
5439
+
Ala
TGC
[ENA]
¢þ
>WENV181318823
OFKB01000006
[OFKB] marine metagenome; seawater
8800
8886
+
Leu
CAA
[ENA]
¢þ
>WENV181318824
OFKB01000006
[OFKB] marine metagenome; seawater
8979
9055
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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