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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFKK] marine metagenome; seawater
HIT:
158 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181321157
OFKK01005332
[OFKK] marine metagenome; seawater
1
75
+
Cys
GCA
[ENA]
¢þ
>WENV181321205
OFKK01013173
[OFKK] marine metagenome; seawater
15
89
+
Arg
CCT
[ENA]
¢þ
>WENV181321188
OFKK01009676
[OFKK] marine metagenome; seawater
16
90
+
Ile2
CAT
[ENA]
¢þ
>WENV181321194
OFKK01010560
[OFKK] marine metagenome; seawater
24
97
+
Phe
GAA
[ENA]
¢þ
>WENV181321207
OFKK01013418
[OFKK] marine metagenome; seawater
44
128
+
Leu
TAG
[ENA]
¢þ
>WENV181321094
OFKK01000636
[OFKK] marine metagenome; seawater
45
121
+
Ile2
CAT
[ENA]
¢þ
>WENV181321176
OFKK01008303
[OFKK] marine metagenome; seawater
53
128
+
Thr
TGT
[ENA]
¢þ
>WENV181321070
OFKK01000081
[OFKK] marine metagenome; seawater
69
141
+
Gln
TTG
[ENA]
¢þ
>WENV181321128
OFKK01002111
[OFKK] marine metagenome; seawater
82
7
-
Ala
TGC
[ENA]
¢þ
>WENV181321085
OFKK01000427
[OFKK] marine metagenome; seawater
84
160
+
fMet
CAT
[ENA]
¢þ
>WENV181321213
OFKK01015441
[OFKK] marine metagenome; seawater
100
29
-
Thr
AGT
[ENA]
¢þ
>WENV181321184
OFKK01009100
[OFKK] marine metagenome; seawater
116
192
+
Arg
TCG
[ENA]
¢þ
>WENV181321117
OFKK01001404
[OFKK] marine metagenome; seawater
124
50
-
Thr
GGT
[ENA]
¢þ
>WENV181321192
OFKK01010278
[OFKK] marine metagenome; seawater
140
215
+
Val
TAC
[ENA]
¢þ
>WENV181321071
OFKK01000081
[OFKK] marine metagenome; seawater
145
218
+
Tyr
GTA
[ENA]
¢þ
>WENV181321174
OFKK01007918
[OFKK] marine metagenome; seawater
146
230
+
Leu
TAA
[ENA]
¢þ
>WENV181321171
OFKK01007092
[OFKK] marine metagenome; seawater
151
226
+
Ala
GGC
[ENA]
¢þ
>WENV181321125
OFKK01002066
[OFKK] marine metagenome; seawater
154
230
+
Pro
TGG
[ENA]
¢þ
>WENV181321189
OFKK01009676
[OFKK] marine metagenome; seawater
169
243
+
Ala
GGC
[ENA]
¢þ
>WENV181321163
OFKK01006022
[OFKK] marine metagenome; seawater
171
95
-
Arg
TCT
[ENA]
¢þ
>WENV181321137
OFKK01002700
[OFKK] marine metagenome; seawater
172
242
+
Gly
CCC
[ENA]
¢þ
>WENV181321110
OFKK01001080
[OFKK] marine metagenome; seawater
180
108
-
Gly
TCC
[ENA]
¢þ
>WENV181321127
OFKK01002111
[OFKK] marine metagenome; seawater
185
109
-
Ile
GAT
[ENA]
¢þ
>WENV181321186
OFKK01009128
[OFKK] marine metagenome; seawater
194
119
-
Ile
AAT
[ENA]
¢þ
>WENV181321115
OFKK01001309
[OFKK] marine metagenome; seawater
196
280
+
Leu
CAA
[ENA]
¢þ
>WENV181321195
OFKK01010737
[OFKK] marine metagenome; seawater
197
269
+
Arg
TCT
[ENA]
¢þ
>WENV181321120
OFKK01001508
[OFKK] marine metagenome; seawater
208
119
-
Ser
GGA
[ENA]
¢þ
>WENV181321183
OFKK01008988
[OFKK] marine metagenome; seawater
208
132
-
Arg
CCT
[ENA]
¢þ
>WENV181321144
OFKK01003418
[OFKK] marine metagenome; seawater
210
134
-
Arg
TCT
[ENA]
¢þ
>WENV181321175
OFKK01008139
[OFKK] marine metagenome; seawater
217
143
-
Val
GAC
[ENA]
¢þ
>WENV181321199
OFKK01011712
[OFKK] marine metagenome; seawater
217
290
+
Gln
TTG
[ENA]
¢þ
>WENV181321104
OFKK01000818
[OFKK] marine metagenome; seawater
222
148
-
Asn
GTT
[ENA]
¢þ
>WENV181321072
OFKK01000081
[OFKK] marine metagenome; seawater
222
294
+
Thr
TGT
[ENA]
¢þ
>WENV181321209
OFKK01014131
[OFKK] marine metagenome; seawater
227
156
-
Asp
GTC
[ENA]
¢þ
>WENV181321218
OFKK01020154
[OFKK] marine metagenome; seawater
228
151
-
Glu
TTC
[ENA]
¢þ
>WENV181321193
OFKK01010428
[OFKK] marine metagenome; seawater
234
162
-
Gln
TTG
[ENA]
¢þ
>WENV181321079
OFKK01000365
[OFKK] marine metagenome; seawater
239
314
+
Ala
TGC
[ENA]
¢þ
>WENV181321100
OFKK01000743
[OFKK] marine metagenome; seawater
247
172
-
Trp
CCA
[ENA]
¢þ
>WENV181321203
OFKK01012049
[OFKK] marine metagenome; seawater
252
180
-
Val
TAC
[ENA]
¢þ
>WENV181321169
OFKK01006622
[OFKK] marine metagenome; seawater
256
329
+
Gly
TCC
[ENA]
¢þ
>WENV181321129
OFKK01002194
[OFKK] marine metagenome; seawater
264
340
+
His
GTG
[ENA]
¢þ
>WENV181321086
OFKK01000539
[OFKK] marine metagenome; seawater
270
197
-
Ile
TAT
[ENA]
¢þ
>WENV181321196
OFKK01010737
[OFKK] marine metagenome; seawater
271
344
+
Pro
TGG
[ENA]
¢þ
>WENV181321214
OFKK01016334
[OFKK] marine metagenome; seawater
279
354
+
Glu
TTC
[ENA]
¢þ
>WENV181321172
OFKK01007145
[OFKK] marine metagenome; seawater
280
355
+
Ala
GGC
[ENA]
¢þ
>WENV181321132
OFKK01002380
[OFKK] marine metagenome; seawater
288
364
+
Pro
TGG
[ENA]
¢þ
>WENV181321197
OFKK01011106
[OFKK] marine metagenome; seawater
289
363
+
Thr
TGT
[ENA]
¢þ
>WENV181321111
OFKK01001084
[OFKK] marine metagenome; seawater
291
364
+
Gly
TCC
[ENA]
¢þ
>WENV181321083
OFKK01000421
[OFKK] marine metagenome; seawater
293
367
+
Glu
TTC
[ENA]
¢þ
>WENV181321152
OFKK01004148
[OFKK] marine metagenome; seawater
294
219
-
Trp
CCA
[ENA]
¢þ
>WENV181321159
OFKK01005599
[OFKK] marine metagenome; seawater
297
224
-
fMet
CAT
[ENA]
¢þ
>WENV181321215
OFKK01017333
[OFKK] marine metagenome; seawater
301
227
-
Glu
TTC
[ENA]
¢þ
>WENV181321105
OFKK01000915
[OFKK] marine metagenome; seawater
301
374
+
Ile
TAT
[ENA]
¢þ
>WENV181321098
OFKK01000717
[OFKK] marine metagenome; seawater
301
376
+
Pro
GGG
[ENA]
¢þ
>WENV181321119
OFKK01001508
[OFKK] marine metagenome; seawater
303
230
-
Gly
TCC
[ENA]
¢þ
>WENV181321187
OFKK01009192
[OFKK] marine metagenome; seawater
304
378
+
Ile
GAT
[ENA]
¢þ
>WENV181321212
OFKK01015157
[OFKK] marine metagenome; seawater
316
389
+
Glu
CTC
[ENA]
¢þ
>WENV181321208
OFKK01014123
[OFKK] marine metagenome; seawater
318
393
+
Trp
CCA
[ENA]
¢þ
>WENV181321123
OFKK01001799
[OFKK] marine metagenome; seawater
329
418
+
Ser
GGA
[ENA]
¢þ
>WENV181321080
OFKK01000365
[OFKK] marine metagenome; seawater
335
411
+
Ile
GAT
[ENA]
¢þ
>WENV181321136
OFKK01002659
[OFKK] marine metagenome; seawater
338
427
+
Ser
GCT
[ENA]
¢þ
>WENV181321161
OFKK01005938
[OFKK] marine metagenome; seawater
349
275
-
Ala
TGC
[ENA]
¢þ
>WENV181321204
OFKK01012484
[OFKK] marine metagenome; seawater
350
434
+
Leu
TAG
[ENA]
¢þ
>WENV181321142
OFKK01003288
[OFKK] marine metagenome; seawater
355
427
+
Val
AAC
[ENA]
¢þ
>WENV181321177
OFKK01008303
[OFKK] marine metagenome; seawater
355
438
+
Tyr
GTA
[ENA]
¢þ
>WENV181321162
OFKK01005947
[OFKK] marine metagenome; seawater
356
281
-
Thr
GGT
[ENA]
¢þ
>WENV181321143
OFKK01003340
[OFKK] marine metagenome; seawater
358
284
-
fMet
CAT
[ENA]
¢þ
>WENV181321087
OFKK01000568
[OFKK] marine metagenome; seawater
366
449
+
Leu
GAG
[ENA]
¢þ
>WENV181321211
OFKK01014512
[OFKK] marine metagenome; seawater
368
444
+
His
GTG
[ENA]
¢þ
>WENV181321202
OFKK01012049
[OFKK] marine metagenome; seawater
369
287
-
Tyr
GTA
[ENA]
¢þ
>WENV181321198
OFKK01011436
[OFKK] marine metagenome; seawater
376
292
-
Leu
TAG
[ENA]
¢þ
>WENV181321158
OFKK01005427
[OFKK] marine metagenome; seawater
380
452
+
Gly
GCC
[ENA]
¢þ
>WENV181321116
OFKK01001322
[OFKK] marine metagenome; seawater
387
463
+
Pro
GGG
[ENA]
¢þ
>WENV181321206
OFKK01013191
[OFKK] marine metagenome; seawater
389
316
-
Cys
GCA
[ENA]
¢þ
>WENV181321118
OFKK01001463
[OFKK] marine metagenome; seawater
390
315
-
Arg
CCT
[ENA]
¢þ
>WENV181321156
OFKK01005070
[OFKK] marine metagenome; seawater
401
328
-
Gln
TTG
[ENA]
¢þ
>WENV181321131
OFKK01002372
[OFKK] marine metagenome; seawater
401
476
+
Ala
GGC
[ENA]
¢þ
>WENV181321107
OFKK01001011
[OFKK] marine metagenome; seawater
402
326
-
Ile2
CAT
[ENA]
¢þ
>WENV181321216
OFKK01017659
[OFKK] marine metagenome; seawater
402
328
-
Arg
GCG
[ENA]
¢þ
>WENV181321217
OFKK01019997
[OFKK] marine metagenome; seawater
407
481
+
Gly
TCC
[ENA]
¢þ
>WENV181321096
OFKK01000647
[OFKK] marine metagenome; seawater
408
333
-
Thr
TGT
[ENA]
¢þ
>WENV181321074
OFKK01000126
[OFKK] marine metagenome; seawater
409
484
+
Thr
CGT
[ENA]
¢þ
>WENV181321168
OFKK01006383
[OFKK] marine metagenome; seawater
411
328
-
Ser
AGA
[ENA]
¢þ
>WENV181321124
OFKK01002062
[OFKK] marine metagenome; seawater
418
346
-
Asn
GTT
[ENA]
¢þ
>WENV181321178
OFKK01008458
[OFKK] marine metagenome; seawater
421
495
+
Gly
GCC
[ENA]
¢þ
>WENV181321182
OFKK01008785
[OFKK] marine metagenome; seawater
428
354
-
Asp
GTC
[ENA]
¢þ
>WENV181321164
OFKK01006109
[OFKK] marine metagenome; seawater
431
507
+
fMet
CAT
[ENA]
¢þ
>WENV181321150
OFKK01003965
[OFKK] marine metagenome; seawater
434
359
-
Ala
TGC
[ENA]
¢þ
>WENV181321160
OFKK01005938
[OFKK] marine metagenome; seawater
434
360
-
Ile
GAT
[ENA]
¢þ
>WENV181321201
OFKK01012049
[OFKK] marine metagenome; seawater
447
374
-
fMet
CAT
[ENA]
¢þ
>WENV181321145
OFKK01003540
[OFKK] marine metagenome; seawater
449
377
-
Pro
CGG
[ENA]
¢þ
>WENV181321191
OFKK01010169
[OFKK] marine metagenome; seawater
449
525
+
Val
GAC
[ENA]
¢þ
>WENV181321135
OFKK01002608
[OFKK] marine metagenome; seawater
456
382
-
Thr
GGT
[ENA]
¢þ
>WENV181321138
OFKK01002821
[OFKK] marine metagenome; seawater
461
537
+
Ile2
CAT
[ENA]
¢þ
>WENV181321170
OFKK01006725
[OFKK] marine metagenome; seawater
463
390
-
Trp
CCA
[ENA]
¢þ
>WENV181321151
OFKK01004132
[OFKK] marine metagenome; seawater
463
538
+
Glu
TTC
[ENA]
¢þ
>WENV181321166
OFKK01006183
[OFKK] marine metagenome; seawater
464
538
+
Asp
GTC
[ENA]
¢þ
>WENV181321190
OFKK01009800
[OFKK] marine metagenome; seawater
464
548
+
Leu
GAG
[ENA]
¢þ
>WENV181321210
OFKK01014506
[OFKK] marine metagenome; seawater
465
537
+
Val
GAC
[ENA]
¢þ
>WENV181321179
OFKK01008574
[OFKK] marine metagenome; seawater
468
540
+
Arg
CCG
[ENA]
¢þ
>WENV181321173
OFKK01007528
[OFKK] marine metagenome; seawater
485
412
-
Cys
GCA
[ENA]
¢þ
>WENV181321095
OFKK01000647
[OFKK] marine metagenome; seawater
499
425
-
Lys
CTT
[ENA]
¢þ
>WENV181321181
OFKK01008785
[OFKK] marine metagenome; seawater
503
432
-
Cys
GCA
[ENA]
¢þ
>WENV181321148
OFKK01003662
[OFKK] marine metagenome; seawater
518
593
+
Thr
TGT
[ENA]
¢þ
>WENV181321114
OFKK01001283
[OFKK] marine metagenome; seawater
522
446
-
fMet
CAT
[ENA]
¢þ
>WENV181321146
OFKK01003641
[OFKK] marine metagenome; seawater
524
599
+
Val
TAC
[ENA]
¢þ
>WENV181321200
OFKK01012049
[OFKK] marine metagenome; seawater
528
453
-
Phe
GAA
[ENA]
¢þ
>WENV181321185
OFKK01009128
[OFKK] marine metagenome; seawater
533
461
-
His
GTG
[ENA]
¢þ
>WENV181321165
OFKK01006163
[OFKK] marine metagenome; seawater
537
623
+
Leu
TAA
[ENA]
¢þ
>WENV181321153
OFKK01004333
[OFKK] marine metagenome; seawater
547
474
-
Arg
TCG
[ENA]
¢þ
>WENV181321167
OFKK01006345
[OFKK] marine metagenome; seawater
555
631
+
Arg
TCT
[ENA]
¢þ
>WENV181321084
OFKK01000421
[OFKK] marine metagenome; seawater
556
632
+
Arg
TCT
[ENA]
¢þ
>WENV181321113
OFKK01001249
[OFKK] marine metagenome; seawater
573
657
+
Tyr
GTA
[ENA]
¢þ
>WENV181321180
OFKK01008785
[OFKK] marine metagenome; seawater
581
508
-
Gly
TCC
[ENA]
¢þ
>WENV181321130
OFKK01002283
[OFKK] marine metagenome; seawater
598
669
+
Cys
GCA
[ENA]
¢þ
>WENV181321154
OFKK01004542
[OFKK] marine metagenome; seawater
627
701
+
Val
GAC
[ENA]
¢þ
>WENV181321147
OFKK01003641
[OFKK] marine metagenome; seawater
627
703
+
Asp
GTC
[ENA]
¢þ
>WENV181321134
OFKK01002608
[OFKK] marine metagenome; seawater
631
547
-
Tyr
GTA
[ENA]
¢þ
>WENV181321141
OFKK01002917
[OFKK] marine metagenome; seawater
646
562
-
Leu
TAG
[ENA]
¢þ
>WENV181321109
OFKK01001080
[OFKK] marine metagenome; seawater
650
577
-
fMet
CAT
[ENA]
¢þ
>WENV181321155
OFKK01004691
[OFKK] marine metagenome; seawater
656
731
+
Phe
GAA
[ENA]
¢þ
>WENV181321088
OFKK01000572
[OFKK] marine metagenome; seawater
658
582
-
Val
TAC
[ENA]
¢þ
>WENV181321081
OFKK01000410
[OFKK] marine metagenome; seawater
661
737
+
His
GTG
[ENA]
¢þ
>WENV181321108
OFKK01001047
[OFKK] marine metagenome; seawater
680
756
+
fMet
CAT
[ENA]
¢þ
>WENV181321149
OFKK01003740
[OFKK] marine metagenome; seawater
745
673
-
Gly
GCC
[ENA]
¢þ
>WENV181321082
OFKK01000416
[OFKK] marine metagenome; seawater
761
686
-
Lys
TTT
[ENA]
¢þ
>WENV181321090
OFKK01000578
[OFKK] marine metagenome; seawater
775
702
-
Cys
GCA
[ENA]
¢þ
>WENV181321140
OFKK01002917
[OFKK] marine metagenome; seawater
776
701
-
His
GTG
[ENA]
¢þ
>WENV181321121
OFKK01001550
[OFKK] marine metagenome; seawater
791
867
+
Pro
TGG
[ENA]
¢þ
>WENV181321077
OFKK01000281
[OFKK] marine metagenome; seawater
816
743
-
Ile
TAT
[ENA]
¢þ
>WENV181321099
OFKK01000725
[OFKK] marine metagenome; seawater
827
753
-
Asn
GTT
[ENA]
¢þ
>WENV181321133
OFKK01002424
[OFKK] marine metagenome; seawater
868
782
-
Ser
TGA
[ENA]
¢þ
>WENV181321102
OFKK01000775
[OFKK] marine metagenome; seawater
868
792
-
Asp
ATC
[ENA]
¢þ
>WENV181321112
OFKK01001118
[OFKK] marine metagenome; seawater
887
812
-
Val
TAC
[ENA]
¢þ
>WENV181321139
OFKK01002917
[OFKK] marine metagenome; seawater
891
815
-
Arg
TCT
[ENA]
¢þ
>WENV181321089
OFKK01000578
[OFKK] marine metagenome; seawater
923
1012
+
Ser
CGA
[ENA]
¢þ
>WENV181321122
OFKK01001746
[OFKK] marine metagenome; seawater
927
850
-
Val
TAC
[ENA]
¢þ
>WENV181321097
OFKK01000680
[OFKK] marine metagenome; seawater
939
864
-
Asn
GTT
[ENA]
¢þ
>WENV181321101
OFKK01000775
[OFKK] marine metagenome; seawater
958
883
-
Val
TAC
[ENA]
¢þ
>WENV181321126
OFKK01002084
[OFKK] marine metagenome; seawater
985
912
-
Met
CAT
[ENA]
¢þ
>WENV181321062
OFKK01000033
[OFKK] marine metagenome; seawater
1075
1000
-
Gly
GCC
[ENA]
¢þ
>WENV181321075
OFKK01000153
[OFKK] marine metagenome; seawater
1083
1160
+
Glu
TTC
[ENA]
¢þ
>WENV181321106
OFKK01000993
[OFKK] marine metagenome; seawater
1122
1196
+
Arg
CCG
[ENA]
¢þ
>WENV181321103
OFKK01000789
[OFKK] marine metagenome; seawater
1136
1063
-
Gln
TTG
[ENA]
¢þ
>WENV181321076
OFKK01000182
[OFKK] marine metagenome; seawater
1314
1240
-
Arg
CCT
[ENA]
¢þ
>WENV181321065
OFKK01000038
[OFKK] marine metagenome; seawater
1384
1459
+
Gln
TTG
[ENA]
¢þ
>WENV181321093
OFKK01000603
[OFKK] marine metagenome; seawater
1443
1368
-
Thr
GGT
[ENA]
¢þ
>WENV181321066
OFKK01000038
[OFKK] marine metagenome; seawater
1462
1534
+
Tyr
GTA
[ENA]
¢þ
>WENV181321092
OFKK01000603
[OFKK] marine metagenome; seawater
1534
1460
-
Gly
TCC
[ENA]
¢þ
>WENV181321067
OFKK01000038
[OFKK] marine metagenome; seawater
1572
1646
+
Asn
GTT
[ENA]
¢þ
>WENV181321091
OFKK01000603
[OFKK] marine metagenome; seawater
1642
1560
-
Tyr
GTA
[ENA]
¢þ
>WENV181321078
OFKK01000304
[OFKK] marine metagenome; seawater
1809
1885
+
Asp
GTC
[ENA]
¢þ
>WENV181321061
OFKK01000018
[OFKK] marine metagenome; seawater
2255
2326
+
Thr
AGT
[ENA]
¢þ
>WENV181321073
OFKK01000121
[OFKK] marine metagenome; seawater
2564
2640
+
Pro
TGG
[ENA]
¢þ
>WENV181321069
OFKK01000065
[OFKK] marine metagenome; seawater
2681
2766
+
Leu
CAG
[ENA]
¢þ
>WENV181321068
OFKK01000044
[OFKK] marine metagenome; seawater
3000
2923
-
Pro
TGG
[ENA]
¢þ
>WENV181321064
OFKK01000036
[OFKK] marine metagenome; seawater
3199
3124
-
Ala
TGC
[ENA]
¢þ
>WENV181321063
OFKK01000036
[OFKK] marine metagenome; seawater
3287
3211
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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