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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFKO] marine metagenome; seawater
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181321988
OFKO01005433
[OFKO] marine metagenome; seawater
14
88
+
Ala
TGC
[ENA]
¢þ
>WENV181321994
OFKO01008388
[OFKO] marine metagenome; seawater
35
110
+
Thr
CGT
[ENA]
¢þ
>WENV181321999
OFKO01009530
[OFKO] marine metagenome; seawater
56
130
+
Arg
TCT
[ENA]
¢þ
>WENV181321991
OFKO01007718
[OFKO] marine metagenome; seawater
70
143
+
Thr
TGT
[ENA]
¢þ
>WENV181321976
OFKO01004088
[OFKO] marine metagenome; seawater
70
153
+
Tyr
GTA
[ENA]
¢þ
>WENV181321993
OFKO01007738
[OFKO] marine metagenome; seawater
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV181321982
OFKO01004427
[OFKO] marine metagenome; seawater
93
9
-
Leu
TAG
[ENA]
¢þ
>WENV181321958
OFKO01001856
[OFKO] marine metagenome; seawater
93
165
+
Phe
GAA
[ENA]
¢þ
>WENV181321983
OFKO01004697
[OFKO] marine metagenome; seawater
115
199
+
Leu
TAG
[ENA]
¢þ
>WENV181321950
OFKO01001557
[OFKO] marine metagenome; seawater
133
206
+
Gln
TTG
[ENA]
¢þ
>WENV181321929
OFKO01000022
[OFKO] marine metagenome; seawater
138
214
+
Ile
GAT
[ENA]
¢þ
>WENV181321945
OFKO01000832
[OFKO] marine metagenome; seawater
152
228
+
Pro
GGG
[ENA]
¢þ
>WENV181321985
OFKO01004887
[OFKO] marine metagenome; seawater
153
228
+
Gly
GCC
[ENA]
¢þ
>WENV181321977
OFKO01004088
[OFKO] marine metagenome; seawater
168
241
+
Gly
TCC
[ENA]
¢þ
>WENV181321932
OFKO01000039
[OFKO] marine metagenome; seawater
172
98
-
Ala
TGC
[ENA]
¢þ
>WENV181321969
OFKO01002984
[OFKO] marine metagenome; seawater
188
274
+
Leu
CAA
[ENA]
¢þ
>WENV181321979
OFKO01004120
[OFKO] marine metagenome; seawater
203
278
+
Glu
TTC
[ENA]
¢þ
>WENV181321951
OFKO01001557
[OFKO] marine metagenome; seawater
214
288
+
Trp
CCA
[ENA]
¢þ
>WENV181321949
OFKO01001493
[OFKO] marine metagenome; seawater
216
291
+
Trp
CCA
[ENA]
¢þ
>WENV181321996
OFKO01008867
[OFKO] marine metagenome; seawater
222
293
+
Asp
GTC
[ENA]
¢þ
>WENV181321964
OFKO01002210
[OFKO] marine metagenome; seawater
234
308
+
Gln
TTG
[ENA]
¢þ
>WENV181321972
OFKO01003631
[OFKO] marine metagenome; seawater
248
319
+
Ala
CGC
[ENA]
¢þ
>WENV181321973
OFKO01003742
[OFKO] marine metagenome; seawater
249
166
-
Tyr
GTA
[ENA]
¢þ
>WENV181321990
OFKO01007631
[OFKO] marine metagenome; seawater
256
182
-
Glu
TTC
[ENA]
¢þ
>WENV181321957
OFKO01001838
[OFKO] marine metagenome; seawater
264
336
+
Arg
CCG
[ENA]
¢þ
>WENV181321930
OFKO01000022
[OFKO] marine metagenome; seawater
264
339
+
Ala
TGC
[ENA]
¢þ
>WENV181321978
OFKO01004088
[OFKO] marine metagenome; seawater
265
340
+
Thr
GGT
[ENA]
¢þ
>WENV181321974
OFKO01003965
[OFKO] marine metagenome; seawater
278
202
-
Met
CAT
[ENA]
¢þ
>WENV181321961
OFKO01001856
[OFKO] marine metagenome; seawater
286
213
-
Thr
AGT
[ENA]
¢þ
>WENV181321948
OFKO01001317
[OFKO] marine metagenome; seawater
292
206
-
Leu
CAA
[ENA]
¢þ
>WENV181321966
OFKO01002699
[OFKO] marine metagenome; seawater
292
208
-
Leu
TAG
[ENA]
¢þ
>WENV181321980
OFKO01004120
[OFKO] marine metagenome; seawater
296
371
+
Gly
GCC
[ENA]
¢þ
>WENV181321992
OFKO01007718
[OFKO] marine metagenome; seawater
299
373
+
Arg
TCG
[ENA]
¢þ
>WENV181321997
OFKO01009039
[OFKO] marine metagenome; seawater
305
230
-
Lys
TTT
[ENA]
¢þ
>WENV181321931
OFKO01000039
[OFKO] marine metagenome; seawater
327
253
-
Ile
GAT
[ENA]
¢þ
>WENV181321971
OFKO01003267
[OFKO] marine metagenome; seawater
335
259
-
Ile2
CAT
[ENA]
¢þ
>WENV181321970
OFKO01003035
[OFKO] marine metagenome; seawater
342
432
+
Ser
GCT
[ENA]
¢þ
>WENV181321981
OFKO01004403
[OFKO] marine metagenome; seawater
355
432
+
Ile
GAT
[ENA]
¢þ
>WENV181321935
OFKO01000268
[OFKO] marine metagenome; seawater
357
281
-
Arg
TCT
[ENA]
¢þ
>WENV181321986
OFKO01005175
[OFKO] marine metagenome; seawater
363
437
+
Lys
CTT
[ENA]
¢þ
>WENV181321989
OFKO01005730
[OFKO] marine metagenome; seawater
382
466
+
Leu
TAG
[ENA]
¢þ
>WENV181321942
OFKO01000418
[OFKO] marine metagenome; seawater
386
312
-
Met
CAT
[ENA]
¢þ
>WENV181321984
OFKO01004830
[OFKO] marine metagenome; seawater
386
312
-
Gly
GCC
[ENA]
¢þ
>WENV181321954
OFKO01001557
[OFKO] marine metagenome; seawater
407
333
-
Thr
TGT
[ENA]
¢þ
>WENV181321968
OFKO01002717
[OFKO] marine metagenome; seawater
410
337
-
Asp
GTC
[ENA]
¢þ
>WENV181321962
OFKO01001951
[OFKO] marine metagenome; seawater
423
349
-
Asn
GTT
[ENA]
¢þ
>WENV181321965
OFKO01002363
[OFKO] marine metagenome; seawater
425
352
-
fMet
CAT
[ENA]
¢þ
>WENV181321995
OFKO01008675
[OFKO] marine metagenome; seawater
426
353
-
Cys
GCA
[ENA]
¢þ
>WENV181321963
OFKO01002034
[OFKO] marine metagenome; seawater
427
353
-
Phe
GAA
[ENA]
¢þ
>WENV181321975
OFKO01004045
[OFKO] marine metagenome; seawater
428
357
-
Cys
GCA
[ENA]
¢þ
>WENV181321998
OFKO01009380
[OFKO] marine metagenome; seawater
430
348
-
Leu
TAA
[ENA]
¢þ
>WENV181321960
OFKO01001856
[OFKO] marine metagenome; seawater
438
364
-
Lys
CTT
[ENA]
¢þ
>WENV181321956
OFKO01001792
[OFKO] marine metagenome; seawater
438
522
+
Leu
TAA
[ENA]
¢þ
>WENV181321987
OFKO01005175
[OFKO] marine metagenome; seawater
454
529
+
Thr
TGT
[ENA]
¢þ
>WENV181321943
OFKO01000731
[OFKO] marine metagenome; seawater
456
383
-
Thr
GGT
[ENA]
¢þ
>WENV181321952
OFKO01001557
[OFKO] marine metagenome; seawater
511
582
+
Pro
AGG
[ENA]
¢þ
>WENV181321959
OFKO01001856
[OFKO] marine metagenome; seawater
530
611
+
Ser
AGA
[ENA]
¢þ
>WENV181321946
OFKO01000845
[OFKO] marine metagenome; seawater
540
466
-
Arg
TCT
[ENA]
¢þ
>WENV181321967
OFKO01002717
[OFKO] marine metagenome; seawater
583
494
-
Tyr
GTA
[ENA]
¢þ
>WENV181321947
OFKO01000892
[OFKO] marine metagenome; seawater
606
696
+
Ser
GGA
[ENA]
¢þ
>WENV181321953
OFKO01001557
[OFKO] marine metagenome; seawater
716
645
-
His
GTG
[ENA]
¢þ
>WENV181321955
OFKO01001730
[OFKO] marine metagenome; seawater
717
640
-
Pro
TGG
[ENA]
¢þ
>WENV181321940
OFKO01000315
[OFKO] marine metagenome; seawater
783
709
-
Asn
GTT
[ENA]
¢þ
>WENV181321936
OFKO01000310
[OFKO] marine metagenome; seawater
800
875
+
Val
TAC
[ENA]
¢þ
>WENV181321944
OFKO01000781
[OFKO] marine metagenome; seawater
852
781
-
Gln
TTG
[ENA]
¢þ
>WENV181321939
OFKO01000315
[OFKO] marine metagenome; seawater
892
820
-
Tyr
GTA
[ENA]
¢þ
>WENV181321937
OFKO01000310
[OFKO] marine metagenome; seawater
895
971
+
Asp
GTC
[ENA]
¢þ
>WENV181321941
OFKO01000361
[OFKO] marine metagenome; seawater
948
872
-
Pro
TGG
[ENA]
¢þ
>WENV181321938
OFKO01000315
[OFKO] marine metagenome; seawater
1048
974
-
Gln
TTG
[ENA]
¢þ
>WENV181321933
OFKO01000048
[OFKO] marine metagenome; seawater
1128
1055
-
Ile
TAT
[ENA]
¢þ
>WENV181321934
OFKO01000113
[OFKO] marine metagenome; seawater
1422
1347
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK