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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFKQ] marine metagenome; seawater
HIT:
100 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181322364
OFKQ01017465
[OFKQ] marine metagenome; seawater
24
113
+
Ser
GGA
[ENA]
¢þ
>WENV181322302
OFKQ01001485
[OFKQ] marine metagenome; seawater
51
140
+
Ser
GGA
[ENA]
¢þ
>WENV181322358
OFKQ01014267
[OFKQ] marine metagenome; seawater
59
134
+
Trp
CCA
[ENA]
¢þ
>WENV181322338
OFKQ01006113
[OFKQ] marine metagenome; seawater
85
9
-
Arg
TCT
[ENA]
¢þ
>WENV181322359
OFKQ01014279
[OFKQ] marine metagenome; seawater
93
187
+
Ser
GCT
[ENA]
¢þ
>WENV181322371
OFKQ01020500
[OFKQ] marine metagenome; seawater
105
177
+
Ala
CGC
[ENA]
¢þ
>WENV181322360
OFKQ01014933
[OFKQ] marine metagenome; seawater
115
33
-
Leu
TAG
[ENA]
¢þ
>WENV181322346
OFKQ01007628
[OFKQ] marine metagenome; seawater
127
52
-
Arg
CCT
[ENA]
¢þ
>WENV181322334
OFKQ01005951
[OFKQ] marine metagenome; seawater
135
205
+
Gly
GCC
[ENA]
¢þ
>WENV181322365
OFKQ01017498
[OFKQ] marine metagenome; seawater
137
212
+
Arg
TCG
[ENA]
¢þ
>WENV181322368
OFKQ01017768
[OFKQ] marine metagenome; seawater
142
67
-
His
GTG
[ENA]
¢þ
>WENV181322294
OFKQ01000784
[OFKQ] marine metagenome; seawater
143
218
+
Asn
GTT
[ENA]
¢þ
>WENV181322352
OFKQ01011831
[OFKQ] marine metagenome; seawater
145
215
+
Gly
CCC
[ENA]
¢þ
>WENV181322361
OFKQ01015491
[OFKQ] marine metagenome; seawater
152
68
-
Leu
TAG
[ENA]
¢þ
>WENV181322350
OFKQ01009816
[OFKQ] marine metagenome; seawater
162
238
+
Met
CAT
[ENA]
¢þ
>WENV181322310
OFKQ01001940
[OFKQ] marine metagenome; seawater
169
245
+
Arg
CCT
[ENA]
¢þ
>WENV181322300
OFKQ01001043
[OFKQ] marine metagenome; seawater
176
104
-
Glu
CTC
[ENA]
¢þ
>WENV181322336
OFKQ01005975
[OFKQ] marine metagenome; seawater
177
249
+
Val
TAC
[ENA]
¢þ
>WENV181322337
OFKQ01006113
[OFKQ] marine metagenome; seawater
183
107
-
Pro
TGG
[ENA]
¢þ
>WENV181322328
OFKQ01005153
[OFKQ] marine metagenome; seawater
188
259
+
Cys
GCA
[ENA]
¢þ
>WENV181322341
OFKQ01006606
[OFKQ] marine metagenome; seawater
188
265
+
Glu
TTC
[ENA]
¢þ
>WENV181322321
OFKQ01003571
[OFKQ] marine metagenome; seawater
192
117
-
Met
CAT
[ENA]
¢þ
>WENV181322326
OFKQ01004107
[OFKQ] marine metagenome; seawater
194
121
-
Asn
GTT
[ENA]
¢þ
>WENV181322354
OFKQ01012581
[OFKQ] marine metagenome; seawater
194
123
-
Lys
TTT
[ENA]
¢þ
>WENV181322363
OFKQ01016975
[OFKQ] marine metagenome; seawater
207
132
-
Asp
GTC
[ENA]
¢þ
>WENV181322344
OFKQ01007541
[OFKQ] marine metagenome; seawater
213
285
+
Arg
TCG
[ENA]
¢þ
>WENV181322366
OFKQ01017574
[OFKQ] marine metagenome; seawater
214
128
-
Leu
CAG
[ENA]
¢þ
>WENV181322367
OFKQ01017693
[OFKQ] marine metagenome; seawater
221
306
+
Ser
GGA
[ENA]
¢þ
>WENV181322343
OFKQ01007385
[OFKQ] marine metagenome; seawater
254
178
-
Ile2
CAT
[ENA]
¢þ
>WENV181322315
OFKQ01002296
[OFKQ] marine metagenome; seawater
262
337
+
Val
TAC
[ENA]
¢þ
>WENV181322370
OFKQ01019696
[OFKQ] marine metagenome; seawater
288
362
+
Pro
CGG
[ENA]
¢þ
>WENV181322285
OFKQ01000305
[OFKQ] marine metagenome; seawater
293
364
+
Lys
TTT
[ENA]
¢þ
>WENV181322329
OFKQ01005576
[OFKQ] marine metagenome; seawater
293
369
+
Arg
TCT
[ENA]
¢þ
>WENV181322313
OFKQ01002239
[OFKQ] marine metagenome; seawater
295
220
-
His
GTG
[ENA]
¢þ
>WENV181322318
OFKQ01002493
[OFKQ] marine metagenome; seawater
298
388
+
Ser
TGA
[ENA]
¢þ
>WENV181322355
OFKQ01013096
[OFKQ] marine metagenome; seawater
318
393
+
Thr
TGT
[ENA]
¢þ
>WENV181322304
OFKQ01001588
[OFKQ] marine metagenome; seawater
325
397
+
Val
CAC
[ENA]
¢þ
>WENV181322351
OFKQ01010442
[OFKQ] marine metagenome; seawater
341
430
+
Ser
CGA
[ENA]
¢þ
>WENV181322353
OFKQ01011831
[OFKQ] marine metagenome; seawater
343
271
-
Gln
CTG
[ENA]
¢þ
>WENV181322342
OFKQ01007337
[OFKQ] marine metagenome; seawater
349
277
-
Gly
GCC
[ENA]
¢þ
>WENV181322362
OFKQ01016975
[OFKQ] marine metagenome; seawater
365
275
-
Ser
GCT
[ENA]
¢þ
>WENV181322320
OFKQ01003145
[OFKQ] marine metagenome; seawater
374
464
+
Ser
GCT
[ENA]
¢þ
>WENV181322369
OFKQ01018923
[OFKQ] marine metagenome; seawater
378
453
+
Trp
CCA
[ENA]
¢þ
>WENV181322322
OFKQ01003706
[OFKQ] marine metagenome; seawater
380
455
+
Thr
TGT
[ENA]
¢þ
>WENV181322345
OFKQ01007541
[OFKQ] marine metagenome; seawater
381
462
+
Leu
CAA
[ENA]
¢þ
>WENV181322340
OFKQ01006601
[OFKQ] marine metagenome; seawater
384
469
+
Leu
CAG
[ENA]
¢þ
>WENV181322335
OFKQ01005951
[OFKQ] marine metagenome; seawater
388
308
-
Leu
CAG
[ENA]
¢þ
>WENV181322333
OFKQ01005818
[OFKQ] marine metagenome; seawater
402
478
+
Pro
GGG
[ENA]
¢þ
>WENV181322349
OFKQ01008345
[OFKQ] marine metagenome; seawater
404
329
-
Pro
TGG
[ENA]
¢þ
>WENV181322332
OFKQ01005753
[OFKQ] marine metagenome; seawater
424
349
-
Thr
GGT
[ENA]
¢þ
>WENV181322356
OFKQ01013254
[OFKQ] marine metagenome; seawater
437
351
-
Leu
GAG
[ENA]
¢þ
>WENV181322303
OFKQ01001519
[OFKQ] marine metagenome; seawater
439
363
-
Arg
TCG
[ENA]
¢þ
>WENV181322347
OFKQ01007629
[OFKQ] marine metagenome; seawater
455
371
-
Leu
TAG
[ENA]
¢þ
>WENV181322357
OFKQ01013883
[OFKQ] marine metagenome; seawater
466
390
-
Asp
GTC
[ENA]
¢þ
>WENV181322312
OFKQ01002229
[OFKQ] marine metagenome; seawater
482
556
+
Thr
GGT
[ENA]
¢þ
>WENV181322339
OFKQ01006260
[OFKQ] marine metagenome; seawater
496
424
-
Glu
CTC
[ENA]
¢þ
>WENV181322319
OFKQ01002493
[OFKQ] marine metagenome; seawater
496
571
+
Lys
TTT
[ENA]
¢þ
>WENV181322314
OFKQ01002266
[OFKQ] marine metagenome; seawater
501
577
+
Met
CAT
[ENA]
¢þ
>WENV181322308
OFKQ01001598
[OFKQ] marine metagenome; seawater
515
440
-
Asn
GTT
[ENA]
¢þ
>WENV181322348
OFKQ01008340
[OFKQ] marine metagenome; seawater
515
591
+
Pro
TGG
[ENA]
¢þ
>WENV181322331
OFKQ01005753
[OFKQ] marine metagenome; seawater
516
443
-
Gly
TCC
[ENA]
¢þ
>WENV181322324
OFKQ01003828
[OFKQ] marine metagenome; seawater
522
611
+
Ser
TGA
[ENA]
¢þ
>WENV181322309
OFKQ01001753
[OFKQ] marine metagenome; seawater
526
610
+
Leu
CAA
[ENA]
¢þ
>WENV181322323
OFKQ01003788
[OFKQ] marine metagenome; seawater
539
464
-
Ala
GGC
[ENA]
¢þ
>WENV181322311
OFKQ01002180
[OFKQ] marine metagenome; seawater
554
630
+
Ile2
CAT
[ENA]
¢þ
>WENV181322282
OFKQ01000150
[OFKQ] marine metagenome; seawater
571
489
-
Leu
TAG
[ENA]
¢þ
>WENV181322327
OFKQ01004131
[OFKQ] marine metagenome; seawater
583
508
-
Ile2
CAT
[ENA]
¢þ
>WENV181322296
OFKQ01000828
[OFKQ] marine metagenome; seawater
598
673
+
Gly
GCC
[ENA]
¢þ
>WENV181322325
OFKQ01004002
[OFKQ] marine metagenome; seawater
603
528
-
Glu
TTC
[ENA]
¢þ
>WENV181322306
OFKQ01001588
[OFKQ] marine metagenome; seawater
615
544
-
Asp
GTC
[ENA]
¢þ
>WENV181322299
OFKQ01000953
[OFKQ] marine metagenome; seawater
619
694
+
Gly
GCC
[ENA]
¢þ
>WENV181322330
OFKQ01005753
[OFKQ] marine metagenome; seawater
657
574
-
Tyr
GTA
[ENA]
¢þ
>WENV181322317
OFKQ01002332
[OFKQ] marine metagenome; seawater
661
589
-
Ala
TGC
[ENA]
¢þ
>WENV181322307
OFKQ01001598
[OFKQ] marine metagenome; seawater
677
750
+
Ala
CGC
[ENA]
¢þ
>WENV181322287
OFKQ01000467
[OFKQ] marine metagenome; seawater
680
609
-
Ala
AGC
[ENA]
¢þ
>WENV181322280
OFKQ01000092
[OFKQ] marine metagenome; seawater
682
758
+
Ile
GAT
[ENA]
¢þ
>WENV181322290
OFKQ01000484
[OFKQ] marine metagenome; seawater
706
631
-
Ala
TGC
[ENA]
¢þ
>WENV181322316
OFKQ01002332
[OFKQ] marine metagenome; seawater
750
663
-
Ser
GCT
[ENA]
¢þ
>WENV181322281
OFKQ01000092
[OFKQ] marine metagenome; seawater
770
845
+
Ala
TGC
[ENA]
¢þ
>WENV181322297
OFKQ01000902
[OFKQ] marine metagenome; seawater
786
858
+
Thr
TGT
[ENA]
¢þ
>WENV181322305
OFKQ01001588
[OFKQ] marine metagenome; seawater
822
751
-
His
GTG
[ENA]
¢þ
>WENV181322289
OFKQ01000484
[OFKQ] marine metagenome; seawater
832
756
-
Ile
GAT
[ENA]
¢þ
>WENV181322293
OFKQ01000755
[OFKQ] marine metagenome; seawater
834
761
-
Gly
TCC
[ENA]
¢þ
>WENV181322295
OFKQ01000824
[OFKQ] marine metagenome; seawater
871
947
+
fMet
CAT
[ENA]
¢þ
>WENV181322291
OFKQ01000531
[OFKQ] marine metagenome; seawater
943
1019
+
fMet
CAT
[ENA]
¢þ
>WENV181322286
OFKQ01000467
[OFKQ] marine metagenome; seawater
959
1033
+
Cys
GCA
[ENA]
¢þ
>WENV181322292
OFKQ01000755
[OFKQ] marine metagenome; seawater
966
881
-
Tyr
GTA
[ENA]
¢þ
>WENV181322298
OFKQ01000902
[OFKQ] marine metagenome; seawater
968
897
-
Trp
CCA
[ENA]
¢þ
>WENV181322301
OFKQ01001398
[OFKQ] marine metagenome; seawater
971
897
-
Gln
TTG
[ENA]
¢þ
>WENV181322288
OFKQ01000470
[OFKQ] marine metagenome; seawater
1007
931
-
Arg
ACG
[ENA]
¢þ
>WENV181322284
OFKQ01000182
[OFKQ] marine metagenome; seawater
1430
1356
-
Thr
GGT
[ENA]
¢þ
>WENV181322283
OFKQ01000182
[OFKQ] marine metagenome; seawater
1605
1521
-
Tyr
GTA
[ENA]
¢þ
>WENV181322279
OFKQ01000062
[OFKQ] marine metagenome; seawater
1744
1672
-
Ala
TGC
[ENA]
¢þ
>WENV181322278
OFKQ01000062
[OFKQ] marine metagenome; seawater
1824
1751
-
Ile
GAT
[ENA]
¢þ
>WENV181322274
OFKQ01000013
[OFKQ] marine metagenome; seawater
1840
1916
+
Ile
GAT
[ENA]
¢þ
>WENV181322275
OFKQ01000013
[OFKQ] marine metagenome; seawater
1930
2005
+
Ala
TGC
[ENA]
¢þ
>WENV181322277
OFKQ01000016
[OFKQ] marine metagenome; seawater
2185
2111
-
Ala
TGC
[ENA]
¢þ
>WENV181322276
OFKQ01000016
[OFKQ] marine metagenome; seawater
2356
2282
-
Ile
GAT
[ENA]
¢þ
>WENV181322273
OFKQ01000008
[OFKQ] marine metagenome; seawater
4497
4422
-
Ala
TGC
[ENA]
¢þ
>WENV181322272
OFKQ01000008
[OFKQ] marine metagenome; seawater
4595
4519
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK