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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFKT] marine metagenome; sea ice
HIT:
163 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181322682
OFKT01018319
[OFKT] marine metagenome; sea ice
1
85
+
Tyr
GTA
[ENA]
¢þ
>WENV181322662
OFKT01014520
[OFKT] marine metagenome; sea ice
7
80
+
Thr
CGT
[ENA]
¢þ
>WENV181322698
OFKT01031504
[OFKT] marine metagenome; sea ice
23
99
+
Arg
TCT
[ENA]
¢þ
>WENV181322660
OFKT01011758
[OFKT] marine metagenome; sea ice
24
100
+
Arg
TCT
[ENA]
¢þ
>WENV181322694
OFKT01027786
[OFKT] marine metagenome; sea ice
28
102
+
Tyr
GTA
[ENA]
¢þ
>WENV181322653
OFKT01010414
[OFKT] marine metagenome; sea ice
56
127
+
Gly
TCC
[ENA]
¢þ
>WENV181322591
OFKT01003338
[OFKT] marine metagenome; sea ice
60
132
+
Val
AAC
[ENA]
¢þ
>WENV181322607
OFKT01004636
[OFKT] marine metagenome; sea ice
77
151
+
Lys
TTT
[ENA]
¢þ
>WENV181322650
OFKT01009796
[OFKT] marine metagenome; sea ice
79
152
+
Leu
TAG
[ENA]
¢þ
>WENV181322644
OFKT01008841
[OFKT] marine metagenome; sea ice
86
13
-
Cys
GCA
[ENA]
¢þ
>WENV181322676
OFKT01017126
[OFKT] marine metagenome; sea ice
86
170
+
Tyr
GTA
[ENA]
¢þ
>WENV181322612
OFKT01005209
[OFKT] marine metagenome; sea ice
93
4
-
Ser
TGA
[ENA]
¢þ
>WENV181322685
OFKT01019672
[OFKT] marine metagenome; sea ice
96
170
+
Met
CAT
[ENA]
¢þ
>WENV181322568
OFKT01001253
[OFKT] marine metagenome; sea ice
101
29
-
Arg
TCT
[ENA]
¢þ
>WENV181322552
OFKT01000425
[OFKT] marine metagenome; sea ice
101
176
+
Ala
TGC
[ENA]
¢þ
>WENV181322687
OFKT01021506
[OFKT] marine metagenome; sea ice
103
178
+
Asn
GTT
[ENA]
¢þ
>WENV181322603
OFKT01004156
[OFKT] marine metagenome; sea ice
120
47
-
Ile
TAT
[ENA]
¢þ
>WENV181322680
OFKT01018184
[OFKT] marine metagenome; sea ice
130
53
-
Met
CAT
[ENA]
¢þ
>WENV181322671
OFKT01015773
[OFKT] marine metagenome; sea ice
132
60
-
Gln
CTG
[ENA]
¢þ
>WENV181322634
OFKT01007612
[OFKT] marine metagenome; sea ice
139
213
+
Pro
GGG
[ENA]
¢þ
>WENV181322681
OFKT01018212
[OFKT] marine metagenome; sea ice
142
228
+
Leu
CAG
[ENA]
¢þ
>WENV181322609
OFKT01004929
[OFKT] marine metagenome; sea ice
157
85
-
Cys
GCA
[ENA]
¢þ
>WENV181322652
OFKT01010324
[OFKT] marine metagenome; sea ice
157
233
+
Arg
CCG
[ENA]
¢þ
>WENV181322669
OFKT01015525
[OFKT] marine metagenome; sea ice
160
86
-
Pro
TGG
[ENA]
¢þ
>WENV181322578
OFKT01001632
[OFKT] marine metagenome; sea ice
162
91
-
Lys
TTT
[ENA]
¢þ
>WENV181322648
OFKT01009510
[OFKT] marine metagenome; sea ice
164
69
-
SeC
TCA
[ENA]
¢þ
>WENV181322611
OFKT01005145
[OFKT] marine metagenome; sea ice
167
251
+
Tyr
GTA
[ENA]
¢þ
>WENV181322670
OFKT01015729
[OFKT] marine metagenome; sea ice
173
98
-
Ala
GGC
[ENA]
¢þ
>WENV181322658
OFKT01010687
[OFKT] marine metagenome; sea ice
181
257
+
His
GTG
[ENA]
¢þ
>WENV181322701
OFKT01032552
[OFKT] marine metagenome; sea ice
187
273
+
Leu
CAA
[ENA]
¢þ
>WENV181322688
OFKT01022989
[OFKT] marine metagenome; sea ice
190
263
+
Ile
TAT
[ENA]
¢þ
>WENV181322677
OFKT01017485
[OFKT] marine metagenome; sea ice
190
265
+
Glu
TTC
[ENA]
¢þ
>WENV181322690
OFKT01023957
[OFKT] marine metagenome; sea ice
197
121
-
Ile2
CAT
[ENA]
¢þ
>WENV181322639
OFKT01008325
[OFKT] marine metagenome; sea ice
198
122
-
Asp
GTC
[ENA]
¢þ
>WENV181322558
OFKT01000982
[OFKT] marine metagenome; sea ice
198
123
-
Trp
CCA
[ENA]
¢þ
>WENV181322633
OFKT01007395
[OFKT] marine metagenome; sea ice
200
125
-
Phe
GAA
[ENA]
¢þ
>WENV181322659
OFKT01010712
[OFKT] marine metagenome; sea ice
200
273
+
Gly
CCC
[ENA]
¢þ
>WENV181322702
OFKT01032647
[OFKT] marine metagenome; sea ice
213
140
-
Cys
GCA
[ENA]
¢þ
>WENV181322679
OFKT01018184
[OFKT] marine metagenome; sea ice
214
137
-
Arg
TCT
[ENA]
¢þ
>WENV181322629
OFKT01007274
[OFKT] marine metagenome; sea ice
214
139
-
Glu
TTC
[ENA]
¢þ
>WENV181322696
OFKT01028229
[OFKT] marine metagenome; sea ice
214
142
-
Trp
CCA
[ENA]
¢þ
>WENV181322554
OFKT01000532
[OFKT] marine metagenome; sea ice
219
128
-
Ser
GCT
[ENA]
¢þ
>WENV181322615
OFKT01005438
[OFKT] marine metagenome; sea ice
225
298
+
Ala
CGC
[ENA]
¢þ
>WENV181322643
OFKT01008841
[OFKT] marine metagenome; sea ice
233
158
-
Gly
GCC
[ENA]
¢þ
>WENV181322668
OFKT01015525
[OFKT] marine metagenome; sea ice
233
306
+
Gly
TCC
[ENA]
¢þ
>WENV181322630
OFKT01007320
[OFKT] marine metagenome; sea ice
240
312
+
Arg
TCG
[ENA]
¢þ
>WENV181322586
OFKT01003051
[OFKT] marine metagenome; sea ice
241
166
-
Ala
TGC
[ENA]
¢þ
>WENV181322675
OFKT01016406
[OFKT] marine metagenome; sea ice
243
318
+
Val
CAC
[ENA]
¢þ
>WENV181322547
OFKT01000233
[OFKT] marine metagenome; sea ice
248
172
-
Lys
TTT
[ENA]
¢þ
>WENV181322666
OFKT01014990
[OFKT] marine metagenome; sea ice
249
321
+
Arg
CCT
[ENA]
¢þ
>WENV181322593
OFKT01003346
[OFKT] marine metagenome; sea ice
251
177
-
Gln
CTG
[ENA]
¢þ
>WENV181322637
OFKT01007939
[OFKT] marine metagenome; sea ice
252
163
-
Ser
GCT
[ENA]
¢þ
>WENV181322605
OFKT01004362
[OFKT] marine metagenome; sea ice
253
181
-
Asp
GTC
[ENA]
¢þ
>WENV181322654
OFKT01010414
[OFKT] marine metagenome; sea ice
256
334
+
Arg
TCT
[ENA]
¢þ
>WENV181322703
OFKT01033771
[OFKT] marine metagenome; sea ice
259
333
+
Pro
GGG
[ENA]
¢þ
>WENV181322684
OFKT01019616
[OFKT] marine metagenome; sea ice
281
353
+
Arg
CCT
[ENA]
¢þ
>WENV181322692
OFKT01026025
[OFKT] marine metagenome; sea ice
282
206
-
Arg
CCG
[ENA]
¢þ
>WENV181322577
OFKT01001507
[OFKT] marine metagenome; sea ice
287
214
-
Thr
TGT
[ENA]
¢þ
>WENV181322678
OFKT01017485
[OFKT] marine metagenome; sea ice
289
363
+
Asp
GTC
[ENA]
¢þ
>WENV181322697
OFKT01028976
[OFKT] marine metagenome; sea ice
289
364
+
Ala
GGC
[ENA]
¢þ
>WENV181322582
OFKT01002655
[OFKT] marine metagenome; sea ice
311
386
+
Pro
TGG
[ENA]
¢þ
>WENV181322663
OFKT01014587
[OFKT] marine metagenome; sea ice
315
241
-
Phe
GAA
[ENA]
¢þ
>WENV181322672
OFKT01015801
[OFKT] marine metagenome; sea ice
319
236
-
Ser
AGA
[ENA]
¢þ
>WENV181322691
OFKT01025816
[OFKT] marine metagenome; sea ice
323
250
-
Val
AAC
[ENA]
¢þ
>WENV181322635
OFKT01007692
[OFKT] marine metagenome; sea ice
326
401
+
fMet
CAT
[ENA]
¢þ
>WENV181322695
OFKT01027963
[OFKT] marine metagenome; sea ice
329
256
-
Thr
AGT
[ENA]
¢þ
>WENV181322544
OFKT01000104
[OFKT] marine metagenome; sea ice
333
250
-
Ser
CGA
[ENA]
¢þ
>WENV181322699
OFKT01031935
[OFKT] marine metagenome; sea ice
333
258
-
Phe
GAA
[ENA]
¢þ
>WENV181322655
OFKT01010414
[OFKT] marine metagenome; sea ice
333
406
+
Pro
TGG
[ENA]
¢þ
>WENV181322689
OFKT01023351
[OFKT] marine metagenome; sea ice
336
262
-
Gln
TTG
[ENA]
¢þ
>WENV181322628
OFKT01007274
[OFKT] marine metagenome; sea ice
337
262
-
Gly
GCC
[ENA]
¢þ
>WENV181322683
OFKT01018978
[OFKT] marine metagenome; sea ice
338
264
-
Gly
GCC
[ENA]
¢þ
>WENV181322638
OFKT01008325
[OFKT] marine metagenome; sea ice
340
265
-
Val
TAC
[ENA]
¢þ
>WENV181322598
OFKT01003676
[OFKT] marine metagenome; sea ice
345
429
+
Leu
TAG
[ENA]
¢þ
>WENV181322624
OFKT01007109
[OFKT] marine metagenome; sea ice
346
269
-
Val
TAC
[ENA]
¢þ
>WENV181322625
OFKT01007157
[OFKT] marine metagenome; sea ice
350
422
+
Ile
TAT
[ENA]
¢þ
>WENV181322664
OFKT01014687
[OFKT] marine metagenome; sea ice
351
276
-
His
GTG
[ENA]
¢þ
>WENV181322585
OFKT01003051
[OFKT] marine metagenome; sea ice
357
281
-
Ile
GAT
[ENA]
¢þ
>WENV181322657
OFKT01010660
[OFKT] marine metagenome; sea ice
357
433
+
Pro
TGG
[ENA]
¢þ
>WENV181322649
OFKT01009635
[OFKT] marine metagenome; sea ice
359
435
+
Ile2
CAT
[ENA]
¢þ
>WENV181322665
OFKT01014695
[OFKT] marine metagenome; sea ice
370
441
+
Trp
CCA
[ENA]
¢þ
>WENV181322608
OFKT01004929
[OFKT] marine metagenome; sea ice
372
447
+
Thr
CGT
[ENA]
¢þ
>WENV181322674
OFKT01016274
[OFKT] marine metagenome; sea ice
373
302
-
Pro
TGG
[ENA]
¢þ
>WENV181322610
OFKT01005138
[OFKT] marine metagenome; sea ice
376
303
-
fMet
CAT
[ENA]
¢þ
>WENV181322645
OFKT01009018
[OFKT] marine metagenome; sea ice
394
318
-
Pro
CGG
[ENA]
¢þ
>WENV181322686
OFKT01020424
[OFKT] marine metagenome; sea ice
394
482
+
Leu
TAA
[ENA]
¢þ
>WENV181322693
OFKT01027186
[OFKT] marine metagenome; sea ice
407
331
-
fMet
CAT
[ENA]
¢þ
>WENV181322601
OFKT01004105
[OFKT] marine metagenome; sea ice
408
482
+
Phe
GAA
[ENA]
¢þ
>WENV181322646
OFKT01009294
[OFKT] marine metagenome; sea ice
413
486
+
Glu
TTC
[ENA]
¢þ
>WENV181322661
OFKT01014316
[OFKT] marine metagenome; sea ice
418
344
-
Val
AAC
[ENA]
¢þ
>WENV181322631
OFKT01007359
[OFKT] marine metagenome; sea ice
424
340
-
Leu
CAA
[ENA]
¢þ
>WENV181322600
OFKT01003912
[OFKT] marine metagenome; sea ice
428
506
+
Leu
AAG
[ENA]
¢þ
>WENV181322592
OFKT01003338
[OFKT] marine metagenome; sea ice
429
358
-
Pro
CGG
[ENA]
¢þ
>WENV181322595
OFKT01003387
[OFKT] marine metagenome; sea ice
436
360
-
Met
CAT
[ENA]
¢þ
>WENV181322700
OFKT01032090
[OFKT] marine metagenome; sea ice
438
364
-
Asn
GTT
[ENA]
¢þ
>WENV181322621
OFKT01005979
[OFKT] marine metagenome; sea ice
439
365
-
Arg
CCT
[ENA]
¢þ
>WENV181322627
OFKT01007274
[OFKT] marine metagenome; sea ice
447
372
-
Glu
TTC
[ENA]
¢þ
>WENV181322656
OFKT01010447
[OFKT] marine metagenome; sea ice
466
556
+
Ser
TGA
[ENA]
¢þ
>WENV181322667
OFKT01015394
[OFKT] marine metagenome; sea ice
468
540
+
Thr
CGT
[ENA]
¢þ
>WENV181322618
OFKT01005626
[OFKT] marine metagenome; sea ice
483
393
-
Ser
GGA
[ENA]
¢þ
>WENV181322584
OFKT01003051
[OFKT] marine metagenome; sea ice
484
409
-
Ala
TGC
[ENA]
¢þ
>WENV181322640
OFKT01008342
[OFKT] marine metagenome; sea ice
485
559
+
Arg
CCG
[ENA]
¢þ
>WENV181322574
OFKT01001500
[OFKT] marine metagenome; sea ice
486
559
+
Asp
GTC
[ENA]
¢þ
>WENV181322588
OFKT01003172
[OFKT] marine metagenome; sea ice
488
417
-
Ala
CGC
[ENA]
¢þ
>WENV181322573
OFKT01001405
[OFKT] marine metagenome; sea ice
506
587
+
Leu
TAG
[ENA]
¢þ
>WENV181322590
OFKT01003221
[OFKT] marine metagenome; sea ice
514
442
-
Ala
TGC
[ENA]
¢þ
>WENV181322557
OFKT01000948
[OFKT] marine metagenome; sea ice
526
599
+
Trp
CCA
[ENA]
¢þ
>WENV181322641
OFKT01008508
[OFKT] marine metagenome; sea ice
541
457
-
Leu
TAG
[ENA]
¢þ
>WENV181322597
OFKT01003638
[OFKT] marine metagenome; sea ice
548
476
-
Lys
CTT
[ENA]
¢þ
>WENV181322561
OFKT01001209
[OFKT] marine metagenome; sea ice
551
626
+
Thr
TGT
[ENA]
¢þ
>WENV181322623
OFKT01006448
[OFKT] marine metagenome; sea ice
556
627
+
Asp
GTC
[ENA]
¢þ
>WENV181322619
OFKT01005658
[OFKT] marine metagenome; sea ice
557
485
-
Met
CAT
[ENA]
¢þ
>WENV181322572
OFKT01001287
[OFKT] marine metagenome; sea ice
563
487
-
Asp
GTC
[ENA]
¢þ
>WENV181322626
OFKT01007250
[OFKT] marine metagenome; sea ice
563
644
+
Ser
CGA
[ENA]
¢þ
>WENV181322559
OFKT01001111
[OFKT] marine metagenome; sea ice
564
493
-
Trp
CCA
[ENA]
¢þ
>WENV181322651
OFKT01010248
[OFKT] marine metagenome; sea ice
575
496
-
Leu
AAG
[ENA]
¢þ
>WENV181322642
OFKT01008609
[OFKT] marine metagenome; sea ice
576
665
+
Ser
CGA
[ENA]
¢þ
>WENV181322673
OFKT01016274
[OFKT] marine metagenome; sea ice
579
507
-
Pro
CGG
[ENA]
¢þ
>WENV181322647
OFKT01009417
[OFKT] marine metagenome; sea ice
580
499
-
Leu
CAA
[ENA]
¢þ
>WENV181322622
OFKT01006073
[OFKT] marine metagenome; sea ice
583
508
-
Gln
TTG
[ENA]
¢þ
>WENV181322589
OFKT01003221
[OFKT] marine metagenome; sea ice
594
521
-
Ile
GAT
[ENA]
¢þ
>WENV181322551
OFKT01000282
[OFKT] marine metagenome; sea ice
594
669
+
Phe
GAA
[ENA]
¢þ
>WENV181322632
OFKT01007370
[OFKT] marine metagenome; sea ice
598
674
+
Val
GAC
[ENA]
¢þ
>WENV181322583
OFKT01002798
[OFKT] marine metagenome; sea ice
621
714
+
Ser
GCT
[ENA]
¢þ
>WENV181322599
OFKT01003881
[OFKT] marine metagenome; sea ice
624
552
-
Gly
CCC
[ENA]
¢þ
>WENV181322620
OFKT01005916
[OFKT] marine metagenome; sea ice
626
551
-
Asn
GTT
[ENA]
¢þ
>WENV181322616
OFKT01005604
[OFKT] marine metagenome; sea ice
628
701
+
Gly
CCC
[ENA]
¢þ
>WENV181322614
OFKT01005301
[OFKT] marine metagenome; sea ice
635
710
+
Asn
GTT
[ENA]
¢þ
>WENV181322617
OFKT01005626
[OFKT] marine metagenome; sea ice
668
579
-
Ser
CGA
[ENA]
¢þ
>WENV181322636
OFKT01007824
[OFKT] marine metagenome; sea ice
669
583
-
Leu
CAG
[ENA]
¢þ
>WENV181322576
OFKT01001500
[OFKT] marine metagenome; sea ice
685
614
-
Trp
CCA
[ENA]
¢þ
>WENV181322571
OFKT01001287
[OFKT] marine metagenome; sea ice
692
617
-
Glu
TTC
[ENA]
¢þ
>WENV181322587
OFKT01003172
[OFKT] marine metagenome; sea ice
695
612
-
Ser
GCT
[ENA]
¢þ
>WENV181322562
OFKT01001209
[OFKT] marine metagenome; sea ice
704
787
+
Tyr
GTA
[ENA]
¢þ
>WENV181322594
OFKT01003381
[OFKT] marine metagenome; sea ice
734
806
+
Glu
CTC
[ENA]
¢þ
>WENV181322549
OFKT01000261
[OFKT] marine metagenome; sea ice
751
678
-
Gly
CCC
[ENA]
¢þ
>WENV181322569
OFKT01001262
[OFKT] marine metagenome; sea ice
765
841
+
Arg
ACG
[ENA]
¢þ
>WENV181322613
OFKT01005210
[OFKT] marine metagenome; sea ice
771
696
-
Asn
GTT
[ENA]
¢þ
>WENV181322575
OFKT01001500
[OFKT] marine metagenome; sea ice
776
702
-
Arg
CCG
[ENA]
¢þ
>WENV181322604
OFKT01004255
[OFKT] marine metagenome; sea ice
796
870
+
Gln
TTG
[ENA]
¢þ
>WENV181322606
OFKT01004396
[OFKT] marine metagenome; sea ice
798
725
-
Sup
TTA
[ENA]
¢þ
>WENV181322602
OFKT01004154
[OFKT] marine metagenome; sea ice
803
730
-
Thr
TGT
[ENA]
¢þ
>WENV181322596
OFKT01003638
[OFKT] marine metagenome; sea ice
804
874
+
Gly
GCC
[ENA]
¢þ
>WENV181322581
OFKT01001922
[OFKT] marine metagenome; sea ice
811
725
-
Leu
TAG
[ENA]
¢þ
>WENV181322565
OFKT01001218
[OFKT] marine metagenome; sea ice
846
928
+
Leu
CAA
[ENA]
¢þ
>WENV181322570
OFKT01001287
[OFKT] marine metagenome; sea ice
860
785
-
Ala
GGC
[ENA]
¢þ
>WENV181322563
OFKT01001209
[OFKT] marine metagenome; sea ice
866
939
+
Gly
TCC
[ENA]
¢þ
>WENV181322579
OFKT01001664
[OFKT] marine metagenome; sea ice
919
993
+
Arg
ACG
[ENA]
¢þ
>WENV181322543
OFKT01000104
[OFKT] marine metagenome; sea ice
926
845
-
Ser
GCT
[ENA]
¢þ
>WENV181322564
OFKT01001209
[OFKT] marine metagenome; sea ice
987
1062
+
Thr
GGT
[ENA]
¢þ
>WENV181322567
OFKT01001253
[OFKT] marine metagenome; sea ice
1012
929
-
Leu
CAA
[ENA]
¢þ
>WENV181322566
OFKT01001236
[OFKT] marine metagenome; sea ice
1026
952
-
Thr
AGT
[ENA]
¢þ
>WENV181322560
OFKT01001131
[OFKT] marine metagenome; sea ice
1082
1155
+
Arg
CCT
[ENA]
¢þ
>WENV181322580
OFKT01001788
[OFKT] marine metagenome; sea ice
1135
1059
-
Met
CAT
[ENA]
¢þ
>WENV181322556
OFKT01000694
[OFKT] marine metagenome; sea ice
1277
1202
-
Asn
GTT
[ENA]
¢þ
>WENV181322545
OFKT01000197
[OFKT] marine metagenome; sea ice
1451
1523
+
Met
CAT
[ENA]
¢þ
>WENV181322548
OFKT01000255
[OFKT] marine metagenome; sea ice
1462
1536
+
Gln
TTG
[ENA]
¢þ
>WENV181322546
OFKT01000233
[OFKT] marine metagenome; sea ice
1542
1468
-
Lys
TTT
[ENA]
¢þ
>WENV181322553
OFKT01000455
[OFKT] marine metagenome; sea ice
1670
1595
-
Ala
TGC
[ENA]
¢þ
>WENV181322555
OFKT01000567
[OFKT] marine metagenome; sea ice
1705
1630
-
Ala
TGC
[ENA]
¢þ
>WENV181322550
OFKT01000262
[OFKT] marine metagenome; sea ice
2238
2314
+
Ile
GAT
[ENA]
¢þ
>WENV181322542
OFKT01000037
[OFKT] marine metagenome; sea ice
3716
3642
-
Ala
TGC
[ENA]
¢þ
>WENV181322541
OFKT01000037
[OFKT] marine metagenome; sea ice
3893
3819
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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