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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFKV] marine metagenome; sea ice
HIT:
138 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181322900
OFKV01011230
[OFKV] marine metagenome; sea ice
5
80
+
Gln
TTG
[ENA]
¢þ
>WENV181322890
OFKV01007902
[OFKV] marine metagenome; sea ice
30
104
+
Phe
GAA
[ENA]
¢þ
>WENV181322867
OFKV01004018
[OFKV] marine metagenome; sea ice
34
117
+
Leu
TAA
[ENA]
¢þ
>WENV181322955
OFKV01037759
[OFKV] marine metagenome; sea ice
49
122
+
Gln
CTG
[ENA]
¢þ
>WENV181322889
OFKV01007884
[OFKV] marine metagenome; sea ice
56
131
+
Asn
GTT
[ENA]
¢þ
>WENV181322847
OFKV01001694
[OFKV] marine metagenome; sea ice
79
155
+
Asp
GTC
[ENA]
¢þ
>WENV181322858
OFKV01002631
[OFKV] marine metagenome; sea ice
83
9
-
Asn
GTT
[ENA]
¢þ
>WENV181322918
OFKV01016715
[OFKV] marine metagenome; sea ice
88
14
-
Lys
TTT
[ENA]
¢þ
>WENV181322888
OFKV01007555
[OFKV] marine metagenome; sea ice
89
163
+
Gln
TTG
[ENA]
¢þ
>WENV181322944
OFKV01030120
[OFKV] marine metagenome; sea ice
91
164
+
Ile
GAT
[ENA]
¢þ
>WENV181322911
OFKV01015434
[OFKV] marine metagenome; sea ice
94
165
+
Thr
TGT
[ENA]
¢þ
>WENV181322962
OFKV01041653
[OFKV] marine metagenome; sea ice
99
174
+
Thr
CGT
[ENA]
¢þ
>WENV181322846
OFKV01001569
[OFKV] marine metagenome; sea ice
109
33
-
Pro
GGG
[ENA]
¢þ
>WENV181322886
OFKV01006433
[OFKV] marine metagenome; sea ice
110
184
+
Gln
TTG
[ENA]
¢þ
>WENV181322925
OFKV01018384
[OFKV] marine metagenome; sea ice
122
197
+
Val
TAC
[ENA]
¢þ
>WENV181322895
OFKV01009406
[OFKV] marine metagenome; sea ice
134
207
+
His
GTG
[ENA]
¢þ
>WENV181322932
OFKV01020966
[OFKV] marine metagenome; sea ice
135
211
+
fMet
CAT
[ENA]
¢þ
>WENV181322951
OFKV01033626
[OFKV] marine metagenome; sea ice
144
69
-
Val
GAC
[ENA]
¢þ
>WENV181322907
OFKV01013714
[OFKV] marine metagenome; sea ice
146
70
-
Ile
GAT
[ENA]
¢þ
>WENV181322926
OFKV01018561
[OFKV] marine metagenome; sea ice
148
233
+
Ser
GGA
[ENA]
¢þ
>WENV181322931
OFKV01020402
[OFKV] marine metagenome; sea ice
149
230
+
Leu
TAG
[ENA]
¢þ
>WENV181322961
OFKV01041074
[OFKV] marine metagenome; sea ice
158
83
-
Gly
GCC
[ENA]
¢þ
>WENV181322946
OFKV01030602
[OFKV] marine metagenome; sea ice
162
87
-
Glu
TTC
[ENA]
¢þ
>WENV181322924
OFKV01017366
[OFKV] marine metagenome; sea ice
169
93
-
Pro
TGG
[ENA]
¢þ
>WENV181322960
OFKV01040785
[OFKV] marine metagenome; sea ice
172
85
-
Ser
TGA
[ENA]
¢þ
>WENV181322954
OFKV01034294
[OFKV] marine metagenome; sea ice
186
262
+
Arg
CCT
[ENA]
¢þ
>WENV181322917
OFKV01016715
[OFKV] marine metagenome; sea ice
193
264
+
Pro
AGG
[ENA]
¢þ
>WENV181322879
OFKV01005547
[OFKV] marine metagenome; sea ice
196
270
+
Arg
CCG
[ENA]
¢þ
>WENV181322884
OFKV01006027
[OFKV] marine metagenome; sea ice
212
286
+
Val
CAC
[ENA]
¢þ
>WENV181322899
OFKV01011213
[OFKV] marine metagenome; sea ice
213
140
-
Ile
GAT
[ENA]
¢þ
>WENV181322852
OFKV01002129
[OFKV] marine metagenome; sea ice
221
134
-
Leu
AAG
[ENA]
¢þ
>WENV181322952
OFKV01034273
[OFKV] marine metagenome; sea ice
225
300
+
Lys
TTT
[ENA]
¢þ
>WENV181322861
OFKV01002853
[OFKV] marine metagenome; sea ice
230
306
+
Asp
GTC
[ENA]
¢þ
>WENV181322938
OFKV01025954
[OFKV] marine metagenome; sea ice
244
169
-
Glu
TTC
[ENA]
¢þ
>WENV181322912
OFKV01015434
[OFKV] marine metagenome; sea ice
254
182
-
Lys
TTT
[ENA]
¢þ
>WENV181322902
OFKV01012006
[OFKV] marine metagenome; sea ice
255
329
+
Ile
AAT
[ENA]
¢þ
>WENV181322941
OFKV01027282
[OFKV] marine metagenome; sea ice
260
332
+
Phe
GAA
[ENA]
¢þ
>WENV181322909
OFKV01014053
[OFKV] marine metagenome; sea ice
267
193
-
Arg
CCG
[ENA]
¢þ
>WENV181322936
OFKV01025373
[OFKV] marine metagenome; sea ice
277
202
-
Lys
TTT
[ENA]
¢þ
>WENV181322919
OFKV01017284
[OFKV] marine metagenome; sea ice
295
219
-
Arg
ACG
[ENA]
¢þ
>WENV181322947
OFKV01031349
[OFKV] marine metagenome; sea ice
295
366
+
Asp
GTC
[ENA]
¢þ
>WENV181322923
OFKV01017366
[OFKV] marine metagenome; sea ice
296
212
-
Leu
TAG
[ENA]
¢þ
>WENV181322881
OFKV01005902
[OFKV] marine metagenome; sea ice
299
224
-
Ala
GGC
[ENA]
¢þ
>WENV181322948
OFKV01031721
[OFKV] marine metagenome; sea ice
307
233
-
Arg
TCT
[ENA]
¢þ
>WENV181322913
OFKV01015882
[OFKV] marine metagenome; sea ice
309
237
-
Glu
CTC
[ENA]
¢þ
>WENV181322957
OFKV01037867
[OFKV] marine metagenome; sea ice
311
232
-
Leu
AAG
[ENA]
¢þ
>WENV181322898
OFKV01011030
[OFKV] marine metagenome; sea ice
313
237
-
Arg
CCG
[ENA]
¢þ
>WENV181322906
OFKV01013302
[OFKV] marine metagenome; sea ice
323
236
-
Ser
TGA
[ENA]
¢þ
>WENV181322937
OFKV01025954
[OFKV] marine metagenome; sea ice
325
250
-
Ala
GGC
[ENA]
¢þ
>WENV181322956
OFKV01037841
[OFKV] marine metagenome; sea ice
331
256
-
Glu
TTC
[ENA]
¢þ
>WENV181322910
OFKV01014629
[OFKV] marine metagenome; sea ice
337
408
+
Pro
CGG
[ENA]
¢þ
>WENV181322950
OFKV01033582
[OFKV] marine metagenome; sea ice
341
428
+
Ser
TGA
[ENA]
¢þ
>WENV181322914
OFKV01016194
[OFKV] marine metagenome; sea ice
347
423
+
Glu
TTC
[ENA]
¢þ
>WENV181322851
OFKV01002121
[OFKV] marine metagenome; sea ice
352
427
+
Ala
GGC
[ENA]
¢þ
>WENV181322953
OFKV01034273
[OFKV] marine metagenome; sea ice
367
442
+
Lys
TTT
[ENA]
¢þ
>WENV181322933
OFKV01021299
[OFKV] marine metagenome; sea ice
377
450
+
Lys
TTT
[ENA]
¢þ
>WENV181322922
OFKV01017366
[OFKV] marine metagenome; sea ice
379
304
-
His
GTG
[ENA]
¢þ
>WENV181322959
OFKV01038514
[OFKV] marine metagenome; sea ice
380
305
-
Thr
TGT
[ENA]
¢þ
>WENV181322945
OFKV01030602
[OFKV] marine metagenome; sea ice
384
309
-
Glu
TTC
[ENA]
¢þ
>WENV181322915
OFKV01016486
[OFKV] marine metagenome; sea ice
387
475
+
Ser
GCT
[ENA]
¢þ
>WENV181322935
OFKV01024637
[OFKV] marine metagenome; sea ice
390
465
+
Ala
GGC
[ENA]
¢þ
>WENV181322958
OFKV01038443
[OFKV] marine metagenome; sea ice
398
484
+
Leu
CAA
[ENA]
¢þ
>WENV181322930
OFKV01020317
[OFKV] marine metagenome; sea ice
404
328
-
fMet
CAT
[ENA]
¢þ
>WENV181322874
OFKV01004884
[OFKV] marine metagenome; sea ice
407
496
+
Ser
GCT
[ENA]
¢þ
>WENV181322934
OFKV01023945
[OFKV] marine metagenome; sea ice
430
503
+
Asn
GTT
[ENA]
¢þ
>WENV181322943
OFKV01029060
[OFKV] marine metagenome; sea ice
430
505
+
Lys
TTT
[ENA]
¢þ
>WENV181322873
OFKV01004663
[OFKV] marine metagenome; sea ice
432
349
-
Tyr
GTA
[ENA]
¢þ
>WENV181322864
OFKV01003581
[OFKV] marine metagenome; sea ice
432
506
+
Gly
GCC
[ENA]
¢þ
>WENV181322942
OFKV01028135
[OFKV] marine metagenome; sea ice
439
355
-
Ser
GCT
[ENA]
¢þ
>WENV181322839
OFKV01001087
[OFKV] marine metagenome; sea ice
449
360
-
Ser
GGA
[ENA]
¢þ
>WENV181322885
OFKV01006093
[OFKV] marine metagenome; sea ice
457
372
-
Tyr
GTA
[ENA]
¢þ
>WENV181322901
OFKV01011794
[OFKV] marine metagenome; sea ice
461
534
+
fMet
CAT
[ENA]
¢þ
>WENV181322928
OFKV01020072
[OFKV] marine metagenome; sea ice
464
392
-
Arg
TCT
[ENA]
¢þ
>WENV181322892
OFKV01007902
[OFKV] marine metagenome; sea ice
464
394
-
Gly
CCC
[ENA]
¢þ
>WENV181322949
OFKV01032511
[OFKV] marine metagenome; sea ice
469
393
-
Pro
GGG
[ENA]
¢þ
>WENV181322860
OFKV01002826
[OFKV] marine metagenome; sea ice
475
402
-
Gly
GCC
[ENA]
¢þ
>WENV181322940
OFKV01026724
[OFKV] marine metagenome; sea ice
477
403
-
Ala
TGC
[ENA]
¢þ
>WENV181322875
OFKV01005403
[OFKV] marine metagenome; sea ice
500
576
+
Pro
TGG
[ENA]
¢þ
>WENV181322887
OFKV01006758
[OFKV] marine metagenome; sea ice
511
585
+
Trp
CCA
[ENA]
¢þ
>WENV181322856
OFKV01002491
[OFKV] marine metagenome; sea ice
522
609
+
Ser
GCT
[ENA]
¢þ
>WENV181322844
OFKV01001531
[OFKV] marine metagenome; sea ice
523
450
-
Gln
TTG
[ENA]
¢þ
>WENV181322837
OFKV01000506
[OFKV] marine metagenome; sea ice
524
447
-
Ala
TGC
[ENA]
¢þ
>WENV181322908
OFKV01013918
[OFKV] marine metagenome; sea ice
536
610
+
Met
CAT
[ENA]
¢þ
>WENV181322921
OFKV01017366
[OFKV] marine metagenome; sea ice
545
469
-
Arg
TCT
[ENA]
¢þ
>WENV181322939
OFKV01025981
[OFKV] marine metagenome; sea ice
546
462
-
Leu
CAA
[ENA]
¢þ
>WENV181322927
OFKV01020072
[OFKV] marine metagenome; sea ice
547
474
-
Val
TAC
[ENA]
¢þ
>WENV181322854
OFKV01002332
[OFKV] marine metagenome; sea ice
553
629
+
Ile2
CAT
[ENA]
¢þ
>WENV181322865
OFKV01003581
[OFKV] marine metagenome; sea ice
557
630
+
Cys
GCA
[ENA]
¢þ
>WENV181322862
OFKV01003244
[OFKV] marine metagenome; sea ice
559
484
-
Phe
GAA
[ENA]
¢þ
>WENV181322870
OFKV01004663
[OFKV] marine metagenome; sea ice
569
641
+
Val
TAC
[ENA]
¢þ
>WENV181322883
OFKV01005912
[OFKV] marine metagenome; sea ice
571
490
-
Leu
TAA
[ENA]
¢þ
>WENV181322894
OFKV01008876
[OFKV] marine metagenome; sea ice
582
666
+
Leu
CAA
[ENA]
¢þ
>WENV181322897
OFKV01010824
[OFKV] marine metagenome; sea ice
588
502
-
Leu
TAA
[ENA]
¢þ
>WENV181322929
OFKV01020317
[OFKV] marine metagenome; sea ice
588
512
-
fMet
CAT
[ENA]
¢þ
>WENV181322905
OFKV01012829
[OFKV] marine metagenome; sea ice
611
698
+
Ser
GGA
[ENA]
¢þ
>WENV181322904
OFKV01012455
[OFKV] marine metagenome; sea ice
627
712
+
Leu
CAA
[ENA]
¢þ
>WENV181322880
OFKV01005547
[OFKV] marine metagenome; sea ice
642
728
+
Ile2
CAT
[ENA]
¢þ
>WENV181322920
OFKV01017366
[OFKV] marine metagenome; sea ice
646
570
-
Pro
TGG
[ENA]
¢þ
>WENV181322871
OFKV01004663
[OFKV] marine metagenome; sea ice
651
723
+
Arg
TCT
[ENA]
¢þ
>WENV181322882
OFKV01005912
[OFKV] marine metagenome; sea ice
652
580
-
Ala
TGC
[ENA]
¢þ
>WENV181322903
OFKV01012209
[OFKV] marine metagenome; sea ice
664
588
-
His
GTG
[ENA]
¢þ
>WENV181322916
OFKV01016510
[OFKV] marine metagenome; sea ice
667
594
-
Arg
TCT
[ENA]
¢þ
>WENV181322866
OFKV01003581
[OFKV] marine metagenome; sea ice
678
764
+
Leu
TAA
[ENA]
¢þ
>WENV181322857
OFKV01002491
[OFKV] marine metagenome; sea ice
681
756
+
Asp
GTC
[ENA]
¢þ
>WENV181322850
OFKV01001979
[OFKV] marine metagenome; sea ice
685
601
-
Leu
CAA
[ENA]
¢þ
>WENV181322896
OFKV01010707
[OFKV] marine metagenome; sea ice
694
623
-
Asn
GTT
[ENA]
¢þ
>WENV181322836
OFKV01000506
[OFKV] marine metagenome; sea ice
711
637
-
Ile
GAT
[ENA]
¢þ
>WENV181322853
OFKV01002165
[OFKV] marine metagenome; sea ice
732
802
+
Gly
TCC
[ENA]
¢þ
>WENV181322876
OFKV01005403
[OFKV] marine metagenome; sea ice
763
839
+
Arg
TCT
[ENA]
¢þ
>WENV181322893
OFKV01008604
[OFKV] marine metagenome; sea ice
772
698
-
Thr
TGT
[ENA]
¢þ
>WENV181322891
OFKV01007902
[OFKV] marine metagenome; sea ice
819
736
-
Leu
TAG
[ENA]
¢þ
>WENV181322878
OFKV01005467
[OFKV] marine metagenome; sea ice
839
912
+
Ile2
CAT
[ENA]
¢þ
>WENV181322855
OFKV01002432
[OFKV] marine metagenome; sea ice
856
932
+
Arg
CCG
[ENA]
¢þ
>WENV181322872
OFKV01004663
[OFKV] marine metagenome; sea ice
873
802
-
Thr
TGT
[ENA]
¢þ
>WENV181322877
OFKV01005403
[OFKV] marine metagenome; sea ice
980
1054
+
His
GTG
[ENA]
¢þ
>WENV181322834
OFKV01000362
[OFKV] marine metagenome; sea ice
1080
995
-
Leu
TAA
[ENA]
¢þ
>WENV181322868
OFKV01004385
[OFKV] marine metagenome; sea ice
1090
1017
-
Gly
CCC
[ENA]
¢þ
>WENV181322863
OFKV01003535
[OFKV] marine metagenome; sea ice
1095
1168
+
Gly
TCC
[ENA]
¢þ
>WENV181322869
OFKV01004470
[OFKV] marine metagenome; sea ice
1113
1022
-
Ser
TGA
[ENA]
¢þ
>WENV181322859
OFKV01002826
[OFKV] marine metagenome; sea ice
1137
1211
+
Lys
TTT
[ENA]
¢þ
>WENV181322848
OFKV01001850
[OFKV] marine metagenome; sea ice
1142
1066
-
fMet
CAT
[ENA]
¢þ
>WENV181322833
OFKV01000362
[OFKV] marine metagenome; sea ice
1239
1169
-
Cys
GCA
[ENA]
¢þ
>WENV181322838
OFKV01001081
[OFKV] marine metagenome; sea ice
1506
1578
+
Phe
GAA
[ENA]
¢þ
>WENV181322843
OFKV01001320
[OFKV] marine metagenome; sea ice
1555
1480
-
Thr
GGT
[ENA]
¢þ
>WENV181322845
OFKV01001542
[OFKV] marine metagenome; sea ice
1573
1489
-
Leu
GAG
[ENA]
¢þ
>WENV181322849
OFKV01001892
[OFKV] marine metagenome; sea ice
1582
1507
-
Lys
TTT
[ENA]
¢þ
>WENV181322842
OFKV01001320
[OFKV] marine metagenome; sea ice
1640
1567
-
Gly
TCC
[ENA]
¢þ
>WENV181322841
OFKV01001320
[OFKV] marine metagenome; sea ice
1757
1673
-
Tyr
GTA
[ENA]
¢þ
>WENV181322840
OFKV01001320
[OFKV] marine metagenome; sea ice
1840
1765
-
Thr
TGT
[ENA]
¢þ
>WENV181322831
OFKV01000320
[OFKV] marine metagenome; sea ice
1954
2027
+
fMet
CAT
[ENA]
¢þ
>WENV181322832
OFKV01000320
[OFKV] marine metagenome; sea ice
2573
2660
+
Ser
TGA
[ENA]
¢þ
>WENV181322827
OFKV01000061
[OFKV] marine metagenome; sea ice
2658
2733
+
Ala
TGC
[ENA]
¢þ
>WENV181322835
OFKV01000392
[OFKV] marine metagenome; sea ice
2700
2781
+
Leu
TAG
[ENA]
¢þ
>WENV181322828
OFKV01000061
[OFKV] marine metagenome; sea ice
2757
2833
+
Ile
GAT
[ENA]
¢þ
>WENV181322830
OFKV01000100
[OFKV] marine metagenome; sea ice
3923
3850
-
Ala
TGC
[ENA]
¢þ
>WENV181322829
OFKV01000100
[OFKV] marine metagenome; sea ice
3999
3926
-
Ile
GAT
[ENA]
¢þ
>WENV181322826
OFKV01000047
[OFKV] marine metagenome; sea ice
7662
7586
-
Ile
GAT
[ENA]
¢þ
>WENV181322825
OFKV01000047
[OFKV] marine metagenome; sea ice
7812
7737
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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