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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFLD] marine metagenome; sea ice
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181324256
OFLD01004176
[OFLD] marine metagenome; sea ice
6
81
+
Ala
GGC
[ENA]
¢þ
>WENV181324306
OFLD01014327
[OFLD] marine metagenome; sea ice
61
137
+
Ile
GAT
[ENA]
¢þ
>WENV181324237
OFLD01000351
[OFLD] marine metagenome; sea ice
62
136
+
Ala
TGC
[ENA]
¢þ
>WENV181324295
OFLD01011129
[OFLD] marine metagenome; sea ice
69
141
+
Arg
TCT
[ENA]
¢þ
>WENV181324335
OFLD01023660
[OFLD] marine metagenome; sea ice
75
159
+
Leu
TAG
[ENA]
¢þ
>WENV181324310
OFLD01014633
[OFLD] marine metagenome; sea ice
83
13
-
Cys
GCA
[ENA]
¢þ
>WENV181324229
OFLD01000027
[OFLD] marine metagenome; sea ice
99
174
+
Pro
TGG
[ENA]
¢þ
>WENV181324265
OFLD01004858
[OFLD] marine metagenome; sea ice
102
185
+
Leu
CAG
[ENA]
¢þ
>WENV181324319
OFLD01017469
[OFLD] marine metagenome; sea ice
104
180
+
Asp
GTC
[ENA]
¢þ
>WENV181324299
OFLD01012093
[OFLD] marine metagenome; sea ice
136
63
-
Gly
TCC
[ENA]
¢þ
>WENV181324331
OFLD01021438
[OFLD] marine metagenome; sea ice
143
69
-
Ile2
CAT
[ENA]
¢þ
>WENV181324275
OFLD01006262
[OFLD] marine metagenome; sea ice
160
236
+
Trp
CCA
[ENA]
¢þ
>WENV181324336
OFLD01023660
[OFLD] marine metagenome; sea ice
164
238
+
Gln
TTG
[ENA]
¢þ
>WENV181324309
OFLD01014633
[OFLD] marine metagenome; sea ice
165
90
-
Gly
GCC
[ENA]
¢þ
>WENV181324276
OFLD01006383
[OFLD] marine metagenome; sea ice
165
90
-
Asn
GTT
[ENA]
¢þ
>WENV181324322
OFLD01018121
[OFLD] marine metagenome; sea ice
166
242
+
Pro
TGG
[ENA]
¢þ
>WENV181324288
OFLD01009477
[OFLD] marine metagenome; sea ice
169
93
-
Pro
TGG
[ENA]
¢þ
>WENV181324308
OFLD01014462
[OFLD] marine metagenome; sea ice
176
92
-
Leu
TAG
[ENA]
¢þ
>WENV181324314
OFLD01015752
[OFLD] marine metagenome; sea ice
184
257
+
Ala
TGC
[ENA]
¢þ
>WENV181324301
OFLD01012318
[OFLD] marine metagenome; sea ice
192
108
-
Leu
TAG
[ENA]
¢þ
>WENV181324284
OFLD01008136
[OFLD] marine metagenome; sea ice
195
121
-
Arg
TCT
[ENA]
¢þ
>WENV181324248
OFLD01002714
[OFLD] marine metagenome; sea ice
196
110
-
Leu
TAA
[ENA]
¢þ
>WENV181324328
OFLD01019284
[OFLD] marine metagenome; sea ice
199
123
-
Pro
GGG
[ENA]
¢þ
>WENV181324339
OFLD01025268
[OFLD] marine metagenome; sea ice
199
125
-
Thr
GGT
[ENA]
¢þ
>WENV181324273
OFLD01005670
[OFLD] marine metagenome; sea ice
204
129
-
Thr
CGT
[ENA]
¢þ
>WENV181324311
OFLD01014942
[OFLD] marine metagenome; sea ice
205
118
-
Ser
TGA
[ENA]
¢þ
>WENV181324294
OFLD01010819
[OFLD] marine metagenome; sea ice
205
291
+
Leu
CAA
[ENA]
¢þ
>WENV181324325
OFLD01018663
[OFLD] marine metagenome; sea ice
213
287
+
Asp
GTC
[ENA]
¢þ
>WENV181324258
OFLD01004227
[OFLD] marine metagenome; sea ice
214
142
-
Met
CAT
[ENA]
¢þ
>WENV181324298
OFLD01011932
[OFLD] marine metagenome; sea ice
216
292
+
Pro
GGG
[ENA]
¢þ
>WENV181324332
OFLD01021685
[OFLD] marine metagenome; sea ice
218
293
+
Val
TAC
[ENA]
¢þ
>WENV181324307
OFLD01014327
[OFLD] marine metagenome; sea ice
240
315
+
Ala
TGC
[ENA]
¢þ
>WENV181324318
OFLD01017111
[OFLD] marine metagenome; sea ice
245
171
-
Gly
GCC
[ENA]
¢þ
>WENV181324238
OFLD01000619
[OFLD] marine metagenome; sea ice
247
158
-
Ser
GGA
[ENA]
¢þ
>WENV181324300
OFLD01012318
[OFLD] marine metagenome; sea ice
271
196
-
His
GTG
[ENA]
¢þ
>WENV181324330
OFLD01021068
[OFLD] marine metagenome; sea ice
273
202
-
Thr
TGT
[ENA]
¢þ
>WENV181324282
OFLD01007899
[OFLD] marine metagenome; sea ice
274
198
-
Met
CAT
[ENA]
¢þ
>WENV181324283
OFLD01008136
[OFLD] marine metagenome; sea ice
287
212
-
Pro
TGG
[ENA]
¢þ
>WENV181324313
OFLD01015137
[OFLD] marine metagenome; sea ice
295
220
-
Val
TAC
[ENA]
¢þ
>WENV181324296
OFLD01011129
[OFLD] marine metagenome; sea ice
305
380
+
Arg
TCG
[ENA]
¢þ
>WENV181324280
OFLD01007348
[OFLD] marine metagenome; sea ice
307
236
-
Arg
CCG
[ENA]
¢þ
>WENV181324266
OFLD01004858
[OFLD] marine metagenome; sea ice
315
387
+
Arg
TCT
[ENA]
¢þ
>WENV181324247
OFLD01002714
[OFLD] marine metagenome; sea ice
317
244
-
Cys
GCA
[ENA]
¢þ
>WENV181324341
OFLD01026193
[OFLD] marine metagenome; sea ice
320
245
-
Ala
GGC
[ENA]
¢þ
>WENV181324338
OFLD01025268
[OFLD] marine metagenome; sea ice
328
255
-
Gly
TCC
[ENA]
¢þ
>WENV181324270
OFLD01005428
[OFLD] marine metagenome; sea ice
331
404
+
Cys
GCA
[ENA]
¢þ
>WENV181324250
OFLD01003325
[OFLD] marine metagenome; sea ice
334
410
+
His
GTG
[ENA]
¢þ
>WENV181324302
OFLD01012388
[OFLD] marine metagenome; sea ice
339
256
-
Ser
AGA
[ENA]
¢þ
>WENV181324279
OFLD01007240
[OFLD] marine metagenome; sea ice
339
268
-
Pro
CGG
[ENA]
¢þ
>WENV181324337
OFLD01023660
[OFLD] marine metagenome; sea ice
339
413
+
Gln
TTG
[ENA]
¢þ
>WENV181324274
OFLD01005936
[OFLD] marine metagenome; sea ice
341
414
+
Ile
GAT
[ENA]
¢þ
>WENV181324342
OFLD01026732
[OFLD] marine metagenome; sea ice
343
429
+
Leu
TAA
[ENA]
¢þ
>WENV181324293
OFLD01010098
[OFLD] marine metagenome; sea ice
351
275
-
Arg
ACG
[ENA]
¢þ
>WENV181324281
OFLD01007640
[OFLD] marine metagenome; sea ice
356
440
+
Leu
GAG
[ENA]
¢þ
>WENV181324321
OFLD01018066
[OFLD] marine metagenome; sea ice
361
443
+
Leu
CAA
[ENA]
¢þ
>WENV181324333
OFLD01021685
[OFLD] marine metagenome; sea ice
362
438
+
Asp
GTC
[ENA]
¢þ
>WENV181324286
OFLD01008677
[OFLD] marine metagenome; sea ice
368
449
+
Leu
CAA
[ENA]
¢þ
>WENV181324327
OFLD01019086
[OFLD] marine metagenome; sea ice
371
297
-
Phe
GAA
[ENA]
¢þ
>WENV181324262
OFLD01004589
[OFLD] marine metagenome; sea ice
376
301
-
Ala
GGC
[ENA]
¢þ
>WENV181324315
OFLD01016018
[OFLD] marine metagenome; sea ice
376
303
-
Trp
CCA
[ENA]
¢þ
>WENV181324285
OFLD01008387
[OFLD] marine metagenome; sea ice
386
460
+
Thr
GGT
[ENA]
¢þ
>WENV181324334
OFLD01023253
[OFLD] marine metagenome; sea ice
389
471
+
Leu
CAA
[ENA]
¢þ
>WENV181324287
OFLD01009062
[OFLD] marine metagenome; sea ice
392
468
+
Thr
CGT
[ENA]
¢þ
>WENV181324316
OFLD01016145
[OFLD] marine metagenome; sea ice
397
472
+
Lys
TTT
[ENA]
¢þ
>WENV181324312
OFLD01015137
[OFLD] marine metagenome; sea ice
398
323
-
Val
TAC
[ENA]
¢þ
>WENV181324253
OFLD01003766
[OFLD] marine metagenome; sea ice
399
317
-
Leu
CAA
[ENA]
¢þ
>WENV181324267
OFLD01004858
[OFLD] marine metagenome; sea ice
407
481
+
Val
TAC
[ENA]
¢þ
>WENV181324254
OFLD01003963
[OFLD] marine metagenome; sea ice
409
485
+
Pro
GGG
[ENA]
¢þ
>WENV181324326
OFLD01018668
[OFLD] marine metagenome; sea ice
416
340
-
Ile2
CAT
[ENA]
¢þ
>WENV181324340
OFLD01025839
[OFLD] marine metagenome; sea ice
423
351
-
Thr
GGT
[ENA]
¢þ
>WENV181324320
OFLD01017832
[OFLD] marine metagenome; sea ice
424
343
-
Ser
GCT
[ENA]
¢þ
>WENV181324278
OFLD01007240
[OFLD] marine metagenome; sea ice
437
509
+
Arg
ACG
[ENA]
¢þ
>WENV181324277
OFLD01006428
[OFLD] marine metagenome; sea ice
441
357
-
Leu
GAG
[ENA]
¢þ
>WENV181324246
OFLD01002714
[OFLD] marine metagenome; sea ice
443
368
-
Gly
GCC
[ENA]
¢þ
>WENV181324329
OFLD01019601
[OFLD] marine metagenome; sea ice
446
360
-
Ile2
CAT
[ENA]
¢þ
>WENV181324239
OFLD01000667
[OFLD] marine metagenome; sea ice
446
370
-
Trp
CCA
[ENA]
¢þ
>WENV181324323
OFLD01018290
[OFLD] marine metagenome; sea ice
461
369
-
Ser
GCT
[ENA]
¢þ
>WENV181324272
OFLD01005516
[OFLD] marine metagenome; sea ice
462
388
-
Glu
TTC
[ENA]
¢þ
>WENV181324317
OFLD01016886
[OFLD] marine metagenome; sea ice
462
537
+
Phe
GAA
[ENA]
¢þ
>WENV181324257
OFLD01004227
[OFLD] marine metagenome; sea ice
481
409
-
Val
CAC
[ENA]
¢þ
>WENV181324292
OFLD01010098
[OFLD] marine metagenome; sea ice
488
412
-
Arg
ACG
[ENA]
¢þ
>WENV181324271
OFLD01005428
[OFLD] marine metagenome; sea ice
495
581
+
Leu
TAA
[ENA]
¢þ
>WENV181324303
OFLD01012464
[OFLD] marine metagenome; sea ice
499
423
-
Ile
GAT
[ENA]
¢þ
>WENV181324304
OFLD01012515
[OFLD] marine metagenome; sea ice
518
442
-
Pro
CGG
[ENA]
¢þ
>WENV181324305
OFLD01013170
[OFLD] marine metagenome; sea ice
522
433
-
Ser
CGA
[ENA]
¢þ
>WENV181324324
OFLD01018641
[OFLD] marine metagenome; sea ice
526
450
-
Cys
GCA
[ENA]
¢þ
>WENV181324290
OFLD01009911
[OFLD] marine metagenome; sea ice
527
452
-
Thr
GGT
[ENA]
¢þ
>WENV181324255
OFLD01004109
[OFLD] marine metagenome; sea ice
543
457
-
Leu
CAG
[ENA]
¢þ
>WENV181324241
OFLD01001255
[OFLD] marine metagenome; sea ice
545
618
+
Gly
GCC
[ENA]
¢þ
>WENV181324252
OFLD01003766
[OFLD] marine metagenome; sea ice
578
505
-
Met
CAT
[ENA]
¢þ
>WENV181324291
OFLD01010098
[OFLD] marine metagenome; sea ice
603
516
-
Ser
GCT
[ENA]
¢þ
>WENV181324289
OFLD01009911
[OFLD] marine metagenome; sea ice
612
539
-
Gly
TCC
[ENA]
¢þ
>WENV181324297
OFLD01011129
[OFLD] marine metagenome; sea ice
619
538
-
Leu
CAG
[ENA]
¢þ
>WENV181324263
OFLD01004780
[OFLD] marine metagenome; sea ice
620
549
-
Asp
GTC
[ENA]
¢þ
>WENV181324251
OFLD01003766
[OFLD] marine metagenome; sea ice
673
757
+
Ser
AGA
[ENA]
¢þ
>WENV181324259
OFLD01004374
[OFLD] marine metagenome; sea ice
685
602
-
Tyr
GTA
[ENA]
¢þ
>WENV181324242
OFLD01001561
[OFLD] marine metagenome; sea ice
687
762
+
Trp
CCA
[ENA]
¢þ
>WENV181324264
OFLD01004843
[OFLD] marine metagenome; sea ice
700
774
+
Gln
TTG
[ENA]
¢þ
>WENV181324268
OFLD01004858
[OFLD] marine metagenome; sea ice
705
778
+
Glu
TTC
[ENA]
¢þ
>WENV181324260
OFLD01004442
[OFLD] marine metagenome; sea ice
717
643
-
Gln
TTG
[ENA]
¢þ
>WENV181324269
OFLD01004858
[OFLD] marine metagenome; sea ice
785
868
+
Ser
AGA
[ENA]
¢þ
>WENV181324261
OFLD01004493
[OFLD] marine metagenome; sea ice
798
724
-
Lys
TTT
[ENA]
¢þ
>WENV181324240
OFLD01000939
[OFLD] marine metagenome; sea ice
813
743
-
Gly
TCC
[ENA]
¢þ
>WENV181324249
OFLD01002720
[OFLD] marine metagenome; sea ice
816
890
+
Arg
CCT
[ENA]
¢þ
>WENV181324245
OFLD01002112
[OFLD] marine metagenome; sea ice
820
744
-
Arg
ACG
[ENA]
¢þ
>WENV181324244
OFLD01002047
[OFLD] marine metagenome; sea ice
938
866
-
Arg
TCT
[ENA]
¢þ
>WENV181324243
OFLD01002047
[OFLD] marine metagenome; sea ice
1021
948
-
Val
TAC
[ENA]
¢þ
>WENV181324233
OFLD01000237
[OFLD] marine metagenome; sea ice
1158
1231
+
fMet
CAT
[ENA]
¢þ
>WENV181324236
OFLD01000313
[OFLD] marine metagenome; sea ice
1692
1763
+
Gln
TTG
[ENA]
¢þ
>WENV181324234
OFLD01000237
[OFLD] marine metagenome; sea ice
1736
1823
+
Ser
TGA
[ENA]
¢þ
>WENV181324232
OFLD01000226
[OFLD] marine metagenome; sea ice
1965
2040
+
Asn
GTT
[ENA]
¢þ
>WENV181324235
OFLD01000239
[OFLD] marine metagenome; sea ice
2237
2161
-
Val
GAC
[ENA]
¢þ
>WENV181324230
OFLD01000027
[OFLD] marine metagenome; sea ice
3170
3243
+
Ile
GAT
[ENA]
¢þ
>WENV181324231
OFLD01000027
[OFLD] marine metagenome; sea ice
3246
3319
+
Ala
TGC
[ENA]
¢þ
>WENV181324227
OFLD01000019
[OFLD] marine metagenome; sea ice
3334
3409
+
Ala
TGC
[ENA]
¢þ
>WENV181324228
OFLD01000019
[OFLD] marine metagenome; sea ice
3433
3509
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK