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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFLF] marine metagenome; melt pond
HIT:
128 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181324574
OFLF01003665
[OFLF] marine metagenome; melt pond
6
80
+
Ile2
CAT
[ENA]
¢þ
>WENV181324577
OFLF01004549
[OFLF] marine metagenome; melt pond
14
89
+
Gly
GCC
[ENA]
¢þ
>WENV181324597
OFLF01010660
[OFLF] marine metagenome; melt pond
23
99
+
Ile2
CAT
[ENA]
¢þ
>WENV181324570
OFLF01003294
[OFLF] marine metagenome; melt pond
74
157
+
Ser
GCT
[ENA]
¢þ
>WENV181324569
OFLF01003122
[OFLF] marine metagenome; melt pond
85
11
-
Arg
TCT
[ENA]
¢þ
>WENV181324611
OFLF01018497
[OFLF] marine metagenome; melt pond
85
165
+
Leu
TAG
[ENA]
¢þ
>WENV181324588
OFLF01005734
[OFLF] marine metagenome; melt pond
115
43
-
Gly
TCC
[ENA]
¢þ
>WENV181324617
OFLF01021564
[OFLF] marine metagenome; melt pond
122
46
-
fMet
CAT
[ENA]
¢þ
>WENV181324552
OFLF01001679
[OFLF] marine metagenome; melt pond
164
240
+
Ile
TAT
[ENA]
¢þ
>WENV181324602
OFLF01012149
[OFLF] marine metagenome; melt pond
177
104
-
Ala
TGC
[ENA]
¢þ
>WENV181324568
OFLF01003122
[OFLF] marine metagenome; melt pond
182
107
-
Pro
TGG
[ENA]
¢þ
>WENV181324515
OFLF01000287
[OFLF] marine metagenome; melt pond
183
257
+
Ile2
CAT
[ENA]
¢þ
>WENV181324608
OFLF01016488
[OFLF] marine metagenome; melt pond
205
279
+
Asn
GTT
[ENA]
¢þ
>WENV181324606
OFLF01014258
[OFLF] marine metagenome; melt pond
206
130
-
Asp
GTC
[ENA]
¢þ
>WENV181324610
OFLF01018383
[OFLF] marine metagenome; melt pond
219
308
+
Ser
GGA
[ENA]
¢þ
>WENV181324614
OFLF01018900
[OFLF] marine metagenome; melt pond
252
177
-
Phe
GAA
[ENA]
¢þ
>WENV181324616
OFLF01020347
[OFLF] marine metagenome; melt pond
265
192
-
Ala
TGC
[ENA]
¢þ
>WENV181324512
OFLF01000224
[OFLF] marine metagenome; melt pond
284
359
+
fMet
CAT
[ENA]
¢þ
>WENV181324607
OFLF01014427
[OFLF] marine metagenome; melt pond
293
220
-
Trp
CCA
[ENA]
¢þ
>WENV181324590
OFLF01006663
[OFLF] marine metagenome; melt pond
310
237
-
Gly
CCC
[ENA]
¢þ
>WENV181324601
OFLF01012149
[OFLF] marine metagenome; melt pond
310
239
-
Gly
GCC
[ENA]
¢þ
>WENV181324563
OFLF01002707
[OFLF] marine metagenome; melt pond
314
239
-
Val
TAC
[ENA]
¢þ
>WENV181324596
OFLF01010605
[OFLF] marine metagenome; melt pond
323
252
-
Gln
CTG
[ENA]
¢þ
>WENV181324600
OFLF01012059
[OFLF] marine metagenome; melt pond
323
397
+
Met
CAT
[ENA]
¢þ
>WENV181324578
OFLF01004549
[OFLF] marine metagenome; melt pond
325
411
+
Leu
TAA
[ENA]
¢þ
>WENV181324586
OFLF01004910
[OFLF] marine metagenome; melt pond
330
258
-
Gln
TTG
[ENA]
¢þ
>WENV181324567
OFLF01003122
[OFLF] marine metagenome; melt pond
333
249
-
Ser
GCT
[ENA]
¢þ
>WENV181324526
OFLF01000539
[OFLF] marine metagenome; melt pond
335
411
+
Pro
TGG
[ENA]
¢þ
>WENV181324603
OFLF01012304
[OFLF] marine metagenome; melt pond
340
419
+
Leu
CAG
[ENA]
¢þ
>WENV181324618
OFLF01022061
[OFLF] marine metagenome; melt pond
342
268
-
Val
GAC
[ENA]
¢þ
>WENV181324612
OFLF01018497
[OFLF] marine metagenome; melt pond
357
428
+
Cys
GCA
[ENA]
¢þ
>WENV181324598
OFLF01011758
[OFLF] marine metagenome; melt pond
366
293
-
Arg
ACG
[ENA]
¢þ
>WENV181324553
OFLF01001679
[OFLF] marine metagenome; melt pond
366
437
+
Gly
GCC
[ENA]
¢þ
>WENV181324615
OFLF01020347
[OFLF] marine metagenome; melt pond
382
305
-
Ile
GAT
[ENA]
¢þ
>WENV181324536
OFLF01000643
[OFLF] marine metagenome; melt pond
390
316
-
Glu
CTC
[ENA]
¢þ
>WENV181324513
OFLF01000224
[OFLF] marine metagenome; melt pond
391
464
+
fMet
CAT
[ENA]
¢þ
>WENV181324599
OFLF01011898
[OFLF] marine metagenome; melt pond
416
490
+
Met
CAT
[ENA]
¢þ
>WENV181324543
OFLF01001193
[OFLF] marine metagenome; melt pond
426
355
-
Ala
CGC
[ENA]
¢þ
>WENV181324576
OFLF01004181
[OFLF] marine metagenome; melt pond
428
353
-
Leu
TAA
[ENA]
¢þ
>WENV181324613
OFLF01018497
[OFLF] marine metagenome; melt pond
449
520
+
Pro
CGG
[ENA]
¢þ
>WENV181324530
OFLF01000556
[OFLF] marine metagenome; melt pond
469
544
+
Asn
GTT
[ENA]
¢þ
>WENV181324527
OFLF01000539
[OFLF] marine metagenome; melt pond
476
552
+
Arg
TCT
[ENA]
¢þ
>WENV181324591
OFLF01006742
[OFLF] marine metagenome; melt pond
480
555
+
Lys
TTT
[ENA]
¢þ
>WENV181324595
OFLF01009121
[OFLF] marine metagenome; melt pond
485
560
+
Lys
TTT
[ENA]
¢þ
>WENV181324581
OFLF01004891
[OFLF] marine metagenome; melt pond
487
568
+
Leu
CAA
[ENA]
¢þ
>WENV181324593
OFLF01006924
[OFLF] marine metagenome; melt pond
491
562
+
Gln
TTG
[ENA]
¢þ
>WENV181324609
OFLF01017873
[OFLF] marine metagenome; melt pond
492
405
-
Ser
CGA
[ENA]
¢þ
>WENV181324585
OFLF01004910
[OFLF] marine metagenome; melt pond
492
410
-
Ser
CGA
[ENA]
¢þ
>WENV181324605
OFLF01014059
[OFLF] marine metagenome; melt pond
493
420
-
Gly
CCC
[ENA]
¢þ
>WENV181324559
OFLF01002123
[OFLF] marine metagenome; melt pond
498
572
+
Asn
GTT
[ENA]
¢þ
>WENV181324560
OFLF01002194
[OFLF] marine metagenome; melt pond
498
590
+
Ser
GCT
[ENA]
¢þ
>WENV181324556
OFLF01002059
[OFLF] marine metagenome; melt pond
500
574
+
Ile
AAT
[ENA]
¢þ
>WENV181324592
OFLF01006777
[OFLF] marine metagenome; melt pond
510
585
+
Ala
AGC
[ENA]
¢þ
>WENV181324562
OFLF01002614
[OFLF] marine metagenome; melt pond
521
447
-
Val
CAC
[ENA]
¢þ
>WENV181324587
OFLF01005318
[OFLF] marine metagenome; melt pond
533
459
-
Val
CAC
[ENA]
¢þ
>WENV181324508
OFLF01000176
[OFLF] marine metagenome; melt pond
534
608
+
Lys
TTT
[ENA]
¢þ
>WENV181324546
OFLF01001311
[OFLF] marine metagenome; melt pond
539
464
-
His
GTG
[ENA]
¢þ
>WENV181324594
OFLF01007590
[OFLF] marine metagenome; melt pond
542
471
-
Ala
AGC
[ENA]
¢þ
>WENV181324604
OFLF01013852
[OFLF] marine metagenome; melt pond
549
476
-
Ile
AAT
[ENA]
¢þ
>WENV181324589
OFLF01006044
[OFLF] marine metagenome; melt pond
567
638
+
Asp
GTC
[ENA]
¢þ
>WENV181324584
OFLF01004910
[OFLF] marine metagenome; melt pond
601
528
-
Met
CAT
[ENA]
¢þ
>WENV181324535
OFLF01000643
[OFLF] marine metagenome; melt pond
624
553
-
His
GTG
[ENA]
¢þ
>WENV181324547
OFLF01001386
[OFLF] marine metagenome; melt pond
641
714
+
Thr
CGT
[ENA]
¢þ
>WENV181324561
OFLF01002460
[OFLF] marine metagenome; melt pond
648
574
-
Gln
CTG
[ENA]
¢þ
>WENV181324557
OFLF01002059
[OFLF] marine metagenome; melt pond
662
736
+
Lys
CTT
[ENA]
¢þ
>WENV181324580
OFLF01004844
[OFLF] marine metagenome; melt pond
668
595
-
Ala
TGC
[ENA]
¢þ
>WENV181324516
OFLF01000289
[OFLF] marine metagenome; melt pond
676
748
+
Arg
CCG
[ENA]
¢þ
>WENV181324571
OFLF01003294
[OFLF] marine metagenome; melt pond
682
765
+
Ser
CGA
[ENA]
¢þ
>WENV181324566
OFLF01003093
[OFLF] marine metagenome; melt pond
697
786
+
Ser
TGA
[ENA]
¢þ
>WENV181324554
OFLF01001679
[OFLF] marine metagenome; melt pond
700
783
+
Ser
GCT
[ENA]
¢þ
>WENV181324565
OFLF01002939
[OFLF] marine metagenome; melt pond
714
640
-
Pro
TGG
[ENA]
¢þ
>WENV181324575
OFLF01003785
[OFLF] marine metagenome; melt pond
724
816
+
Leu
TAA
[ENA]
¢þ
>WENV181324522
OFLF01000421
[OFLF] marine metagenome; melt pond
725
652
-
Thr
TGT
[ENA]
¢þ
>WENV181324583
OFLF01004910
[OFLF] marine metagenome; melt pond
727
656
-
Thr
TGT
[ENA]
¢þ
>WENV181324548
OFLF01001396
[OFLF] marine metagenome; melt pond
741
824
+
Leu
GAG
[ENA]
¢þ
>WENV181324558
OFLF01002059
[OFLF] marine metagenome; melt pond
743
815
+
Asn
GTT
[ENA]
¢þ
>WENV181324579
OFLF01004844
[OFLF] marine metagenome; melt pond
744
669
-
Ile
GAT
[ENA]
¢þ
>WENV181324572
OFLF01003494
[OFLF] marine metagenome; melt pond
744
818
+
Thr
TGT
[ENA]
¢þ
>WENV181324564
OFLF01002939
[OFLF] marine metagenome; melt pond
787
860
+
Gly
TCC
[ENA]
¢þ
>WENV181324537
OFLF01000657
[OFLF] marine metagenome; melt pond
830
912
+
Leu
CAA
[ENA]
¢þ
>WENV181324582
OFLF01004910
[OFLF] marine metagenome; melt pond
846
775
-
Gly
TCC
[ENA]
¢þ
>WENV181324573
OFLF01003588
[OFLF] marine metagenome; melt pond
905
980
+
Arg
CCG
[ENA]
¢þ
>WENV181324531
OFLF01000643
[OFLF] marine metagenome; melt pond
946
1019
+
Thr
TGT
[ENA]
¢þ
>WENV181324514
OFLF01000286
[OFLF] marine metagenome; melt pond
1082
993
-
Ser
CGA
[ENA]
¢þ
>WENV181324549
OFLF01001576
[OFLF] marine metagenome; melt pond
1224
1297
+
Lys
TTT
[ENA]
¢þ
>WENV181324532
OFLF01000643
[OFLF] marine metagenome; melt pond
1334
1407
+
Cys
GCA
[ENA]
¢þ
>WENV181324550
OFLF01001576
[OFLF] marine metagenome; melt pond
1335
1408
+
Lys
TTT
[ENA]
¢þ
>WENV181324555
OFLF01001679
[OFLF] marine metagenome; melt pond
1388
1466
+
Leu
AAG
[ENA]
¢þ
>WENV181324551
OFLF01001576
[OFLF] marine metagenome; melt pond
1450
1533
+
Leu
GAG
[ENA]
¢þ
>WENV181324544
OFLF01001237
[OFLF] marine metagenome; melt pond
1451
1523
+
Gln
TTG
[ENA]
¢þ
>WENV181324525
OFLF01000523
[OFLF] marine metagenome; melt pond
1536
1465
-
Trp
CCA
[ENA]
¢þ
>WENV181324545
OFLF01001272
[OFLF] marine metagenome; melt pond
1598
1674
+
Pro
GGG
[ENA]
¢þ
>WENV181324541
OFLF01000772
[OFLF] marine metagenome; melt pond
1631
1703
+
Arg
CCT
[ENA]
¢þ
>WENV181324542
OFLF01000822
[OFLF] marine metagenome; melt pond
1640
1566
-
Ala
GGC
[ENA]
¢þ
>WENV181324524
OFLF01000424
[OFLF] marine metagenome; melt pond
1669
1585
-
Leu
GAG
[ENA]
¢þ
>WENV181324509
OFLF01000176
[OFLF] marine metagenome; melt pond
1819
1895
+
Lys
TTT
[ENA]
¢þ
>WENV181324540
OFLF01000690
[OFLF] marine metagenome; melt pond
1948
2033
+
Ser
TGA
[ENA]
¢þ
>WENV181324518
OFLF01000364
[OFLF] marine metagenome; melt pond
1996
2068
+
Thr
GGT
[ENA]
¢þ
>WENV181324519
OFLF01000364
[OFLF] marine metagenome; melt pond
2087
2163
+
Met
CAT
[ENA]
¢þ
>WENV181324534
OFLF01000643
[OFLF] marine metagenome; melt pond
2144
2072
-
Arg
TCG
[ENA]
¢þ
>WENV181324539
OFLF01000678
[OFLF] marine metagenome; melt pond
2145
2072
-
Gly
TCC
[ENA]
¢þ
>WENV181324528
OFLF01000547
[OFLF] marine metagenome; melt pond
2193
2268
+
Glu
TTC
[ENA]
¢þ
>WENV181324529
OFLF01000547
[OFLF] marine metagenome; melt pond
2292
2366
+
Asp
GTC
[ENA]
¢þ
>WENV181324533
OFLF01000643
[OFLF] marine metagenome; melt pond
2304
2386
+
Leu
TAA
[ENA]
¢þ
>WENV181324538
OFLF01000678
[OFLF] marine metagenome; melt pond
2332
2247
-
Tyr
GTA
[ENA]
¢þ
>WENV181324520
OFLF01000420
[OFLF] marine metagenome; melt pond
2566
2642
+
Ile
GAT
[ENA]
¢þ
>WENV181324521
OFLF01000420
[OFLF] marine metagenome; melt pond
2671
2746
+
Ala
TGC
[ENA]
¢þ
>WENV181324523
OFLF01000422
[OFLF] marine metagenome; melt pond
2749
2823
+
Pro
GGG
[ENA]
¢þ
>WENV181324505
OFLF01000120
[OFLF] marine metagenome; melt pond
2846
2771
-
Val
GAC
[ENA]
¢þ
>WENV181324504
OFLF01000120
[OFLF] marine metagenome; melt pond
2930
2857
-
Cys
GCA
[ENA]
¢þ
>WENV181324507
OFLF01000161
[OFLF] marine metagenome; melt pond
3000
2926
-
fMet
CAT
[ENA]
¢þ
>WENV181324503
OFLF01000120
[OFLF] marine metagenome; melt pond
3027
2955
-
Gly
GCC
[ENA]
¢þ
>WENV181324517
OFLF01000350
[OFLF] marine metagenome; melt pond
3069
2993
-
Met
CAT
[ENA]
¢þ
>WENV181324510
OFLF01000199
[OFLF] marine metagenome; melt pond
3271
3346
+
Arg
TCT
[ENA]
¢þ
>WENV181324511
OFLF01000207
[OFLF] marine metagenome; melt pond
3500
3574
+
Ile
TAT
[ENA]
¢þ
>WENV181324506
OFLF01000126
[OFLF] marine metagenome; melt pond
4097
4024
-
Glu
CTC
[ENA]
¢þ
>WENV181324499
OFLF01000060
[OFLF] marine metagenome; melt pond
5004
4930
-
Ala
TGC
[ENA]
¢þ
>WENV181324500
OFLF01000077
[OFLF] marine metagenome; melt pond
5058
5131
+
Arg
CCT
[ENA]
¢þ
>WENV181324498
OFLF01000060
[OFLF] marine metagenome; melt pond
5182
5108
-
Ile
GAT
[ENA]
¢þ
>WENV181324502
OFLF01000110
[OFLF] marine metagenome; melt pond
5245
5170
-
His
GTG
[ENA]
¢þ
>WENV181324501
OFLF01000100
[OFLF] marine metagenome; melt pond
5521
5446
-
Asn
ATT
[ENA]
¢þ
>WENV181324497
OFLF01000041
[OFLF] marine metagenome; melt pond
8365
8439
+
Ala
GGC
[ENA]
¢þ
>WENV181324493
OFLF01000013
[OFLF] marine metagenome; melt pond
8682
8769
+
Ser
TGA
[ENA]
¢þ
>WENV181324496
OFLF01000033
[OFLF] marine metagenome; melt pond
9089
9007
-
Leu
TAG
[ENA]
¢þ
>WENV181324495
OFLF01000024
[OFLF] marine metagenome; melt pond
9215
9302
+
Ser
GGA
[ENA]
¢þ
>WENV181324491
OFLF01000012
[OFLF] marine metagenome; melt pond
9476
9550
+
Ile
GAT
[ENA]
¢þ
>WENV181324492
OFLF01000012
[OFLF] marine metagenome; melt pond
9584
9657
+
Ala
TGC
[ENA]
¢þ
>WENV181324494
OFLF01000013
[OFLF] marine metagenome; melt pond
10238
10329
+
Ser
GCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK