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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFLN] metagenome; faeces
HIT:
162 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181326834
OFLN01000288
[OFLN] metagenome; faeces
2
76
+
Gln
CTG
[ENA]
¢þ
>WENV181326866
OFLN01001293
[OFLN] metagenome; faeces
2
77
+
Ala
TGC
[ENA]
¢þ
>WENV181326850
OFLN01000728
[OFLN] metagenome; faeces
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV181326769
OFLN01000060
[OFLN] metagenome; faeces
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV181326818
OFLN01000187
[OFLN] metagenome; faeces
76
1
-
Val
GAC
[ENA]
¢þ
>WENV181326827
OFLN01000248
[OFLN] metagenome; faeces
77
2
-
Val
TAC
[ENA]
¢þ
>WENV181326847
OFLN01000566
[OFLN] metagenome; faeces
77
2
-
Ala
GGC
[ENA]
¢þ
>WENV181326782
OFLN01000084
[OFLN] metagenome; faeces
77
4
-
Gly
TCC
[ENA]
¢þ
>WENV181326867
OFLN01001293
[OFLN] metagenome; faeces
102
176
+
Met
CAT
[ENA]
¢þ
>WENV181326835
OFLN01000288
[OFLN] metagenome; faeces
111
185
+
Gln
CTG
[ENA]
¢þ
>WENV181326729
OFLN01000015
[OFLN] metagenome; faeces
124
199
+
Lys
TTT
[ENA]
¢þ
>WENV181326864
OFLN01001235
[OFLN] metagenome; faeces
138
214
+
Ile
GAT
[ENA]
¢þ
>WENV181326768
OFLN01000060
[OFLN] metagenome; faeces
154
79
-
Val
TAC
[ENA]
¢þ
>WENV181326859
OFLN01001088
[OFLN] metagenome; faeces
158
85
-
Cys
GCA
[ENA]
¢þ
>WENV181326860
OFLN01001166
[OFLN] metagenome; faeces
158
234
+
Arg
TCT
[ENA]
¢þ
>WENV181326781
OFLN01000084
[OFLN] metagenome; faeces
186
100
-
Leu
GAG
[ENA]
¢þ
>WENV181326826
OFLN01000248
[OFLN] metagenome; faeces
188
113
-
Lys
TTT
[ENA]
¢þ
>WENV181326868
OFLN01001293
[OFLN] metagenome; faeces
203
276
+
Ile2
CAT
[ENA]
¢þ
>WENV181326730
OFLN01000015
[OFLN] metagenome; faeces
233
308
+
Lys
TTT
[ENA]
¢þ
>WENV181326858
OFLN01001088
[OFLN] metagenome; faeces
235
164
-
Gln
TTG
[ENA]
¢þ
>WENV181326767
OFLN01000060
[OFLN] metagenome; faeces
271
196
-
Val
TAC
[ENA]
¢þ
>WENV181326869
OFLN01001293
[OFLN] metagenome; faeces
285
376
+
Ser
TGA
[ENA]
¢þ
>WENV181326857
OFLN01001088
[OFLN] metagenome; faeces
319
246
-
His
GTG
[ENA]
¢þ
>WENV181326865
OFLN01001235
[OFLN] metagenome; faeces
322
397
+
Ala
TGC
[ENA]
¢þ
>WENV181326836
OFLN01000351
[OFLN] metagenome; faeces
360
276
-
Tyr
GTA
[ENA]
¢þ
>WENV181326870
OFLN01001293
[OFLN] metagenome; faeces
383
458
+
Asp
GTC
[ENA]
¢þ
>WENV181326862
OFLN01001200
[OFLN] metagenome; faeces
394
319
-
Thr
GGT
[ENA]
¢þ
>WENV181326856
OFLN01001088
[OFLN] metagenome; faeces
395
322
-
Trp
CCA
[ENA]
¢þ
>WENV181326861
OFLN01001200
[OFLN] metagenome; faeces
475
401
-
Gly
TCC
[ENA]
¢þ
>WENV181326855
OFLN01001088
[OFLN] metagenome; faeces
487
404
-
Tyr
GTA
[ENA]
¢þ
>WENV181326854
OFLN01001088
[OFLN] metagenome; faeces
567
492
-
Thr
TGT
[ENA]
¢þ
>WENV181326863
OFLN01001214
[OFLN] metagenome; faeces
647
572
-
Phe
GAA
[ENA]
¢þ
>WENV181326853
OFLN01001088
[OFLN] metagenome; faeces
649
575
-
Phe
GAA
[ENA]
¢þ
>WENV181326851
OFLN01000801
[OFLN] metagenome; faeces
769
694
-
Arg
TCT
[ENA]
¢þ
>WENV181326852
OFLN01001088
[OFLN] metagenome; faeces
826
753
-
fMet
CAT
[ENA]
¢þ
>WENV181326732
OFLN01000017
[OFLN] metagenome; faeces
1248
1172
-
Arg
TCT
[ENA]
¢þ
>WENV181326776
OFLN01000070
[OFLN] metagenome; faeces
1293
1217
-
Pro
GGG
[ENA]
¢þ
>WENV181326837
OFLN01000389
[OFLN] metagenome; faeces
1815
1889
+
Glu
TTC
[ENA]
¢þ
>WENV181326838
OFLN01000389
[OFLN] metagenome; faeces
1895
1967
+
Asp
GTC
[ENA]
¢þ
>WENV181326849
OFLN01000636
[OFLN] metagenome; faeces
2094
2020
-
Asn
GTT
[ENA]
¢þ
>WENV181326786
OFLN01000097
[OFLN] metagenome; faeces
2111
2024
-
Ser
GGA
[ENA]
¢þ
>WENV181326791
OFLN01000104
[OFLN] metagenome; faeces
2513
2438
-
Asn
GTT
[ENA]
¢þ
>WENV181326848
OFLN01000570
[OFLN] metagenome; faeces
2744
2819
+
Ala
GGC
[ENA]
¢þ
>WENV181326846
OFLN01000566
[OFLN] metagenome; faeces
2785
2860
+
Val
TAC
[ENA]
¢þ
>WENV181326825
OFLN01000241
[OFLN] metagenome; faeces
2822
2747
-
Ile2
CAT
[ENA]
¢þ
>WENV181326845
OFLN01000536
[OFLN] metagenome; faeces
2896
2823
-
Lys
TTT
[ENA]
¢þ
>WENV181326764
OFLN01000060
[OFLN] metagenome; faeces
2965
3040
+
Ala
GGC
[ENA]
¢þ
>WENV181326844
OFLN01000536
[OFLN] metagenome; faeces
2974
2900
-
Gln
TTG
[ENA]
¢þ
>WENV181326843
OFLN01000536
[OFLN] metagenome; faeces
3062
2979
-
Tyr
GTA
[ENA]
¢þ
>WENV181326765
OFLN01000060
[OFLN] metagenome; faeces
3082
3157
+
Ala
GGC
[ENA]
¢þ
>WENV181326842
OFLN01000536
[OFLN] metagenome; faeces
3154
3079
-
Val
TAC
[ENA]
¢þ
>WENV181326841
OFLN01000536
[OFLN] metagenome; faeces
3233
3160
-
Glu
TTC
[ENA]
¢þ
>WENV181326840
OFLN01000503
[OFLN] metagenome; faeces
3595
3670
+
Thr
TGT
[ENA]
¢þ
>WENV181326821
OFLN01000202
[OFLN] metagenome; faeces
4816
4741
-
Phe
GAA
[ENA]
¢þ
>WENV181326839
OFLN01000422
[OFLN] metagenome; faeces
5315
5232
-
Leu
CAA
[ENA]
¢þ
>WENV181326809
OFLN01000134
[OFLN] metagenome; faeces
6726
6634
-
Ser
TGA
[ENA]
¢þ
>WENV181326819
OFLN01000188
[OFLN] metagenome; faeces
8224
8300
+
Asp
GTC
[ENA]
¢þ
>WENV181326794
OFLN01000108
[OFLN] metagenome; faeces
9416
9492
+
Asp
GTC
[ENA]
¢þ
>WENV181326759
OFLN01000047
[OFLN] metagenome; faeces
9423
9499
+
Asp
GTC
[ENA]
¢þ
>WENV181326815
OFLN01000183
[OFLN] metagenome; faeces
10907
10982
+
Gly
GCC
[ENA]
¢þ
>WENV181326816
OFLN01000183
[OFLN] metagenome; faeces
11034
11107
+
Cys
GCA
[ENA]
¢þ
>WENV181326817
OFLN01000183
[OFLN] metagenome; faeces
11119
11205
+
Leu
TAA
[ENA]
¢þ
>WENV181326812
OFLN01000148
[OFLN] metagenome; faeces
12210
12136
-
Arg
TCT
[ENA]
¢þ
>WENV181326775
OFLN01000067
[OFLN] metagenome; faeces
12360
12273
-
Ser
TGA
[ENA]
¢þ
>WENV181326833
OFLN01000268
[OFLN] metagenome; faeces
12423
12509
+
Leu
GAG
[ENA]
¢þ
>WENV181326820
OFLN01000190
[OFLN] metagenome; faeces
13247
13323
+
Arg
TCT
[ENA]
¢þ
>WENV181326808
OFLN01000128
[OFLN] metagenome; faeces
14715
14625
-
Ser
GGA
[ENA]
¢þ
>WENV181326807
OFLN01000128
[OFLN] metagenome; faeces
14840
14767
-
Glu
TTC
[ENA]
¢þ
>WENV181326832
OFLN01000259
[OFLN] metagenome; faeces
14881
14956
+
Gly
GCC
[ENA]
¢þ
>WENV181326806
OFLN01000128
[OFLN] metagenome; faeces
14915
14841
-
Asn
GTT
[ENA]
¢þ
>WENV181326805
OFLN01000128
[OFLN] metagenome; faeces
14998
14925
-
Gly
TCC
[ENA]
¢þ
>WENV181326804
OFLN01000128
[OFLN] metagenome; faeces
15091
15016
-
His
GTG
[ENA]
¢þ
>WENV181326803
OFLN01000128
[OFLN] metagenome; faeces
15178
15104
-
Phe
GAA
[ENA]
¢þ
>WENV181326802
OFLN01000128
[OFLN] metagenome; faeces
15263
15188
-
Asp
GTC
[ENA]
¢þ
>WENV181326824
OFLN01000227
[OFLN] metagenome; faeces
15310
15223
-
Ser
GGA
[ENA]
¢þ
>WENV181326801
OFLN01000128
[OFLN] metagenome; faeces
15351
15278
-
fMet
CAT
[ENA]
¢þ
>WENV181326831
OFLN01000251
[OFLN] metagenome; faeces
15606
15532
-
Gln
CTG
[ENA]
¢þ
>WENV181326830
OFLN01000251
[OFLN] metagenome; faeces
15778
15704
-
Gln
CTG
[ENA]
¢þ
>WENV181326829
OFLN01000251
[OFLN] metagenome; faeces
15900
15824
-
Met
CAT
[ENA]
¢þ
>WENV181326828
OFLN01000251
[OFLN] metagenome; faeces
15996
15922
-
Gln
TTG
[ENA]
¢þ
>WENV181326772
OFLN01000063
[OFLN] metagenome; faeces
17115
17191
+
Arg
TCT
[ENA]
¢þ
>WENV181326822
OFLN01000221
[OFLN] metagenome; faeces
18746
18820
+
Asn
GTT
[ENA]
¢þ
>WENV181326774
OFLN01000067
[OFLN] metagenome; faeces
18795
18708
-
Ser
TGA
[ENA]
¢þ
>WENV181326823
OFLN01000221
[OFLN] metagenome; faeces
18823
18913
+
Ser
GCT
[ENA]
¢þ
>WENV181326766
OFLN01000060
[OFLN] metagenome; faeces
19961
19889
-
Arg
CCT
[ENA]
¢þ
>WENV181326762
OFLN01000057
[OFLN] metagenome; faeces
20988
20916
-
Arg
CCT
[ENA]
¢þ
>WENV181326773
OFLN01000064
[OFLN] metagenome; faeces
21867
21954
+
Ser
TGA
[ENA]
¢þ
>WENV181326814
OFLN01000176
[OFLN] metagenome; faeces
28919
28994
+
Gly
GCC
[ENA]
¢þ
>WENV181326813
OFLN01000155
[OFLN] metagenome; faeces
30234
30163
-
Arg
CCG
[ENA]
¢þ
>WENV181326798
OFLN01000124
[OFLN] metagenome; faeces
33068
33144
+
Val
GAC
[ENA]
¢þ
>WENV181326799
OFLN01000124
[OFLN] metagenome; faeces
33149
33225
+
Val
GAC
[ENA]
¢þ
>WENV181326778
OFLN01000076
[OFLN] metagenome; faeces
33347
33271
-
Pro
GGG
[ENA]
¢þ
>WENV181326793
OFLN01000105
[OFLN] metagenome; faeces
35937
35861
-
fMet
CAT
[ENA]
¢þ
>WENV181326783
OFLN01000085
[OFLN] metagenome; faeces
36522
36616
+
SeC
TCA
[ENA]
¢þ
>WENV181326795
OFLN01000108
[OFLN] metagenome; faeces
38875
38950
+
Thr
CGT
[ENA]
¢þ
>WENV181326810
OFLN01000137
[OFLN] metagenome; faeces
38966
39041
+
Val
TAC
[ENA]
¢þ
>WENV181326811
OFLN01000137
[OFLN] metagenome; faeces
39048
39123
+
Thr
TGT
[ENA]
¢þ
>WENV181326792
OFLN01000105
[OFLN] metagenome; faeces
39804
39718
-
Leu
GAG
[ENA]
¢þ
>WENV181326797
OFLN01000123
[OFLN] metagenome; faeces
41228
41141
-
Ser
GGA
[ENA]
¢þ
>WENV181326800
OFLN01000127
[OFLN] metagenome; faeces
41626
41709
+
Leu
CAA
[ENA]
¢þ
>WENV181326796
OFLN01000119
[OFLN] metagenome; faeces
42321
42245
-
fMet
CAT
[ENA]
¢þ
>WENV181326788
OFLN01000102
[OFLN] metagenome; faeces
45244
45319
+
Ile2
CAT
[ENA]
¢þ
>WENV181326789
OFLN01000102
[OFLN] metagenome; faeces
45327
45403
+
Arg
TCG
[ENA]
¢þ
>WENV181326790
OFLN01000102
[OFLN] metagenome; faeces
45417
45493
+
Arg
TCT
[ENA]
¢þ
>WENV181326728
OFLN01000014
[OFLN] metagenome; faeces
51051
50978
-
Gly
CCC
[ENA]
¢þ
>WENV181326763
OFLN01000058
[OFLN] metagenome; faeces
52641
52716
+
Phe
GAA
[ENA]
¢þ
>WENV181326787
OFLN01000100
[OFLN] metagenome; faeces
54251
54326
+
Met
CAT
[ENA]
¢þ
>WENV181326761
OFLN01000049
[OFLN] metagenome; faeces
54260
54336
+
Pro
CGG
[ENA]
¢þ
>WENV181326784
OFLN01000090
[OFLN] metagenome; faeces
56278
56354
+
Pro
TGG
[ENA]
¢þ
>WENV181326753
OFLN01000036
[OFLN] metagenome; faeces
59701
59626
-
Ile2
CAT
[ENA]
¢þ
>WENV181326754
OFLN01000041
[OFLN] metagenome; faeces
60205
60130
-
Thr
CGT
[ENA]
¢þ
>WENV181326785
OFLN01000093
[OFLN] metagenome; faeces
61409
61485
+
Met
CAT
[ENA]
¢þ
>WENV181326770
OFLN01000061
[OFLN] metagenome; faeces
63151
63057
-
SeC
TCA
[ENA]
¢þ
>WENV181326780
OFLN01000080
[OFLN] metagenome; faeces
66449
66374
-
Asn
GTT
[ENA]
¢þ
>WENV181326779
OFLN01000080
[OFLN] metagenome; faeces
68197
68271
+
Asn
GTT
[ENA]
¢þ
>WENV181326777
OFLN01000074
[OFLN] metagenome; faeces
74556
74481
-
Trp
CCA
[ENA]
¢þ
>WENV181326746
OFLN01000032
[OFLN] metagenome; faeces
76686
76613
-
Gly
CCC
[ENA]
¢þ
>WENV181326760
OFLN01000047
[OFLN] metagenome; faeces
77083
77008
-
Thr
CGT
[ENA]
¢þ
>WENV181326752
OFLN01000034
[OFLN] metagenome; faeces
78002
77926
-
Pro
TGG
[ENA]
¢þ
>WENV181326751
OFLN01000034
[OFLN] metagenome; faeces
78131
78045
-
Leu
CAG
[ENA]
¢þ
>WENV181326750
OFLN01000034
[OFLN] metagenome; faeces
78227
78152
-
His
GTG
[ENA]
¢þ
>WENV181326749
OFLN01000034
[OFLN] metagenome; faeces
78362
78286
-
Arg
CCG
[ENA]
¢þ
>WENV181326742
OFLN01000021
[OFLN] metagenome; faeces
81005
80919
-
Leu
TAA
[ENA]
¢þ
>WENV181326741
OFLN01000021
[OFLN] metagenome; faeces
81092
81019
-
Cys
GCA
[ENA]
¢þ
>WENV181326771
OFLN01000062
[OFLN] metagenome; faeces
81187
81271
+
Leu
CAA
[ENA]
¢þ
>WENV181326740
OFLN01000021
[OFLN] metagenome; faeces
81206
81131
-
Gly
GCC
[ENA]
¢þ
>WENV181326758
OFLN01000046
[OFLN] metagenome; faeces
99573
99497
-
Val
GAC
[ENA]
¢þ
>WENV181326757
OFLN01000045
[OFLN] metagenome; faeces
100585
100511
-
Gln
CTG
[ENA]
¢þ
>WENV181326756
OFLN01000045
[OFLN] metagenome; faeces
100697
100623
-
Gln
CTG
[ENA]
¢þ
>WENV181326755
OFLN01000043
[OFLN] metagenome; faeces
100842
100767
-
Asn
GTT
[ENA]
¢þ
>WENV181326745
OFLN01000031
[OFLN] metagenome; faeces
102888
102972
+
Leu
CAA
[ENA]
¢þ
>WENV181326747
OFLN01000033
[OFLN] metagenome; faeces
105865
105771
-
SeC
TCA
[ENA]
¢þ
>WENV181326744
OFLN01000030
[OFLN] metagenome; faeces
106273
106186
-
Ser
TGA
[ENA]
¢þ
>WENV181326739
OFLN01000021
[OFLN] metagenome; faeces
106364
106275
-
Ser
CGA
[ENA]
¢þ
>WENV181326735
OFLN01000021
[OFLN] metagenome; faeces
107356
107431
+
Asn
GTT
[ENA]
¢þ
>WENV181326748
OFLN01000034
[OFLN] metagenome; faeces
112906
112831
-
Trp
CCA
[ENA]
¢þ
>WENV181326722
OFLN01000004
[OFLN] metagenome; faeces
120609
120523
-
Leu
TAA
[ENA]
¢þ
>WENV181326721
OFLN01000004
[OFLN] metagenome; faeces
120695
120622
-
Cys
GCA
[ENA]
¢þ
>WENV181326720
OFLN01000004
[OFLN] metagenome; faeces
120824
120749
-
Gly
GCC
[ENA]
¢þ
>WENV181326714
OFLN01000003
[OFLN] metagenome; faeces
121042
121118
+
fMet
CAT
[ENA]
¢þ
>WENV181326715
OFLN01000003
[OFLN] metagenome; faeces
121152
121228
+
fMet
CAT
[ENA]
¢þ
>WENV181326716
OFLN01000003
[OFLN] metagenome; faeces
121262
121338
+
fMet
CAT
[ENA]
¢þ
>WENV181326743
OFLN01000024
[OFLN] metagenome; faeces
122878
122802
-
Pro
CGG
[ENA]
¢þ
>WENV181326734
OFLN01000018
[OFLN] metagenome; faeces
127807
127732
-
Phe
GAA
[ENA]
¢þ
>WENV181326738
OFLN01000021
[OFLN] metagenome; faeces
141597
141522
-
Asn
GTT
[ENA]
¢þ
>WENV181326731
OFLN01000015
[OFLN] metagenome; faeces
142998
142911
-
Ser
GGA
[ENA]
¢þ
>WENV181326736
OFLN01000021
[OFLN] metagenome; faeces
143375
143450
+
Asn
GTT
[ENA]
¢þ
>WENV181326723
OFLN01000009
[OFLN] metagenome; faeces
144777
144852
+
Ile2
CAT
[ENA]
¢þ
>WENV181326727
OFLN01000014
[OFLN] metagenome; faeces
151434
151509
+
Phe
GAA
[ENA]
¢þ
>WENV181326737
OFLN01000021
[OFLN] metagenome; faeces
151642
151717
+
Asn
GTT
[ENA]
¢þ
>WENV181326724
OFLN01000010
[OFLN] metagenome; faeces
155195
155271
+
Arg
TCT
[ENA]
¢þ
>WENV181326712
OFLN01000002
[OFLN] metagenome; faeces
165256
165332
+
Pro
GGG
[ENA]
¢þ
>WENV181326733
OFLN01000018
[OFLN] metagenome; faeces
168534
168608
+
Gly
GCC
[ENA]
¢þ
>WENV181326725
OFLN01000010
[OFLN] metagenome; faeces
173950
174025
+
Thr
TGT
[ENA]
¢þ
>WENV181326726
OFLN01000013
[OFLN] metagenome; faeces
176704
176780
+
fMet
CAT
[ENA]
¢þ
>WENV181326717
OFLN01000003
[OFLN] metagenome; faeces
193741
193668
-
Gly
CCC
[ENA]
¢þ
>WENV181326719
OFLN01000004
[OFLN] metagenome; faeces
196250
196161
-
Ser
CGA
[ENA]
¢þ
>WENV181326718
OFLN01000004
[OFLN] metagenome; faeces
197242
197317
+
Asn
GTT
[ENA]
¢þ
>WENV181326713
OFLN01000002
[OFLN] metagenome; faeces
335235
335309
+
Arg
CCT
[ENA]
¢þ
>WENV181326709
OFLN01000001
[OFLN] metagenome; faeces
573809
573885
+
Val
GAC
[ENA]
¢þ
>WENV181326710
OFLN01000001
[OFLN] metagenome; faeces
573890
573966
+
Val
GAC
[ENA]
¢þ
>WENV181326711
OFLN01000001
[OFLN] metagenome; faeces
573981
574057
+
Val
GAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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