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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFLP] metagenome; faeces
HIT:
159 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181327262
OFLP01000021
[OFLP] metagenome; faeces
3
77
+
Arg
ACG
[ENA]
¢þ
>WENV181327268
OFLP01000030
[OFLP] metagenome; faeces
5
77
+
Arg
CCT
[ENA]
¢þ
>WENV181327283
OFLP01000079
[OFLP] metagenome; faeces
5
79
+
Arg
CCT
[ENA]
¢þ
>WENV181327266
OFLP01000028
[OFLP] metagenome; faeces
8
84
+
Arg
ACG
[ENA]
¢þ
>WENV181327298
OFLP01000247
[OFLP] metagenome; faeces
28
112
+
Leu
TAG
[ENA]
¢þ
>WENV181327304
OFLP01000255
[OFLP] metagenome; faeces
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV181327330
OFLP01000461
[OFLP] metagenome; faeces
77
2
-
Ala
GGC
[ENA]
¢þ
>WENV181327287
OFLP01000123
[OFLP] metagenome; faeces
77
2
-
Gly
GCC
[ENA]
¢þ
>WENV181327289
OFLP01000149
[OFLP] metagenome; faeces
84
9
-
Ile2
CAT
[ENA]
¢þ
>WENV181327359
OFLP01002498
[OFLP] metagenome; faeces
102
176
+
Asp
GTC
[ENA]
¢þ
>WENV181327306
OFLP01000274
[OFLP] metagenome; faeces
122
35
-
Ser
TGA
[ENA]
¢þ
>WENV181327356
OFLP01001897
[OFLP] metagenome; faeces
124
200
+
Ile
GAT
[ENA]
¢þ
>WENV181327282
OFLP01000078
[OFLP] metagenome; faeces
125
200
+
Trp
CCA
[ENA]
¢þ
>WENV181327293
OFLP01000153
[OFLP] metagenome; faeces
127
203
+
Asp
GTC
[ENA]
¢þ
>WENV181327354
OFLP01001867
[OFLP] metagenome; faeces
128
201
+
Lys
CTT
[ENA]
¢þ
>WENV181327299
OFLP01000247
[OFLP] metagenome; faeces
136
210
+
Gln
TTG
[ENA]
¢þ
>WENV181327358
OFLP01002327
[OFLP] metagenome; faeces
153
228
+
His
GTG
[ENA]
¢þ
>WENV181327286
OFLP01000123
[OFLP] metagenome; faeces
221
146
-
Gly
GCC
[ENA]
¢þ
>WENV181327360
OFLP01002498
[OFLP] metagenome; faeces
236
313
+
Phe
GAA
[ENA]
¢þ
>WENV181327300
OFLP01000247
[OFLP] metagenome; faeces
247
321
+
Gln
TTG
[ENA]
¢þ
>WENV181327337
OFLP01000715
[OFLP] metagenome; faeces
267
191
-
Pro
CGG
[ENA]
¢þ
>WENV181327342
OFLP01000873
[OFLP] metagenome; faeces
273
197
-
Val
GAC
[ENA]
¢þ
>WENV181327355
OFLP01001891
[OFLP] metagenome; faeces
289
199
-
Ser
GCT
[ENA]
¢þ
>WENV181327357
OFLP01001897
[OFLP] metagenome; faeces
306
381
+
Ala
TGC
[ENA]
¢þ
>WENV181327267
OFLP01000028
[OFLP] metagenome; faeces
313
389
+
Arg
ACG
[ENA]
¢þ
>WENV181327334
OFLP01000607
[OFLP] metagenome; faeces
328
243
-
Ser
GGA
[ENA]
¢þ
>WENV181327363
OFLP01003166
[OFLP] metagenome; faeces
345
270
-
Glu
CTC
[ENA]
¢þ
>WENV181327301
OFLP01000247
[OFLP] metagenome; faeces
345
421
+
Met
CAT
[ENA]
¢þ
>WENV181327341
OFLP01000873
[OFLP] metagenome; faeces
354
278
-
Val
GAC
[ENA]
¢þ
>WENV181327350
OFLP01001649
[OFLP] metagenome; faeces
357
283
-
Val
CAC
[ENA]
¢þ
>WENV181327281
OFLP01000070
[OFLP] metagenome; faeces
377
293
-
Tyr
GTA
[ENA]
¢þ
>WENV181327362
OFLP01003087
[OFLP] metagenome; faeces
387
462
+
Arg
TCT
[ENA]
¢þ
>WENV181327351
OFLP01001687
[OFLP] metagenome; faeces
405
478
+
Arg
CCG
[ENA]
¢þ
>WENV181327340
OFLP01000873
[OFLP] metagenome; faeces
435
359
-
Val
GAC
[ENA]
¢þ
>WENV181327333
OFLP01000527
[OFLP] metagenome; faeces
440
514
+
Arg
CCT
[ENA]
¢þ
>WENV181327302
OFLP01000247
[OFLP] metagenome; faeces
469
543
+
Gln
CTG
[ENA]
¢þ
>WENV181327347
OFLP01001326
[OFLP] metagenome; faeces
476
402
-
Ile2
CAT
[ENA]
¢þ
>WENV181327264
OFLP01000024
[OFLP] metagenome; faeces
500
584
+
Leu
CAA
[ENA]
¢þ
>WENV181327352
OFLP01001780
[OFLP] metagenome; faeces
503
578
+
Val
TAC
[ENA]
¢þ
>WENV181327349
OFLP01001502
[OFLP] metagenome; faeces
519
593
+
Leu
TAA
[ENA]
¢þ
>WENV181327361
OFLP01002563
[OFLP] metagenome; faeces
549
624
+
Thr
CGT
[ENA]
¢þ
>WENV181327353
OFLP01001789
[OFLP] metagenome; faeces
594
511
-
Leu
TAG
[ENA]
¢þ
>WENV181327345
OFLP01001231
[OFLP] metagenome; faeces
606
679
+
Ala
GGC
[ENA]
¢þ
>WENV181327303
OFLP01000247
[OFLP] metagenome; faeces
619
693
+
Gln
CTG
[ENA]
¢þ
>WENV181327343
OFLP01001049
[OFLP] metagenome; faeces
634
720
+
Ser
CGA
[ENA]
¢þ
>WENV181327339
OFLP01000811
[OFLP] metagenome; faeces
736
652
-
Leu
CAA
[ENA]
¢þ
>WENV181327348
OFLP01001476
[OFLP] metagenome; faeces
761
686
-
Ile
GAT
[ENA]
¢þ
>WENV181327332
OFLP01000493
[OFLP] metagenome; faeces
761
833
+
Gly
TCC
[ENA]
¢þ
>WENV181327346
OFLP01001292
[OFLP] metagenome; faeces
850
936
+
Leu
GAG
[ENA]
¢þ
>WENV181327318
OFLP01000311
[OFLP] metagenome; faeces
1017
942
-
Asn
GTT
[ENA]
¢þ
>WENV181327325
OFLP01000398
[OFLP] metagenome; faeces
1142
1067
-
Asn
GTT
[ENA]
¢þ
>WENV181327344
OFLP01001065
[OFLP] metagenome; faeces
1228
1157
-
Gly
CCC
[ENA]
¢þ
>WENV181327336
OFLP01000682
[OFLP] metagenome; faeces
1344
1271
-
Ala
TGC
[ENA]
¢þ
>WENV181327338
OFLP01000718
[OFLP] metagenome; faeces
1516
1599
+
Leu
CAG
[ENA]
¢þ
>WENV181327316
OFLP01000297
[OFLP] metagenome; faeces
1615
1540
-
Ala
TGC
[ENA]
¢þ
>WENV181327335
OFLP01000681
[OFLP] metagenome; faeces
1641
1716
+
Ala
CGC
[ENA]
¢þ
>WENV181327315
OFLP01000297
[OFLP] metagenome; faeces
1705
1632
-
Pro
TGG
[ENA]
¢þ
>WENV181327314
OFLP01000297
[OFLP] metagenome; faeces
1808
1732
-
Arg
ACG
[ENA]
¢þ
>WENV181327313
OFLP01000297
[OFLP] metagenome; faeces
1908
1820
-
Leu
TAA
[ENA]
¢þ
>WENV181327312
OFLP01000297
[OFLP] metagenome; faeces
1987
1916
-
Gly
GCC
[ENA]
¢þ
>WENV181327319
OFLP01000315
[OFLP] metagenome; faeces
2075
1981
-
SeC
TCA
[ENA]
¢þ
>WENV181327311
OFLP01000297
[OFLP] metagenome; faeces
2079
2005
-
Lys
TTT
[ENA]
¢þ
>WENV181327263
OFLP01000023
[OFLP] metagenome; faeces
2081
2156
+
Phe
GAA
[ENA]
¢þ
>WENV181327324
OFLP01000398
[OFLP] metagenome; faeces
2134
2223
+
Ser
CGA
[ENA]
¢þ
>WENV181327310
OFLP01000297
[OFLP] metagenome; faeces
2160
2085
-
Thr
TGT
[ENA]
¢þ
>WENV181327309
OFLP01000297
[OFLP] metagenome; faeces
2242
2167
-
Val
TAC
[ENA]
¢þ
>WENV181327297
OFLP01000221
[OFLP] metagenome; faeces
2263
2336
+
Gly
CCC
[ENA]
¢þ
>WENV181327308
OFLP01000297
[OFLP] metagenome; faeces
2321
2248
-
Glu
TTC
[ENA]
¢þ
>WENV181327307
OFLP01000297
[OFLP] metagenome; faeces
2396
2322
-
Asn
GTT
[ENA]
¢þ
>WENV181327331
OFLP01000480
[OFLP] metagenome; faeces
2744
2831
+
Ser
GGA
[ENA]
¢þ
>WENV181327326
OFLP01000406
[OFLP] metagenome; faeces
2771
2692
-
Gln
TTG
[ENA]
¢þ
>WENV181327317
OFLP01000311
[OFLP] metagenome; faeces
2775
2850
+
Asn
GTT
[ENA]
¢þ
>WENV181327328
OFLP01000461
[OFLP] metagenome; faeces
2776
2851
+
Val
TAC
[ENA]
¢þ
>WENV181327329
OFLP01000461
[OFLP] metagenome; faeces
2898
2973
+
Val
TAC
[ENA]
¢þ
>WENV181327276
OFLP01000060
[OFLP] metagenome; faeces
2959
3035
+
fMet
CAT
[ENA]
¢þ
>WENV181327327
OFLP01000409
[OFLP] metagenome; faeces
3512
3429
-
Ser
TGA
[ENA]
¢þ
>WENV181327320
OFLP01000361
[OFLP] metagenome; faeces
3637
3712
+
Thr
TGT
[ENA]
¢þ
>WENV181327321
OFLP01000361
[OFLP] metagenome; faeces
3723
3807
+
Tyr
GTA
[ENA]
¢þ
>WENV181327322
OFLP01000361
[OFLP] metagenome; faeces
3923
3997
+
Gly
TCC
[ENA]
¢þ
>WENV181327323
OFLP01000361
[OFLP] metagenome; faeces
4003
4078
+
Thr
GGT
[ENA]
¢þ
>WENV181327270
OFLP01000037
[OFLP] metagenome; faeces
5846
5770
-
Arg
TCT
[ENA]
¢þ
>WENV181327305
OFLP01000264
[OFLP] metagenome; faeces
6052
5977
-
Asn
GTT
[ENA]
¢þ
>WENV181327294
OFLP01000153
[OFLP] metagenome; faeces
9580
9656
+
Asp
GTC
[ENA]
¢þ
>WENV181327295
OFLP01000205
[OFLP] metagenome; faeces
9611
9697
+
Leu
CAG
[ENA]
¢þ
>WENV181327296
OFLP01000205
[OFLP] metagenome; faeces
9729
9815
+
Leu
CAG
[ENA]
¢þ
>WENV181327288
OFLP01000141
[OFLP] metagenome; faeces
12760
12846
+
Leu
GAG
[ENA]
¢þ
>WENV181327290
OFLP01000151
[OFLP] metagenome; faeces
12783
12858
+
Gly
GCC
[ENA]
¢þ
>WENV181327291
OFLP01000151
[OFLP] metagenome; faeces
12899
12972
+
Cys
GCA
[ENA]
¢þ
>WENV181327292
OFLP01000151
[OFLP] metagenome; faeces
12986
13072
+
Leu
TAA
[ENA]
¢þ
>WENV181327272
OFLP01000046
[OFLP] metagenome; faeces
17690
17766
+
Arg
CCG
[ENA]
¢þ
>WENV181327273
OFLP01000046
[OFLP] metagenome; faeces
17822
17897
+
His
GTG
[ENA]
¢þ
>WENV181327274
OFLP01000046
[OFLP] metagenome; faeces
17921
18007
+
Leu
CAG
[ENA]
¢þ
>WENV181327275
OFLP01000046
[OFLP] metagenome; faeces
18050
18126
+
Pro
TGG
[ENA]
¢þ
>WENV181327229
OFLP01000002
[OFLP] metagenome; faeces
18294
18209
-
Leu
CAG
[ENA]
¢þ
>WENV181327285
OFLP01000079
[OFLP] metagenome; faeces
20477
20402
-
Ala
GGC
[ENA]
¢þ
>WENV181327284
OFLP01000079
[OFLP] metagenome; faeces
20594
20519
-
Ala
GGC
[ENA]
¢þ
>WENV181327277
OFLP01000068
[OFLP] metagenome; faeces
22012
22087
+
Lys
TTT
[ENA]
¢þ
>WENV181327278
OFLP01000068
[OFLP] metagenome; faeces
22213
22288
+
Val
TAC
[ENA]
¢þ
>WENV181327279
OFLP01000068
[OFLP] metagenome; faeces
22293
22368
+
Lys
TTT
[ENA]
¢þ
>WENV181327280
OFLP01000068
[OFLP] metagenome; faeces
22518
22593
+
Val
TAC
[ENA]
¢þ
>WENV181327220
OFLP01000002
[OFLP] metagenome; faeces
28403
28476
+
Gly
CCC
[ENA]
¢þ
>WENV181327271
OFLP01000040
[OFLP] metagenome; faeces
28659
28575
-
Leu
CAA
[ENA]
¢þ
>WENV181327257
OFLP01000015
[OFLP] metagenome; faeces
31420
31345
-
Thr
TGT
[ENA]
¢þ
>WENV181327269
OFLP01000030
[OFLP] metagenome; faeces
31526
31451
-
Thr
TGT
[ENA]
¢þ
>WENV181327265
OFLP01000026
[OFLP] metagenome; faeces
38293
38369
+
Arg
TCT
[ENA]
¢þ
>WENV181327254
OFLP01000011
[OFLP] metagenome; faeces
43723
43642
-
Leu
TAG
[ENA]
¢þ
>WENV181327253
OFLP01000011
[OFLP] metagenome; faeces
43890
43817
-
Thr
CGT
[ENA]
¢þ
>WENV181327259
OFLP01000020
[OFLP] metagenome; faeces
44496
44588
+
Ser
GCT
[ENA]
¢þ
>WENV181327260
OFLP01000020
[OFLP] metagenome; faeces
44593
44669
+
Arg
ACG
[ENA]
¢þ
>WENV181327261
OFLP01000020
[OFLP] metagenome; faeces
44820
44896
+
Arg
ACG
[ENA]
¢þ
>WENV181327258
OFLP01000019
[OFLP] metagenome; faeces
45438
45363
-
Gly
GCC
[ENA]
¢þ
>WENV181327239
OFLP01000003
[OFLP] metagenome; faeces
48801
48726
-
His
GTG
[ENA]
¢þ
>WENV181327252
OFLP01000008
[OFLP] metagenome; faeces
50508
50584
+
Pro
GGG
[ENA]
¢þ
>WENV181327249
OFLP01000006
[OFLP] metagenome; faeces
56589
56663
+
Thr
TGT
[ENA]
¢þ
>WENV181327256
OFLP01000013
[OFLP] metagenome; faeces
58821
58895
+
Arg
TCT
[ENA]
¢þ
>WENV181327255
OFLP01000012
[OFLP] metagenome; faeces
63682
63754
+
Arg
CCT
[ENA]
¢þ
>WENV181327248
OFLP01000004
[OFLP] metagenome; faeces
64285
64197
-
Leu
GAG
[ENA]
¢þ
>WENV181327251
OFLP01000006
[OFLP] metagenome; faeces
98062
97989
-
Ala
TGC
[ENA]
¢þ
>WENV181327250
OFLP01000006
[OFLP] metagenome; faeces
98178
98104
-
Ile
GAT
[ENA]
¢þ
>WENV181327230
OFLP01000003
[OFLP] metagenome; faeces
113925
113999
+
Val
TAC
[ENA]
¢þ
>WENV181327221
OFLP01000002
[OFLP] metagenome; faeces
138065
138138
+
Glu
CTC
[ENA]
¢þ
>WENV181327222
OFLP01000002
[OFLP] metagenome; faeces
138177
138251
+
Gln
CTG
[ENA]
¢þ
>WENV181327228
OFLP01000002
[OFLP] metagenome; faeces
150308
150221
-
Ser
GGA
[ENA]
¢þ
>WENV181327240
OFLP01000004
[OFLP] metagenome; faeces
163240
163313
+
Gly
GCC
[ENA]
¢þ
>WENV181327241
OFLP01000004
[OFLP] metagenome; faeces
163341
163412
+
Cys
GCA
[ENA]
¢þ
>WENV181327242
OFLP01000004
[OFLP] metagenome; faeces
163452
163524
+
Val
GAC
[ENA]
¢þ
>WENV181327243
OFLP01000004
[OFLP] metagenome; faeces
163572
163645
+
Val
CAC
[ENA]
¢þ
>WENV181327244
OFLP01000004
[OFLP] metagenome; faeces
163676
163751
+
Gly
GCC
[ENA]
¢þ
>WENV181327223
OFLP01000002
[OFLP] metagenome; faeces
174610
174683
+
Lys
TTT
[ENA]
¢þ
>WENV181327219
OFLP01000001
[OFLP] metagenome; faeces
180564
180491
-
Arg
CCT
[ENA]
¢þ
>WENV181327245
OFLP01000004
[OFLP] metagenome; faeces
180581
180655
+
Pro
GGG
[ENA]
¢þ
>WENV181327224
OFLP01000002
[OFLP] metagenome; faeces
197390
197464
+
Lys
CTT
[ENA]
¢þ
>WENV181327231
OFLP01000003
[OFLP] metagenome; faeces
210174
210255
+
Leu
TAA
[ENA]
¢þ
>WENV181327218
OFLP01000001
[OFLP] metagenome; faeces
215921
215847
-
Ile2
CAT
[ENA]
¢þ
>WENV181327217
OFLP01000001
[OFLP] metagenome; faeces
221873
221797
-
Asp
GTC
[ENA]
¢þ
>WENV181327247
OFLP01000004
[OFLP] metagenome; faeces
233459
233386
-
Asn
GTT
[ENA]
¢þ
>WENV181327227
OFLP01000002
[OFLP] metagenome; faeces
242788
242712
-
fMet
CAT
[ENA]
¢þ
>WENV181327246
OFLP01000004
[OFLP] metagenome; faeces
243317
243244
-
Asn
GTT
[ENA]
¢þ
>WENV181327232
OFLP01000003
[OFLP] metagenome; faeces
245213
245287
+
Leu
CAA
[ENA]
¢þ
>WENV181327216
OFLP01000001
[OFLP] metagenome; faeces
250215
250141
-
Asp
GTC
[ENA]
¢þ
>WENV181327205
OFLP01000001
[OFLP] metagenome; faeces
251466
251539
+
Glu
TTC
[ENA]
¢þ
>WENV181327238
OFLP01000003
[OFLP] metagenome; faeces
255356
255282
-
Pro
TGG
[ENA]
¢þ
>WENV181327225
OFLP01000002
[OFLP] metagenome; faeces
257716
257790
+
Arg
CCG
[ENA]
¢þ
>WENV181327237
OFLP01000003
[OFLP] metagenome; faeces
262620
262548
-
Gln
TTG
[ENA]
¢þ
>WENV181327233
OFLP01000003
[OFLP] metagenome; faeces
273229
273302
+
Ala
GGC
[ENA]
¢þ
>WENV181327234
OFLP01000003
[OFLP] metagenome; faeces
273388
273461
+
Ala
GGC
[ENA]
¢þ
>WENV181327206
OFLP01000001
[OFLP] metagenome; faeces
283492
283567
+
Pro
CGG
[ENA]
¢þ
>WENV181327226
OFLP01000002
[OFLP] metagenome; faeces
287368
287441
+
Gly
TCC
[ENA]
¢þ
>WENV181327235
OFLP01000003
[OFLP] metagenome; faeces
293257
293331
+
Arg
ACG
[ENA]
¢þ
>WENV181327236
OFLP01000003
[OFLP] metagenome; faeces
293360
293434
+
Arg
ACG
[ENA]
¢þ
>WENV181327215
OFLP01000001
[OFLP] metagenome; faeces
303602
303516
-
Ser
TGA
[ENA]
¢þ
>WENV181327214
OFLP01000001
[OFLP] metagenome; faeces
329638
329553
-
Ser
CGA
[ENA]
¢þ
>WENV181327213
OFLP01000001
[OFLP] metagenome; faeces
372570
372483
-
Ser
GCT
[ENA]
¢þ
>WENV181327212
OFLP01000001
[OFLP] metagenome; faeces
379777
379703
-
Met
CAT
[ENA]
¢þ
>WENV181327211
OFLP01000001
[OFLP] metagenome; faeces
379936
379854
-
Tyr
GTA
[ENA]
¢þ
>WENV181327210
OFLP01000001
[OFLP] metagenome; faeces
426316
426242
-
Val
CAC
[ENA]
¢þ
>WENV181327209
OFLP01000001
[OFLP] metagenome; faeces
426436
426364
-
Val
GAC
[ENA]
¢þ
>WENV181327208
OFLP01000001
[OFLP] metagenome; faeces
426555
426482
-
Gly
GCC
[ENA]
¢þ
>WENV181327207
OFLP01000001
[OFLP] metagenome; faeces
449913
449838
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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