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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OFNM] sediment metagenome; Lake sediment
HIT:
111 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361277
OFNM01002041
[OFNM] sediment metagenome; Lake sediment
82
153
+
Gln
CTG
[ENA]
¢þ
>WENV181361280
OFNM01002254
[OFNM] sediment metagenome; Lake sediment
101
176
+
Lys
CTT
[ENA]
¢þ
>WENV181361247
OFNM01000770
[OFNM] sediment metagenome; Lake sediment
116
42
-
Ile
GAT
[ENA]
¢þ
>WENV181361272
OFNM01001776
[OFNM] sediment metagenome; Lake sediment
116
194
+
Arg
TCT
[ENA]
¢þ
>WENV181361274
OFNM01001846
[OFNM] sediment metagenome; Lake sediment
122
208
+
Leu
CAA
[ENA]
¢þ
>WENV181361258
OFNM01000999
[OFNM] sediment metagenome; Lake sediment
134
210
+
Met
CAT
[ENA]
¢þ
>WENV181361197
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
152
226
+
Gly
GCC
[ENA]
¢þ
>WENV181361304
OFNM01003791
[OFNM] sediment metagenome; Lake sediment
158
82
-
Lys
CTT
[ENA]
¢þ
>WENV181361276
OFNM01001957
[OFNM] sediment metagenome; Lake sediment
159
83
-
Ala
GGC
[ENA]
¢þ
>WENV181361292
OFNM01002670
[OFNM] sediment metagenome; Lake sediment
166
85
-
Pro
TGG
[ENA]
¢þ
>WENV181361278
OFNM01002041
[OFNM] sediment metagenome; Lake sediment
166
252
+
Trp
CCA
[ENA]
¢þ
>WENV181361297
OFNM01003129
[OFNM] sediment metagenome; Lake sediment
175
250
+
His
GTG
[ENA]
¢þ
>WENV181361281
OFNM01002254
[OFNM] sediment metagenome; Lake sediment
185
261
+
Arg
ACG
[ENA]
¢þ
>WENV181361245
OFNM01000768
[OFNM] sediment metagenome; Lake sediment
186
273
+
Ser
TGA
[ENA]
¢þ
>WENV181361246
OFNM01000770
[OFNM] sediment metagenome; Lake sediment
207
285
+
Arg
TCG
[ENA]
¢þ
>WENV181361284
OFNM01002261
[OFNM] sediment metagenome; Lake sediment
215
140
-
Lys
CTT
[ENA]
¢þ
>WENV181361270
OFNM01001633
[OFNM] sediment metagenome; Lake sediment
232
316
+
Leu
TAG
[ENA]
¢þ
>WENV181361254
OFNM01000966
[OFNM] sediment metagenome; Lake sediment
236
310
+
fMet
CAT
[ENA]
¢þ
>WENV181361289
OFNM01002362
[OFNM] sediment metagenome; Lake sediment
240
158
-
Tyr
GTA
[ENA]
¢þ
>WENV181361300
OFNM01003692
[OFNM] sediment metagenome; Lake sediment
242
314
+
Gly
TCC
[ENA]
¢þ
>WENV181361303
OFNM01003729
[OFNM] sediment metagenome; Lake sediment
247
173
-
Gly
CCC
[ENA]
¢þ
>WENV181361298
OFNM01003326
[OFNM] sediment metagenome; Lake sediment
247
324
+
Glu
TTC
[ENA]
¢þ
>WENV181361228
OFNM01000137
[OFNM] sediment metagenome; Lake sediment
248
174
-
Glu
TTC
[ENA]
¢þ
>WENV181361305
OFNM01003829
[OFNM] sediment metagenome; Lake sediment
255
326
+
Lys
CTT
[ENA]
¢þ
>WENV181361279
OFNM01002041
[OFNM] sediment metagenome; Lake sediment
262
338
+
Asp
GTC
[ENA]
¢þ
>WENV181361251
OFNM01000959
[OFNM] sediment metagenome; Lake sediment
263
338
+
Phe
GAA
[ENA]
¢þ
>WENV181361250
OFNM01000958
[OFNM] sediment metagenome; Lake sediment
276
352
+
Arg
TCT
[ENA]
¢þ
>WENV181361307
OFNM01003851
[OFNM] sediment metagenome; Lake sediment
279
202
-
Leu
CAG
[ENA]
¢þ
>WENV181361294
OFNM01002958
[OFNM] sediment metagenome; Lake sediment
285
361
+
Ile
GAT
[ENA]
¢þ
>WENV181361299
OFNM01003689
[OFNM] sediment metagenome; Lake sediment
287
359
+
Lys
TTT
[ENA]
¢þ
>WENV181361295
OFNM01002991
[OFNM] sediment metagenome; Lake sediment
288
213
-
Phe
GAA
[ENA]
¢þ
>WENV181361255
OFNM01000966
[OFNM] sediment metagenome; Lake sediment
313
402
+
Ser
CGA
[ENA]
¢þ
>WENV181361286
OFNM01002336
[OFNM] sediment metagenome; Lake sediment
315
241
-
Val
CAC
[ENA]
¢þ
>WENV181361301
OFNM01003692
[OFNM] sediment metagenome; Lake sediment
317
390
+
Val
CAC
[ENA]
¢þ
>WENV181361306
OFNM01003829
[OFNM] sediment metagenome; Lake sediment
334
411
+
Arg
CCG
[ENA]
¢þ
>WENV181361271
OFNM01001723
[OFNM] sediment metagenome; Lake sediment
358
284
-
Phe
GAA
[ENA]
¢þ
>WENV181361264
OFNM01001361
[OFNM] sediment metagenome; Lake sediment
377
304
-
Cys
GCA
[ENA]
¢þ
>WENV181361296
OFNM01003112
[OFNM] sediment metagenome; Lake sediment
388
313
-
Gly
GCC
[ENA]
¢þ
>WENV181361282
OFNM01002254
[OFNM] sediment metagenome; Lake sediment
391
467
+
Asp
GTC
[ENA]
¢þ
>WENV181361302
OFNM01003729
[OFNM] sediment metagenome; Lake sediment
403
327
-
Thr
GGT
[ENA]
¢þ
>WENV181361256
OFNM01000966
[OFNM] sediment metagenome; Lake sediment
404
491
+
Tyr
GTA
[ENA]
¢þ
>WENV181361241
OFNM01000622
[OFNM] sediment metagenome; Lake sediment
406
482
+
Asp
GTC
[ENA]
¢þ
>WENV181361291
OFNM01002670
[OFNM] sediment metagenome; Lake sediment
454
384
-
Gln
CTG
[ENA]
¢þ
>WENV181361290
OFNM01002659
[OFNM] sediment metagenome; Lake sediment
472
402
-
Gly
CCC
[ENA]
¢þ
>WENV181361287
OFNM01002341
[OFNM] sediment metagenome; Lake sediment
476
400
-
Gly
TCC
[ENA]
¢þ
>WENV181361283
OFNM01002254
[OFNM] sediment metagenome; Lake sediment
476
548
+
Trp
CCA
[ENA]
¢þ
>WENV181361263
OFNM01001361
[OFNM] sediment metagenome; Lake sediment
477
392
-
Tyr
GTA
[ENA]
¢þ
>WENV181361242
OFNM01000622
[OFNM] sediment metagenome; Lake sediment
499
573
+
Met
CAT
[ENA]
¢þ
>WENV181361249
OFNM01000855
[OFNM] sediment metagenome; Lake sediment
501
427
-
Gln
TTG
[ENA]
¢þ
>WENV181361293
OFNM01002695
[OFNM] sediment metagenome; Lake sediment
520
434
-
Ser
AGA
[ENA]
¢þ
>WENV181361285
OFNM01002264
[OFNM] sediment metagenome; Lake sediment
526
604
+
Ala
TGC
[ENA]
¢þ
>WENV181361260
OFNM01001353
[OFNM] sediment metagenome; Lake sediment
536
461
-
Ala
GGC
[ENA]
¢þ
>WENV181361275
OFNM01001846
[OFNM] sediment metagenome; Lake sediment
556
644
+
Ser
TGA
[ENA]
¢þ
>WENV181361269
OFNM01001628
[OFNM] sediment metagenome; Lake sediment
557
631
+
Asp
GTC
[ENA]
¢þ
>WENV181361288
OFNM01002362
[OFNM] sediment metagenome; Lake sediment
558
474
-
Leu
TAA
[ENA]
¢þ
>WENV181361273
OFNM01001821
[OFNM] sediment metagenome; Lake sediment
575
490
-
Ser
GCT
[ENA]
¢þ
>WENV181361252
OFNM01000959
[OFNM] sediment metagenome; Lake sediment
589
661
+
Asp
GTC
[ENA]
¢þ
>WENV181361266
OFNM01001397
[OFNM] sediment metagenome; Lake sediment
589
663
+
Glu
CTC
[ENA]
¢þ
>WENV181361240
OFNM01000373
[OFNM] sediment metagenome; Lake sediment
595
670
+
Gly
CCC
[ENA]
¢þ
>WENV181361265
OFNM01001378
[OFNM] sediment metagenome; Lake sediment
633
706
+
Gly
TCC
[ENA]
¢þ
>WENV181361262
OFNM01001361
[OFNM] sediment metagenome; Lake sediment
655
569
-
Met
CAT
[ENA]
¢þ
>WENV181361243
OFNM01000622
[OFNM] sediment metagenome; Lake sediment
664
740
+
Ile
GAT
[ENA]
¢þ
>WENV181361253
OFNM01000959
[OFNM] sediment metagenome; Lake sediment
671
744
+
Met
CAT
[ENA]
¢þ
>WENV181361211
OFNM01000065
[OFNM] sediment metagenome; Lake sediment
679
756
+
Pro
GGG
[ENA]
¢þ
>WENV181361268
OFNM01001430
[OFNM] sediment metagenome; Lake sediment
690
610
-
Leu
CAA
[ENA]
¢þ
>WENV181361238
OFNM01000250
[OFNM] sediment metagenome; Lake sediment
705
629
-
Val
GAC
[ENA]
¢þ
>WENV181361248
OFNM01000830
[OFNM] sediment metagenome; Lake sediment
737
661
-
Sup
CTA
[ENA]
¢þ
>WENV181361267
OFNM01001430
[OFNM] sediment metagenome; Lake sediment
772
702
-
Lys
CTT
[ENA]
¢þ
>WENV181361244
OFNM01000651
[OFNM] sediment metagenome; Lake sediment
783
858
+
Ala
CGC
[ENA]
¢þ
>WENV181361261
OFNM01001361
[OFNM] sediment metagenome; Lake sediment
834
760
-
His
GTG
[ENA]
¢þ
>WENV181361259
OFNM01001353
[OFNM] sediment metagenome; Lake sediment
844
771
-
Ala
CGC
[ENA]
¢þ
>WENV181361198
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
907
982
+
Gly
CCC
[ENA]
¢þ
>WENV181361257
OFNM01000966
[OFNM] sediment metagenome; Lake sediment
919
995
+
Ile
GAT
[ENA]
¢þ
>WENV181361215
OFNM01000067
[OFNM] sediment metagenome; Lake sediment
956
882
-
Gln
CTG
[ENA]
¢þ
>WENV181361225
OFNM01000120
[OFNM] sediment metagenome; Lake sediment
1016
1091
+
Trp
CCA
[ENA]
¢þ
>WENV181361214
OFNM01000067
[OFNM] sediment metagenome; Lake sediment
1040
967
-
Gln
TTG
[ENA]
¢þ
>WENV181361229
OFNM01000142
[OFNM] sediment metagenome; Lake sediment
1255
1327
+
Trp
CCA
[ENA]
¢þ
>WENV181361239
OFNM01000265
[OFNM] sediment metagenome; Lake sediment
1269
1194
-
Gln
CTG
[ENA]
¢þ
>WENV181361231
OFNM01000155
[OFNM] sediment metagenome; Lake sediment
1288
1363
+
Pro
TGG
[ENA]
¢þ
>WENV181361213
OFNM01000067
[OFNM] sediment metagenome; Lake sediment
1343
1257
-
Asn
GTT
[ENA]
¢þ
>WENV181361232
OFNM01000155
[OFNM] sediment metagenome; Lake sediment
1377
1452
+
Gln
CTG
[ENA]
¢þ
>WENV181361233
OFNM01000155
[OFNM] sediment metagenome; Lake sediment
1463
1541
+
Pro
GGG
[ENA]
¢þ
>WENV181361230
OFNM01000142
[OFNM] sediment metagenome; Lake sediment
1561
1634
+
Gln
CTG
[ENA]
¢þ
>WENV181361208
OFNM01000056
[OFNM] sediment metagenome; Lake sediment
1569
1644
+
Ile
GAT
[ENA]
¢þ
>WENV181361199
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
1646
1720
+
Gly
TCC
[ENA]
¢þ
>WENV181361209
OFNM01000056
[OFNM] sediment metagenome; Lake sediment
1661
1753
+
Ser
GCT
[ENA]
¢þ
>WENV181361226
OFNM01000120
[OFNM] sediment metagenome; Lake sediment
1688
1762
+
Ala
TGC
[ENA]
¢þ
>WENV181361212
OFNM01000065
[OFNM] sediment metagenome; Lake sediment
1731
1808
+
Pro
CGG
[ENA]
¢þ
>WENV181361235
OFNM01000218
[OFNM] sediment metagenome; Lake sediment
1795
1869
+
Trp
CCA
[ENA]
¢þ
>WENV181361236
OFNM01000218
[OFNM] sediment metagenome; Lake sediment
1883
1955
+
Thr
GGT
[ENA]
¢þ
>WENV181361237
OFNM01000218
[OFNM] sediment metagenome; Lake sediment
1963
2046
+
Ser
TGA
[ENA]
¢þ
>WENV181361234
OFNM01000198
[OFNM] sediment metagenome; Lake sediment
2066
2143
+
Gly
GCC
[ENA]
¢þ
>WENV181361218
OFNM01000069
[OFNM] sediment metagenome; Lake sediment
2084
2007
-
Ala
GGC
[ENA]
¢þ
>WENV181361217
OFNM01000069
[OFNM] sediment metagenome; Lake sediment
2193
2121
-
Ala
CGC
[ENA]
¢þ
>WENV181361227
OFNM01000120
[OFNM] sediment metagenome; Lake sediment
2675
2762
+
Leu
TAA
[ENA]
¢þ
>WENV181361224
OFNM01000113
[OFNM] sediment metagenome; Lake sediment
2801
2717
-
Leu
CAA
[ENA]
¢þ
>WENV181361223
OFNM01000113
[OFNM] sediment metagenome; Lake sediment
2939
2856
-
Leu
TAA
[ENA]
¢þ
>WENV181361222
OFNM01000113
[OFNM] sediment metagenome; Lake sediment
3050
2966
-
Tyr
GTA
[ENA]
¢þ
>WENV181361221
OFNM01000113
[OFNM] sediment metagenome; Lake sediment
3151
3062
-
Leu
CAG
[ENA]
¢þ
>WENV181361220
OFNM01000113
[OFNM] sediment metagenome; Lake sediment
3398
3312
-
Leu
GAG
[ENA]
¢þ
>WENV181361219
OFNM01000103
[OFNM] sediment metagenome; Lake sediment
3591
3518
-
Leu
CAA
[ENA]
¢þ
>WENV181361200
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
3921
3997
+
Arg
CCT
[ENA]
¢þ
>WENV181361216
OFNM01000069
[OFNM] sediment metagenome; Lake sediment
4513
4438
-
His
GTG
[ENA]
¢þ
>WENV181361201
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
4631
4702
+
Lys
CTT
[ENA]
¢þ
>WENV181361202
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
4861
4944
+
Ser
CGA
[ENA]
¢þ
>WENV181361210
OFNM01000056
[OFNM] sediment metagenome; Lake sediment
5214
5304
+
Tyr
GTA
[ENA]
¢þ
>WENV181361203
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
5859
5935
+
Val
CAC
[ENA]
¢þ
>WENV181361204
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
5944
6020
+
Val
GAC
[ENA]
¢þ
>WENV181361205
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
6379
6455
+
Thr
CGT
[ENA]
¢þ
>WENV181361206
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
6684
6759
+
Lys
TTT
[ENA]
¢þ
>WENV181361207
OFNM01000037
[OFNM] sediment metagenome; Lake sediment
7822
7897
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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