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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFNN] sediment metagenome; Lake sediment
HIT:
69 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361364
OFNN01001493
[OFNN] sediment metagenome; Lake sediment
19
92
+
Arg
TCT
[ENA]
¢þ
>WENV181361370
OFNN01001819
[OFNN] sediment metagenome; Lake sediment
29
107
+
Arg
TCG
[ENA]
¢þ
>WENV181361319
OFNN01000110
[OFNN] sediment metagenome; Lake sediment
35
110
+
Pro
CGG
[ENA]
¢þ
>WENV181361346
OFNN01000874
[OFNN] sediment metagenome; Lake sediment
46
120
+
Ala
TGC
[ENA]
¢þ
>WENV181361369
OFNN01001682
[OFNN] sediment metagenome; Lake sediment
100
177
+
Lys
CTT
[ENA]
¢þ
>WENV181361341
OFNN01000791
[OFNN] sediment metagenome; Lake sediment
103
175
+
Met
CAT
[ENA]
¢þ
>WENV181361372
OFNN01002403
[OFNN] sediment metagenome; Lake sediment
107
18
-
Asn
GTT
[ENA]
¢þ
>WENV181361373
OFNN01002864
[OFNN] sediment metagenome; Lake sediment
113
187
+
Cys
GCA
[ENA]
¢þ
>WENV181361339
OFNN01000728
[OFNN] sediment metagenome; Lake sediment
145
215
+
Gln
CTG
[ENA]
¢þ
>WENV181361355
OFNN01000918
[OFNN] sediment metagenome; Lake sediment
167
96
-
Asp
GTC
[ENA]
¢þ
>WENV181361368
OFNN01001670
[OFNN] sediment metagenome; Lake sediment
170
93
-
Asp
GTC
[ENA]
¢þ
>WENV181361376
OFNN01003821
[OFNN] sediment metagenome; Lake sediment
184
112
-
Cys
GCA
[ENA]
¢þ
>WENV181361338
OFNN01000648
[OFNN] sediment metagenome; Lake sediment
202
128
-
Phe
GAA
[ENA]
¢þ
>WENV181361345
OFNN01000799
[OFNN] sediment metagenome; Lake sediment
214
289
+
fMet
CAT
[ENA]
¢þ
>WENV181361371
OFNN01002204
[OFNN] sediment metagenome; Lake sediment
220
132
-
Ser
GCT
[ENA]
¢þ
>WENV181361328
OFNN01000252
[OFNN] sediment metagenome; Lake sediment
245
163
-
Leu
CAA
[ENA]
¢þ
>WENV181361363
OFNN01001380
[OFNN] sediment metagenome; Lake sediment
246
170
-
Ile
GAT
[ENA]
¢þ
>WENV181361374
OFNN01003409
[OFNN] sediment metagenome; Lake sediment
247
173
-
Pro
TGG
[ENA]
¢þ
>WENV181361313
OFNN01000097
[OFNN] sediment metagenome; Lake sediment
250
321
+
Glu
TTC
[ENA]
¢þ
>WENV181361367
OFNN01001562
[OFNN] sediment metagenome; Lake sediment
314
239
-
Thr
GGT
[ENA]
¢þ
>WENV181361347
OFNN01000874
[OFNN] sediment metagenome; Lake sediment
331
404
+
Glu
TTC
[ENA]
¢þ
>WENV181361344
OFNN01000798
[OFNN] sediment metagenome; Lake sediment
332
258
-
Glu
TTC
[ENA]
¢þ
>WENV181361325
OFNN01000230
[OFNN] sediment metagenome; Lake sediment
338
410
+
His
GTG
[ENA]
¢þ
>WENV181361375
OFNN01003513
[OFNN] sediment metagenome; Lake sediment
372
456
+
Leu
TAG
[ENA]
¢þ
>WENV181361326
OFNN01000231
[OFNN] sediment metagenome; Lake sediment
399
321
-
Arg
GCG
[ENA]
¢þ
>WENV181361362
OFNN01001380
[OFNN] sediment metagenome; Lake sediment
411
337
-
Met
CAT
[ENA]
¢þ
>WENV181361348
OFNN01000874
[OFNN] sediment metagenome; Lake sediment
414
488
+
Gly
GCC
[ENA]
¢þ
>WENV181361327
OFNN01000252
[OFNN] sediment metagenome; Lake sediment
419
336
-
Leu
TAG
[ENA]
¢þ
>WENV181361340
OFNN01000728
[OFNN] sediment metagenome; Lake sediment
433
514
+
Pro
TGG
[ENA]
¢þ
>WENV181361360
OFNN01001354
[OFNN] sediment metagenome; Lake sediment
444
519
+
Gln
CTG
[ENA]
¢þ
>WENV181361359
OFNN01001210
[OFNN] sediment metagenome; Lake sediment
446
517
+
Thr
CGT
[ENA]
¢þ
>WENV181361358
OFNN01001078
[OFNN] sediment metagenome; Lake sediment
482
555
+
Ala
CGC
[ENA]
¢þ
>WENV181361349
OFNN01000874
[OFNN] sediment metagenome; Lake sediment
494
568
+
Val
TAC
[ENA]
¢þ
>WENV181361361
OFNN01001380
[OFNN] sediment metagenome; Lake sediment
504
428
-
Asp
GTC
[ENA]
¢þ
>WENV181361365
OFNN01001519
[OFNN] sediment metagenome; Lake sediment
536
610
+
Asn
GTT
[ENA]
¢þ
>WENV181361315
OFNN01000103
[OFNN] sediment metagenome; Lake sediment
604
678
+
Lys
TTT
[ENA]
¢þ
>WENV181361366
OFNN01001519
[OFNN] sediment metagenome; Lake sediment
614
690
+
Ile2
CAT
[ENA]
¢þ
>WENV181361356
OFNN01001010
[OFNN] sediment metagenome; Lake sediment
642
571
-
Glu
CTC
[ENA]
¢þ
>WENV181361354
OFNN01000918
[OFNN] sediment metagenome; Lake sediment
657
571
-
Ser
AGA
[ENA]
¢þ
>WENV181361350
OFNN01000874
[OFNN] sediment metagenome; Lake sediment
669
752
+
Leu
TAG
[ENA]
¢þ
>WENV181361336
OFNN01000566
[OFNN] sediment metagenome; Lake sediment
685
760
+
Arg
ACG
[ENA]
¢þ
>WENV181361334
OFNN01000545
[OFNN] sediment metagenome; Lake sediment
687
758
+
Ser
TGA
[ENA]
¢þ
>WENV181361332
OFNN01000510
[OFNN] sediment metagenome; Lake sediment
687
772
+
Leu
CAG
[ENA]
¢þ
>WENV181361316
OFNN01000103
[OFNN] sediment metagenome; Lake sediment
693
763
+
Lys
CTT
[ENA]
¢þ
>WENV181361351
OFNN01000874
[OFNN] sediment metagenome; Lake sediment
763
834
+
Gly
CCC
[ENA]
¢þ
>WENV181361317
OFNN01000103
[OFNN] sediment metagenome; Lake sediment
775
855
+
Leu
CAA
[ENA]
¢þ
>WENV181361330
OFNN01000374
[OFNN] sediment metagenome; Lake sediment
785
698
-
Ser
TGA
[ENA]
¢þ
>WENV181361312
OFNN01000096
[OFNN] sediment metagenome; Lake sediment
788
860
+
Gly
GCC
[ENA]
¢þ
>WENV181361357
OFNN01001068
[OFNN] sediment metagenome; Lake sediment
809
886
+
Gly
GCC
[ENA]
¢þ
>WENV181361342
OFNN01000791
[OFNN] sediment metagenome; Lake sediment
906
977
+
Gln
CTG
[ENA]
¢þ
>WENV181361352
OFNN01000874
[OFNN] sediment metagenome; Lake sediment
931
1015
+
Leu
TAA
[ENA]
¢þ
>WENV181361353
OFNN01000915
[OFNN] sediment metagenome; Lake sediment
960
888
-
Ala
TGC
[ENA]
¢þ
>WENV181361337
OFNN01000568
[OFNN] sediment metagenome; Lake sediment
976
898
-
Ile
GAT
[ENA]
¢þ
>WENV181361343
OFNN01000791
[OFNN] sediment metagenome; Lake sediment
987
1061
+
Leu
TAG
[ENA]
¢þ
>WENV181361324
OFNN01000168
[OFNN] sediment metagenome; Lake sediment
988
1061
+
Pro
GGG
[ENA]
¢þ
>WENV181361331
OFNN01000389
[OFNN] sediment metagenome; Lake sediment
1014
940
-
Pro
CGG
[ENA]
¢þ
>WENV181361335
OFNN01000545
[OFNN] sediment metagenome; Lake sediment
1099
1172
+
Lys
CTT
[ENA]
¢þ
>WENV181361333
OFNN01000527
[OFNN] sediment metagenome; Lake sediment
1170
1246
+
Leu
AAG
[ENA]
¢þ
>WENV181361323
OFNN01000133
[OFNN] sediment metagenome; Lake sediment
1276
1203
-
Val
TAC
[ENA]
¢þ
>WENV181361320
OFNN01000110
[OFNN] sediment metagenome; Lake sediment
1293
1367
+
Phe
GAA
[ENA]
¢þ
>WENV181361329
OFNN01000275
[OFNN] sediment metagenome; Lake sediment
1499
1582
+
Leu
CAA
[ENA]
¢þ
>WENV181361321
OFNN01000110
[OFNN] sediment metagenome; Lake sediment
1707
1778
+
Gln
TTG
[ENA]
¢þ
>WENV181361322
OFNN01000110
[OFNN] sediment metagenome; Lake sediment
1983
2055
+
Ile
GAT
[ENA]
¢þ
>WENV181361318
OFNN01000103
[OFNN] sediment metagenome; Lake sediment
2099
2171
+
Arg
CCT
[ENA]
¢þ
>WENV181361314
OFNN01000097
[OFNN] sediment metagenome; Lake sediment
2136
2209
+
Leu
TAA
[ENA]
¢þ
>WENV181361311
OFNN01000027
[OFNN] sediment metagenome; Lake sediment
3154
3079
-
Thr
TGT
[ENA]
¢þ
>WENV181361310
OFNN01000017
[OFNN] sediment metagenome; Lake sediment
4941
4867
-
Gln
TTG
[ENA]
¢þ
>WENV181361308
OFNN01000011
[OFNN] sediment metagenome; Lake sediment
6357
6429
+
Trp
CCA
[ENA]
¢þ
>WENV181361309
OFNN01000011
[OFNN] sediment metagenome; Lake sediment
6663
6736
+
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK